tbc1d23 (tbc1d23,LOC107574489)


Basic Information

Item Value
gene id tbc1d23
gene name tbc1d23,LOC107574489
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 19956717 ~ 19983297 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918854.2
gcatggttCCCCGCGATGGACGGACTAACATCTAGCATAAGACAAGccacaagtgtgaaaacactccAGTGCACGGCTGTGGTCGTTACGACACCGCTGTGCTACTTTACGGCTCGGTGTGACGTGGACGTCACCACAGCAATGGCGGACGCTGTAGAGGAAGTACTTCAAAGCAGCTGggACGAGGACCTAGCCGAGGCTCTGGACTCTGTAGGTGGGGATCAGGATGCTGAGAAAGATGGCATCATTCAGGTCCAAAACCTGCTGCCTCCTCAAAGAGCCAAGCTTTGGAtgATTGCTCTAAATGTAGCAGGTAAAGGAGACAGTTTGTCCTCATGGGACGGGGCTTTGGATTTACCAGAGCAGACGCTCATACACAACCGAAGCCAGCAGCTCATTGatcaGCTGGGCCTTCCTGCAGAGGAGGGGCGGGACCTAGTGGGAGATGTGGAGGCAGTGATCACTTTCTATTGTAAGTCAAGAAATGTGACGTTCACAGCTGAACTCTGCTGGCCCAACCTGCTCAAACCTCTTCTGGGCCTCCAGTTAGCCCGCAGCGACCTCTACAACTGCTTCTACGCCATCATGAATAAGTACATTCCCAGGGACTGTGTGGCAAAGGGGCGCCCGTTCCACCTGTACAGACTGCTGCTGCAGTACCACGAGCCTGAACTCTGCTCATTCCTCGACACCAAAAAGATCACACCAGACTCCTATGCCATGAACTGGTTGGGCAGTTTGTTCTCTAGCCACTGTCTTCCTGAGGTCACTCAGGCCTTGTGGCACATCTACTTCCAGCAGGCCGACCCCTTCCTCATTTTCTTCCTTATGCTCATCATTCTTGTCAATGCCAAAGACATGATTCTTTCCCAAGAAGGAGACAGTAAAGAGGAGCTCATAAAAATGCTGGAACAGTCACCTACCTTGTTGGAGGCTGAGGACATTGAAGATCTGTTTTCACTGGCACAGTATTACCAAAGCAAGACGCCCCTCTCTCTCCGAAAGgaGAACCAGAACCTGTTTGGCAGCAGTCTGGTGGCTCTGAAGGAGGAGGACATGGACCTGAGTCAGGCTCTatgtctccctgtctctgtaCCTGAGATCCTGCAGGCCAATCAGCTCCAGTCTGAGGGAGTGCGCTTCTTTGTAGTGGACTGTCGACCAGCAGAGCAGTACAACGCTGGCCACTTGTCCACCGCCTTTCACCTGGACTCTGATCTGATGTTGCACAATCCGTCCGAGTTTGCTCTGTCTGTGAAGTCTCTGCTGGAGACACAAAAGCAGTCTCTGGAGTCGGGCTCAGTGGCCAGCGGTGAACATCTGTGCTTCATGGGCAGTGGGCGTGAGGAAGAAGACATGTACATGAACATGGTTCTCGCTCACTTTCTGCAGAAAAACAAGGAGTATGTCAGCATCGCTAAAGGTGGATTTATGGcactGCAGCAGCACCTGGCAGACATTAACGTAGAAGGGCCAGACAATGTGTATGTCCATTGGATAGTCAGCACTTCAGGATCCCACAGCAGCCTCAGCTCAGCAGACGGGGAGCTGAATATCACAGGGGATGGCAAAGGCGTCAAATCCCTTGTCAACAAAATGACCTTTGCCCTTAAATCCAAGTCAGTTAatgtgaaagagaaagtgatCAGCTTTATTGAAAACACCTCAGCTCCAGTGGACAGACTATCTTTCACTCTTCCCTGGCCAGAGAAGGGGATACCTGATCGGCATGTGAGCAGCAGTGACAGAGTGGGTAAACCCTATAGGGGCGTGAAGCCTGTCTTCAGCATCGGCGATGAGGAGGAATACGACACGGATGAGATTGACAGCTCTTCAATATCAGATGATGACCGCAAAGAGATAGTGAACATACAGACATGGATTAACAAACCAGATGTGAAGCACCACTTCCCGTGTAATGAGGTGAAAGAGACTGGACACATGTTCCCCAGCCACCTGCTAATCACAGCGACACACATGTACTGTCTGAGGGAGATCGCCTCACGGAAAGGATTTGCCTACATCCAGTCCAGACAGGCGTTAAGCTCTGTGGTGAAGATCACCTCGAAAAAGAAACATCCCGAGCTAATCACTTTCAAGTTTGGCAACAACAACTCTGCTGGAGTGGAAATTATGGCTGTAGAACGGTATTTGATCCCTAATGCTGGTGATGCCACTAAAGCCATCAAGCAGCAGATCATGAAGGTTCTGGATGCTCTGGAGAGCTCATAGAGTCGCTGTTGCTCTGAGGCTGCACTCCGGCTGTATGCAGTGAGACTGCCATGACTAACACAAGTCAGCACAACTGTGTAGAGGCAtagtctttctttcctttcatcccatttctctctctctctctctctctctctctctctctctgtgtgaacGGTTTCCTGGGACAGTACTGACATTCAGTGTTGCTGATCACATCCATGGGAGACACTCAAGATTTCAACAGAAGCCGTCATTCTGTTTAGCCTTTGGCATTTTCTTCTTGTCCCTGTCAAGAAAATCTACCCCTTTAGGTGTAAGGTTGGACTTGTCGCCTCAGTCTGGATGTCTGTCAAGCCTTAATCCTGTCGCTAATCCACTGTTTTTTATGCGAGGGACTCAAAGGCAGAGCCTGCGGTGAGATAAAGGACTCAAGCCTTGAAATGCTCAGTGTTTCATTCATCTTGTTTAATTTATGGATATTCTCATCATTCAGTCGTTCATTTAATCACTGCAGTACACTTTTGATGAGTTCTGTGCATATTTATCCGAGCAGTATTTATGCCTGCAAGTTAAGACCGCTGAATCGATGCCGTATTTATATTTGAAACTGTTGTGGAACGTAGTGGAGCACAAAAGTGATGCACAGGTGATGTTTGTCACCATGCAACATCTAACACATGCACTCTTCAGTCGTTCCCACGTATGTCACTTAAATAACTGATCTCGTAAATATAATTAACTCAGAAATGAGTCATTCCTCATGGTCTATGCTTGCAGCCTTAAAGCAGATGTGAAAGTTAAGAGAAGCAGTCTGTGGGTgagtaatatttgtatatactgtaaaactGTACCTAATGGTAGGCTCTggaaaaatttatttatgaacagACACTGAGAACGCTGACGCCACTAATAAGAGCAGCCTCACTGAGGATCATGttttgtaattataatatttgaCATTAAAGTCATGGTTTGATGTGACCAGgatgataataaaaacaaatgatacaGCAGGCCACTGTGACCCTTTATCATAACTCCTAATCAGCGTTTTGAGTGTAAACACATGGTTCTGTTTATGAACTGACTCATAGACAGAACCATGTTCTGTGACTCATAGGACAGGTGAAGAAAGAATCGACAGGTGAAGAGAGTTCACATCGCTGGTAAATTCATTAACCATTTGCTTTACAAACAAATCTCAGCTTTTCAGCTTGTATACATTTTCTGTTGAAACAACATTATTGTTCTttgtaaaattttttgttttaataaatttataagtaGCCTACAAA
>XM_026918863.2
gcatggttCCCCGCGATGGACGGACTAACATCTAGCATAAGACAAGccacaagtgtgaaaacactccAGTGCACGGCTGTGGTCGTTACGACACCGCTGTGCTACTTTACGGCTCGGTGTGACGTGGACGTCACCACAGCAATGGCGGACGCTGTAGAGGAAGTACTTCAAAGCAGCTGggACGAGGACCTAGCCGAGGCTCTGGACTCTGTAGGTGGGGATCAGGATGCTGAGAAAGATGGCATCATTCAGGTCCAAAACCTGCTGCCTCCTCAAAGAGCCAAGCTTTGGAtgATTGCTCTAAATGTAGCAGGTAAAGGAGACAGTTTGTCCTCATGGGACGGGGCTTTGGATTTACCAGAGCAGACGCTCATACACAACCGAAGCCAGCAGCTCATTGatcaGCTGGGCCTTCCTGCAGAGGAGGGGCGGGACCTAGTGGGAGATGTGGAGGCAGTGATCACTTTCTATTGTAAGTCAAGAAATGTGACGTTCACAGCTGAACTCTGCTGGCCCAACCTGCTCAAACCTCTTCTGGGCCTCCAGTTAGCCCGCAGCGACCTCTACAACTGCTTCTACGCCATCATGAATAAGTACATTCCCAGGGACTGTGTGGCAAAGGGGCGCCCGTTCCACCTGTACAGACTGCTGCTGCAGTACCACGAGCCTGAACTCTGCTCATTCCTCGACACCAAAAAGATCACACCAGACTCCTATGCCATGAACTGGTTGGGCAGTTTGTTCTCTAGCCACTGTCTTCCTGAGGTCACTCAGGCCTTGTGGCACATCTACTTCCAGCAGGCCGACCCCTTCCTCATTTTCTTCCTTATGCTCATCATTCTTGTCAATGCCAAAGACATGATTCTTTCCCAAGAAGGAGACAGTAAAGAGGAGCTCATAAAAATGCTGGAACAGTCACCTACCTTGTTGGAGGCTGAGGACATTGAAGATCTGTTTTCACTGGCACAGTATTACCAAAGCAAGACGCCCCTCTCTCTCCGAAAGgaGAACCAGAACCTGTTTGGCAGCAGTCTGGTGGCTCTGAAGGAGGAGGACATGGACCTGAGTCAGGCTCTatgtctccctgtctctgtaCCTGAGATCCTGCAGGCCAATCAGCTCCAGTCTGAGGGAGTGCGCTTCTTTGTAGTGGACTGTCGACCAGCAGAGCAGTACAACGCTGGCCACTTGTCCACCGCCTTTCACCTGGACTCTGATCTGATGTTGCACAATCCGTCCGAGTTTGCTCTGTCTGTGAAGTCTCTGCTGGAGACACAAAAGCAGTCTCTGGAGTCGGGCTCAGTGGCCAGCGGTGAACATCTGTGCTTCATGGGCAGTGGGCGTGAGGAAGAAGACATGTACATGAACATGGTTCTCGCTCACTTTCTGCAGAAAAACAAGGAGTATGTCAGCATCGCTAAAGGTGGATTTATGGcactGCAGCAGCACCTGGCAGACATTAACGTAGAAGGGCCAGACAATGTGTATGTCCATTGGATAGTCAGCACTTCAGGATCCCACAGCAGCCTCAGCTCAGCAGACGGGGAGCTGAATATCACAGGGGATGGCAAAGGCGTCAAATCCCTTGTCAACAAAATGACCTTTGCCCTTAAATCCAAGTCAGTTAatgtgaaagagaaagtgatCAGCTTTATTGAAAACACCTCAGCTCCAGTGGACAGGCATGTGAGCAGCAGTGACAGAGTGGGTAAACCCTATAGGGGCGTGAAGCCTGTCTTCAGCATCGGCGATGAGGAGGAATACGACACGGATGAGATTGACAGCTCTTCAATATCAGATGATGACCGCAAAGAGATAGTGAACATACAGACATGGATTAACAAACCAGATGTGAAGCACCACTTCCCGTGTAATGAGGTGAAAGAGACTGGACACATGTTCCCCAGCCACCTGCTAATCACAGCGACACACATGTACTGTCTGAGGGAGATCGCCTCACGGAAAGGATTTGCCTACATCCAGTCCAGACAGGCGTTAAGCTCTGTGGTGAAGATCACCTCGAAAAAGAAACATCCCGAGCTAATCACTTTCAAGTTTGGCAACAACAACTCTGCTGGAGTGGAAATTATGGCTGTAGAACGGTATTTGATCCCTAATGCTGGTGATGCCACTAAAGCCATCAAGCAGCAGATCATGAAGGTTCTGGATGCTCTGGAGAGCTCATAGAGTCGCTGTTGCTCTGAGGCTGCACTCCGGCTGTATGCAGTGAGACTGCCATGACTAACACAAGTCAGCACAACTGTGTAGAGGCAtagtctttctttcctttcatcccatttctctctctctctctctctctctctctctctctctgtgtgaacGGTTTCCTGGGACAGTACTGACATTCAGTGTTGCTGATCACATCCATGGGAGACACTCAAGATTTCAACAGAAGCCGTCATTCTGTTTAGCCTTTGGCATTTTCTTCTTGTCCCTGTCAAGAAAATCTACCCCTTTAGGTGTAAGGTTGGACTTGTCGCCTCAGTCTGGATGTCTGTCAAGCCTTAATCCTGTCGCTAATCCACTGTTTTTTATGCGAGGGACTCAAAGGCAGAGCCTGCGGTGAGATAAAGGACTCAAGCCTTGAAATGCTCAGTGTTTCATTCATCTTGTTTAATTTATGGATATTCTCATCATTCAGTCGTTCATTTAATCACTGCAGTACACTTTTGATGAGTTCTGTGCATATTTATCCGAGCAGTATTTATGCCTGCAAGTTAAGACCGCTGAATCGATGCCGTATTTATATTTGAAACTGTTGTGGAACGTAGTGGAGCACAAAAGTGATGCACAGGTGATGTTTGTCACCATGCAACATCTAACACATGCACTCTTCAGTCGTTCCCACGTATGTCACTTAAATAACTGATCTCGTAAATATAATTAACTCAGAAATGAGTCATTCCTCATGGTCTATGCTTGCAGCCTTAAAGCAGATGTGAAAGTTAAGAGAAGCAGTCTGTGGGTgagtaatatttgtatatactgtaaaactGTACCTAATGGTAGGCTCTggaaaaatttatttatgaacagACACTGAGAACGCTGACGCCACTAATAAGAGCAGCCTCACTGAGGATCATGttttgtaattataatatttgaCATTAAAGTCATGGTTTGATGTGACCAGgatgataataaaaacaaatgatacaGCAGGCCACTGTGACCCTTTATCATAACTCCTAATCAGCGTTTTGAGTGTAAACACATGGTTCTGTTTATGAACTGACTCATAGACAGAACCATGTTCTGTGACTCATAGGACAGGTGAAGAAAGAATCGACAGGTGAAGAGAGTTCACATCGCTGGTAAATTCATTAACCATTTGCTTTACAAACAAATCTCAGCTTTTCAGCTTGTATACATTTTCTGTTGAAACAACATTATTGTTCTttgtaaaattttttgttttaataaatttataagtaGCCTACAAA

