si:dkey-156n14.3 (zxdc)


Basic Information

Item Value
gene id si:dkey-156n14.3
gene name zxdc
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 14022253 ~ 14030692 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918485.2
AAATTGCGTAGTGGCTCGGCGGGATCGCGTAGGGCGGGCCTACAGCGCGCCGCTGCTACAGGGATACCAAGATGGAAATCCAGGGGCTTTCTAATGCCCAAAACACTCACTACCAACATGGCGTCCCGCTTGAGACTGGTATGTCGTCGTCGGGAACGACAACGGGGACTGTTTCTAGACAAACTTCACACGAAAACGATAACAGCTTCGGATCGCACagcgacaacaacaacaacaggccCTCGTCTGCTCCGCTTCGACTGCTGGCACAAAATGGCAGCGGTGCTCGGCTCTCTGTACAGCACAAACGGAGCGAGAGCAGCAGCACGCTGTCAGAGGACGTTCAGGCGGCTCATATTGAGCTCTGTAACCTGAACGTGATGAAGGTGAAAGAGTACGCTGATTTAGATCTGCCGCCTGACTTCGTGAGGGCCGAGCTGAAGTACGGAGAGGAGGCTGAGCCTGAGACTGAGGACGGCGTGATGCAAATGGCGCTGCCGCTCTTCGACGGGGAGGAAGACGGATACACTGCGCAGTGTGAGCAGCACCGACAACAGCACCGAGAGCCAGTGATGAGAGACACATGTCCATCTGCAAGCGACGGCACGACCGGGTCTTCCGAAGCCAAAAACCCCAAGGAGTTTTACGTTGTTTTCAACAAAGTACAGGAAGTACTCGTGTGTGAAGAGGACGGAGAAAAGAGAGCAGATTGCTCCAAACCGACTTACGGCCCATCAGAGGTCCAACACACCCCGGATTTCTCAGAATCACAAGACCGCAGTTTGACAATCAAAGCCAAATCTTGTGCCACATGCAGTGTTGACAGTTTGACAACCAGTTGTAAGCTAGTAAATGAAGCTGGTCCTGCCACAGGCGGGAAGCAGGAGGCTGAGAAGCGCTGCATGGCGCTGCGAGAGGACGGCGTTAAGAGAGCGGATGAGAAGCTGTCTGCTGTGATGACCTGTAGTGATTTAGTGTCAGTGGAGCAGGCATCAAGTCAGCTAACGGAGTGTGAAAGTAAAAGCGATGCCACTGAAATGCCGGCGGACTACGTGAATCTGGCAGGCAGCAGTAACGGAGACGCCGCCAGCGACGGGCCGCCCGAGACTTTCTCCGGCACCATCATGATCAACAACCAGAGCATCATCGTGACTATCGAGAACGGGGTTTTAACTCTGGCGGCCCCGCCGGAGGGCTACACGTACAAGGAGGACGCAGTGGTGAGTCTAAAAGAGCATTTGGGCGTGAAGGAGCACGAAGACATCGTCCTCCTGAACTACGAGGGCGGCACGAAATCTCTGGGGAAGATGGCCGAGGACGAGGGCGGCGCCGTGAGCGACTCGGAGGAGCTGACGCTGACCGATGACTGCTCCCTGTCAGAGCTAGGCCCTCTGGACAACTGTCCGTCCGTTAAACGGGAAGAAGGAACTCTGTGCGACTCTGATTCCACAGCTCAGACCCCAAGAGGTCCGACTGAAGATGATCTGCAACCCGCAAGCCTCGTCTCTCCAACCGGCTTAGTTAAGAAAGGTGTCGCGGTGTCGTACCGCTGCCCTCAGCCTGGCTGCGCATGCGCGTTCGACAGCCGCCAGAAGCTCAAGATGCACTTGGTGTTTCACGCTGAAGACCAGCGGCCCTTCAAGTGCACAGTGGAGGGCTGTGGCTGGTCCTTCACCACCTCTTACAAGCTGAAGCGGCACCTGCAATCGCATGACAAGGTGCGACCCTACGAGTGCGAGTATGAAAACTGCGGCCGCCGCTTCACCACCATCTATAACCTGAAGGCGCATGCGCGAGCGCACGAGCAGGAGGACGCGTTTGCGTGCGAACTGTGCGGAGAAAGGTTCCGCAGCGCCACGCGCCTCGCCAACCATCAGAGGACGCACTTCGAGCCCGAACGGCCACACAAGTGCGAGTTCCCAGGATGTGAGAAGGCCTTCATCACCTTCAGTGCCCTGTTCTCACACAACAGGACCCACTTCAGAGAGACAAGCCAGTTCACCTGTACATACCCAGGCTGTGACAAGCGCTATGACAAGGCCTGTCGCCTTAAAATCCATCTTCGTAgtcacacagGTGAAAGGCCATTTGTCTGTGACTCAGAATCTTGTGGCTGGACTTTCACTAGCATGTCAAAGCTGCTGCGCCACAAAAGGAAGCATGATGATGATCGGCGGTTCACCTGTCCAGAAGAAGGGTGTGGGAAGTCCTTTACCCGCGCAGAGCACCTGAAAGGCCACAGTATCACCCACCTGGGCACTAAGCCCTTTGAGTGCCCAGTAGAAGGATGTAATGCTAAGTTCTCAGCACGGAGTAGCCTATACATCCACTCTAAGAAACACCGTCAGGATGGGGTGTCTCTGAGGAGCAGGTGCCCTGTGGCAGGATGCACCAAGCACTCATCCCGCAGTAGCCTCAAGAGTCATATGCTTAAACACCACAACCTCAGCCCAGATGTGTTGAGTCAATTGGAAAACACGGTCACTCTGACGCCTAGCTGCGAGCTCACCAGTGCTGCTCAGAGCGCCACCACTCCTGGCTCTGTGGGAACGGAGCTCAGCAGCCTGGATCTCTCCTCCCTTTTTTCCAACGTTCCCTCAGGAGCATCCACTGTACCTGCAGGTCCTACCCCTCAGTCAGGCCCTGCTCCCTTCACCATGGACATGGCTCTAGCGAGCAGTGGGATTCTTACCATAGATCCAGCCTCAGTGGGCTCAGCTTTGGGAGGAGCCAAACCTGTGGACCCTCTGATTTTGACTGCAGGTGGGGATATGGGGGTACATGTCCTGGATGCAGGGGGAGGGGGTGGGGTCTTACAGCAAGCAGCACTGCAGCTGGACGATGTACAGACGGTAAATCCTGAGGCACTTGGAGCGTTAACGGCCTTGGCAATACAGAGCACCTCAGCCGCAGAGCAGCTCCAAGCCCTGAGCTCCTCCAGTGCTTTAACAGCAGAGTCACCTTCTTCCTCTCTGACCCCATCCCTtactccctccctctcctctaCTCTCTCGTCACCGCTGTCATCTCTTGCTCCATCTCTCACGTCCTCTCTTGTTCCGTCTCTGGCGTCTTCCGCAGTACCAGAGCTGCTGTCTTCCCAGGTAAAGGCTGATATGGGGGGCAGTGAAGCAGCTGTGGGGACATTACTAAGTGGAGTGGAGGGCCTGAGCCAGCCGGAGAACAGCAAGGCTCTGAGTCAGTTTGTTTTCCCTAGCCACAGCTCTTCCTACAGCGGGCAGAAAGAGACGGAGCTGCCCTCAGTTGCTTCTTGTGCTTTTATTGAGAGCAGTGGTTCCGCCCGTACAGACTACAGGGCCATCCAACTGGCAAAGCGGAAGAAGCAGAAAGGCCCTGCTGCAAGTCCATCTACTGCAGGGGCAACTCAGCGGAAGACTAAAGGGGTGAAGAGTTCCAGTGCTGCAGGGACATTGGCTTCAGGCAGTGCTCGGTTTGGAGAAGGGACTGCTTCCACCACCACAGCTGGTCTCACTATCCGAGACCCAGTCACTGGAGTACAGTATGTACAGATTCAGCTGCTGCAGGATGACCCGGCCACAGATGGAGATTTGGCTTTCCAGCTCAGTTCGCAGACCTCCAGTTCTCATTCCCAGCTAACAGTCGACTTGCCTGTCAACATCTTGCAGGAGCCTTCTGCCATGGCTGAGGATGATAATGGATCTGATAACTCTCAGTTCACTGGCAGTACCATTAACCTACAGGAcctggaataaaacactcaccTGAGAGTCAACAAGAGCGCCTAGTAGACCTACTGACagttccttttctctttcttaccTTCACAGAAGGCATCTGTTTTCAATATGTCTGCTGTCAGGGTATTTGTGTATGTCTAATAGGTGTTTTCTATGAGACGTTTCTGAACTTAGTAGTGCAGCAATTTGAATTTAAAAGCATATTTAAACAGCCTAATTCCATACTTCCAGGATAAAATGTATTTGACCAGAAGTAAAGTTATTTCATGTGCTTCATGTATTAGCTAATTTTCCTTTGTAGTGAACATGAGCTGTTATTGCTAACAGAGTACTTATGAGCCAACTCTGTGTAGTCATTAAAGTGTCAATGAACAGCAATGAGTTGTCACAtagattttaatatatattatttctttttctggaAGGCATACACTTTGACCTAGGGAACATCAGCTAATGTGACAGCTGCTTGATAAATCTGGTATATTGTCTGGTGTAAGTCTATGTTAAAGCAGCTTTATGTACTTGGATTGTGAAACAGCACAATAGGGTATAATAGATgtaagatttattattatttatgcagAAACATACCCATCAAAATAACTGTTTGTCATGAACATTGTCTTGAGTTTGTCTTCAAGTCCTGATGAGAACAGCTTTTACAATCATGAAAGGTTTTTTCCCctactgtttttgtttgcttatttttgtATGGTTTTGTATAAAACATGACGATGTACTTCTTTGTTTTGTGTATGAGAGTATGACATACAAGATTAAAAGTTGCTctacttttaataaaaactggCCATATGTAA

