myl9b (myl9,LOC103045271,LOC103386121,LOC106565219,LOC100697131)


Basic Information

Item Value
gene id myl9b
gene name myl9,LOC103045271,LOC103386121,LOC106565219,LOC100697131
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 14583327 ~ 14588319 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919278.2
AGGGGTGTATTACTAAGCTGATGCTTTAAACAAACTTTTGTACAGAGTAACTGCCTCTATCCCTCTGTCCCACAGACAAAGCTTAGTCGGCCGTTCACTTCATCACCTAAAGCCAAGGTTCAGTCAGCCACCATCATGTCCAGCAAACGAGCCAAGGGGAAGTCCACAAAGAAGAGGCCACAGAGGGCCACGTCTAATGTGTTTGCTATGTTCGACCAGTCCCAGATCCAGGAGTTCAAGGAGGCCTTCAATATGATTGACCAGAACAGGGACGGATTCATTGACAAGGAGGATCTACATGACATGTTAGCCTCCTTGGGTAAGAACCCATCTGATGACTATCTGGAGGGCATGATGAGCGAAGCTCCGGGTCCCATCAACTTCACCATGTTCCTCACCATGTTTGGAGAGCGTCTGAATGGAACAGACCCTGAGGATGTGATCAGGAATGCCTTTGCCTGCTTTGATGAGGAGGGATCCGGTGTGATTCACGAAGATCACCTAAGAGAGCTGTTGACCACTATGGGGGATCGCTTCACTGATGAGGAAGTGGACGAGCTATTCCGAGAGGCTCCCATTGACAAGAAAGGCAACTTCAACTATGCCGAATTCACTCGCATCCTCAAACACGGGGCTAAGGACAAGGATGACATGTAAAGCCTTAGAGACTCTTAACTTGGCAGCAGAGTGCATTTTACTTACAAAAATAATGTGTCCATAAAGGgagaacaaaagacaaacaaatgaCACATTACTGTAAAGTAAAAAGCACATAAAACACAACTGTATTACAGTATAaccacacaaaaatacaaaaatgagtCCTTCTTATTATAGGCTACTTGCACTTGTGTAGATTAAATTGTGATGACTGTATacctcgttttttttttttcctcttcatatGCCCATGTGCCTTAAAGAATTATATAGTGCACGGAACTGtgtccttgtttttttctgcagacGTTCAATAGGTTCAGTTGGTTACTGTGAAGTTCAGCTAATATGAAGTCGTAACATAAAAGTAAACATCTCAGCAAAAAGACTGTTACATGTAACGTTGTGTGATAATTCAGAGGGAAACCACTGTAACATGGTCAGATTAAACTGATAGAAACACTGGC
>XM_026919289.2
ATGCTTTAAACAAACTTTTGTACAGAGTAACTGCCTCTATCCCTCTGTCCCACAGACAAAGCTTAGTCGGCCGTTCACTTCATCACCTAAAGCCAAGctttacctcatcCCCAGGTTCAGTCAGCCACCATCATGTCCAGCAAACGAGCCAAGGGGAAGTCCACAAAGAAGAGGCCACAGAGGGCCACGTCTAATGTGTTTGCTATGTTCGACCAGTCCCAGATCCAGGAGTTCAAGGAGGCCTTCAATATGATTGACCAGAACAGGGACGGATTCATTGACAAGGAGGATCTACATGACATGTTAGCCTCCTTGGGTAAGAACCCATCTGATGACTATCTGGAGGGCATGATGAGCGAAGCTCCGGGTCCCATCAACTTCACCATGTTCCTCACCATGTTTGGAGAGCGTCTGAATGGAACAGACCCTGAGGATGTGATCAGGAATGCCTTTGCCTGCTTTGATGAGGAGGGATCCGGTGTGATTCACGAAGATCACCTAAGAGAGCTGTTGACCACTATGGGGGATCGCTTCACTGATGAGGAAGTGGACGAGCTATTCCGAGAGGCTCCCATTGACAAGAAAGGCAACTTCAACTATGCCGAATTCACTCGCATCCTCAAACACGGGGCTAAGGACAAGGATGACATGTAAAGCCTTAGAGACTCTTAACTTGGCAGCAGAGTGCATTTTACTTACAAAAATAATGTGTCCATAAAGGgagaacaaaagacaaacaaatgaCACATTACTGTAAAGTAAAAAGCACATAAAACACAACTGTATTACAGTATAaccacacaaaaatacaaaaatgagtCCTTCTTATTATAGGCTACTTGCACTTGTGTAGATTAAATTGTGATGACTGTATacctcgttttttttttttcctcttcatatGCCCATGTGCCTTAAAGAATTATATAGTGCACGGAACTGtgtccttgtttttttctgcagacGTTCAATAGGTTCAGTTGGTTACTGTGAAGTTCAGCTAATATGAAGTCGTAACATAAAAGTAAACATCTCAGCAAAAAGACTGTTACATGTAACGTTGTGTGATAATTCAGAGGGAAACCACTGTAACATGGTCAGATTAAACTGATAGAAACACTGGC