Function

symbol description
tbc1d23 Involved in embryonic brain development. Acts upstream of or within brain development. Predicted to be located in cytoplasmic vesicle. Predicted to be active in trans-Golgi network. Is expressed in head. Used to study pontocerebellar hypoplasia. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia. Orthologous to human TBC1D23 (TBC1 domain family member 23).

NR:

description
PREDICTED: TBC1 domain family member 23 isoform X2

GO:      GO:0005097,GO:0032313

KEGG:

id description
K22555 TBC1D23; TBC1 domain family member 23

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918854.2 True 3512 mRNA 0.47 20 19956717 19983297
XM_026918863.2 False 3467 mRNA 0.47 19 19956717 19983297

Neighbor

gene id symbol gene type direction distance location
bcl6aa bcl6 coding downstream 404024 19544152 ~ 19552693 (-)
trnap-ugg_1 NA coding downstream 576205 19380441 ~ 19380512 (-)
im:7152348 NA coding downstream 580553 19372430 ~ 19376164 (-)
zgc:103559 LOC108272278,LOC108427664,LOC107696750,LOC107752646,LOC107552265,LOC105898261,LOC107733245 coding downstream 979780 18970308 ~ 18976937 (-)
agxta agxt,agxta,LOC108427662,LOC107552266,LOC107696749 coding downstream 987266 18964291 ~ 18969451 (-)
tomm70a tomm70 coding upstream 2727 19986024 ~ 19999160 (-)
gfi1ab LOC108271917 coding upstream 42557 20025854 ~ 20032781 (-)
evi5b evi5,LOC108427692 coding upstream 55653 20038950 ~ 20101198 (-)
dipk1ab fam69a,LOC108272054,LOC108427695,LOC103026455,LOC107590645,LOC107659006,LOC107566484 coding upstream 129648 20112945 ~ 20142257 (-)
zbtb11 zbtb11,LOC106576566 coding upstream 163088 20146385 ~ 20156159 (-)
G30255 NA non-coding downstream 32738 19923763 ~ 19923979 (-)
G30246 NA non-coding downstream 42766 19913653 ~ 19913951 (-)
G30236 NA non-coding downstream 69979 19885468 ~ 19886738 (-)
G30088 NA non-coding downstream 343115 19599498 ~ 19613602 (-)
G30085 NA non-coding downstream 372712 19583663 ~ 19584005 (-)
G30270 NA non-coding upstream 1378 19984675 ~ 19985919 (-)
G30320 NA non-coding upstream 120955 20104252 ~ 20112518 (-)
LOC117599142 NA non-coding upstream 213923 20197220 ~ 20199516 (-)
G30412 NA non-coding upstream 216236 20199533 ~ 20207732 (-)
G30421 NA non-coding upstream 263308 20246605 ~ 20246871 (-)
trnap-ugg NA other downstream 1139519 18817127 ~ 18817198 (-)
LOC113537624 NA other downstream 1139905 18794025 ~ 18816812 (-)
trnag-ucc NA other downstream 1140387 18816259 ~ 18816330 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other downstream 1761089 18148228 ~ 18195628 (-)
G29279 NA other downstream 1883808 18070987 ~ 18072909 (-)
glmnb LOC108272089 other upstream 20062 20003359 ~ 20014094 (-)
pex5la pex5l,pex5la,LOC107709207 other upstream 376425 20359722 ~ 20429325 (-)
lepr lepr other upstream 1298067 21281364 ~ 21317823 (-)
raver2 raver2 other upstream 1466249 21449546 ~ 21531428 (-)
ccdc17 ccdc17 other upstream 2589135 22572432 ~ 22581943 (-)

Expression


Co-expression Network