Function

symbol description
zxdc Enables C2H2 zinc finger domain binding activity; LRR domain binding activity; and transcription coactivator activity. Involved in positive regulation of transcription, DNA-templated. Predicted to be active in nucleus.

NR:

description
zinc finger protein ZXDC-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918485.2 True 4540 mRNA 0.52 10 14022253 14030692

Neighbor

gene id symbol gene type direction distance location
LOC113533199 cpne9,LOC106583634,LOC106565248,LOC102776939,LOC106947665,LOC100694516,LOC103466873,LOC106915448 coding upstream 3521 13931140 ~ 14018732 (+)
mtmr14 mtmr14,LOC106583633 coding upstream 91462 13912064 ~ 13930791 (+)
setd5 setd5 coding upstream 157584 13836547 ~ 13864669 (+)
si:dkey-19e4.5 LOC108272187,LOC103025619,LOC108427613,LOC104930301,LOC103373509 coding upstream 188227 13827423 ~ 13834026 (+)
plxnb1b plxnb1,LOC108271959 coding upstream 200770 13746014 ~ 13821483 (+)
LOC113533298 LOC108272123 coding downstream 18043 14048735 ~ 14058514 (+)
aldh1l1 LOC108272091,LOC103022276,LOC108427619,LOC105901876,LOC101480024,LOC100704523,LOC102210696,LOC103359410,LOC102300968 coding downstream 69515 14100207 ~ 14113930 (+)
LOC113531458 LOC108271995 coding downstream 87291 14117983 ~ 14129183 (+)
myl9b myl9,LOC103045271,LOC103386121,LOC106565219,LOC100697131 coding downstream 552635 14583327 ~ 14588319 (+)
quo LOC108271936,LOC107582340,LOC107690824 coding downstream 696465 14727157 ~ 14761927 (+)
G26884 NA non-coding upstream 148730 13873315 ~ 13873523 (+)
G26875 NA non-coding upstream 185906 13834239 ~ 13836347 (+)
G26873 NA non-coding upstream 197027 13822384 ~ 13825226 (+)
G26848 NA non-coding upstream 392787 13626481 ~ 13629466 (+)
G26749 NA non-coding upstream 504850 13434904 ~ 13517403 (+)
G27164 NA non-coding downstream 139088 14169780 ~ 14172077 (+)
G27262 NA non-coding downstream 439398 14470090 ~ 14470420 (+)
G27269 NA non-coding downstream 460088 14490780 ~ 14491136 (+)
G27275 NA non-coding downstream 465520 14496212 ~ 14496858 (+)
G27309 NA non-coding downstream 524559 14555251 ~ 14555465 (+)
tshba tshb,LOC108271948 other upstream 516249 13490161 ~ 13506004 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other upstream 690076 13265788 ~ 13332177 (+)
si:ch211-286o17.1 NA other upstream 1270976 12728993 ~ 12751277 (+)
G25908 LOC108272198 other upstream 1494762 12526170 ~ 12527491 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other upstream 1808596 12204441 ~ 12213657 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other downstream 1248130 15278822 ~ 15304494 (+)
LOC113534559 LOC108272085 other downstream 1757934 15788626 ~ 15790444 (+)
slc2a11a LOC108271728,LOC108440316 other downstream 2052597 16083289 ~ 16103248 (+)
mustn1a LOC108272082,LOC108439813 other downstream 2150479 16181171 ~ 16182309 (+)
tomm6 tomm6 other downstream 2367553 16398245 ~ 16401111 (+)

Expression


Co-expression Network