Function

symbol description
myl9 Predicted to be a structural constituent of muscle. Involved in platelet aggregation. Predicted to be located in cytosol. Predicted to be part of myosin II complex. Implicated in familial hypertrophic cardiomyopathy.

NR:

description
PREDICTED: myosin regulatory light polypeptide 9

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K12755 MYL9; myosin regulatory light chain 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919278.2 True 1127 mRNA 0.43 4 14583327 14588319
XM_026919289.2 False 1124 mRNA 0.43 4 14583347 14588319

Neighbor

gene id symbol gene type direction distance location
LOC113531458 LOC108271995 coding upstream 454144 14117983 ~ 14129183 (+)
aldh1l1 LOC108272091,LOC103022276,LOC108427619,LOC105901876,LOC101480024,LOC100704523,LOC102210696,LOC103359410,LOC102300968 coding upstream 469397 14100207 ~ 14113930 (+)
LOC113533298 LOC108272123 coding upstream 524813 14048735 ~ 14058514 (+)
si:dkey-156n14.3 zxdc coding upstream 552635 14022253 ~ 14030692 (+)
LOC113533199 cpne9,LOC106583634,LOC106565248,LOC102776939,LOC106947665,LOC100694516,LOC103466873,LOC106915448 coding upstream 564595 13931140 ~ 14018732 (+)
quo LOC108271936,LOC107582340,LOC107690824 coding downstream 138838 14727157 ~ 14761927 (+)
tgm2b LOC108271939,LOC108427633 coding downstream 187524 14775843 ~ 14789067 (+)
thumpd3 thumpd3 coding downstream 451538 15039857 ~ 15050797 (+)
LOC113536922 LOC108271893,LOC108436255 coding downstream 463989 15052308 ~ 15063316 (+)
LOC113524957 LOC108271998,LOC108436281 coding downstream 476576 15064895 ~ 15104302 (+)
G27309 NA non-coding upstream 27862 14555251 ~ 14555465 (+)
G27275 NA non-coding upstream 86469 14496212 ~ 14496858 (+)
G27269 NA non-coding upstream 92191 14490780 ~ 14491136 (+)
G27262 NA non-coding upstream 112907 14470090 ~ 14470420 (+)
G27164 NA non-coding upstream 411250 14169780 ~ 14172077 (+)
G27450 NA non-coding downstream 204092 14792411 ~ 14792622 (+)
LOC117598849 NA non-coding downstream 225560 14813879 ~ 14850121 (+)
LOC117596203 NA non-coding downstream 288359 14876678 ~ 14880424 (+)
G27679 NA non-coding downstream 518638 15106957 ~ 15107174 (+)
G27733 NA non-coding downstream 688321 15276640 ~ 15278716 (+)
tshba tshb,LOC108271948 other upstream 1077323 13490161 ~ 13506004 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other upstream 1251150 13265788 ~ 13332177 (+)
si:ch211-286o17.1 NA other upstream 1832050 12728993 ~ 12751277 (+)
G25908 LOC108272198 other upstream 2055836 12526170 ~ 12527491 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other upstream 2369670 12204441 ~ 12213657 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other downstream 690503 15278822 ~ 15304494 (+)
LOC113534559 LOC108272085 other downstream 1200307 15788626 ~ 15790444 (+)
slc2a11a LOC108271728,LOC108440316 other downstream 1494970 16083289 ~ 16103248 (+)
mustn1a LOC108272082,LOC108439813 other downstream 1592852 16181171 ~ 16182309 (+)
tomm6 tomm6 other downstream 1809926 16398245 ~ 16401111 (+)

Expression


Co-expression Network