dctn2 (dctn2,LOC107558166)


Basic Information

Item Value
gene id dctn2
gene name dctn2,LOC107558166
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 11486737 ~ 11500516 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919898.2
ctgccgCTGGGTTCACGCCTGACGTTTGCGCTGTTGTCAGCAGCTTGCAAGTCACCAAGGCGGCTCGCTTTTGCTGCTCGTTCGTTTCTTTTCAAACTGGAAATtctgtaacaaaaaaatatcagataCTCGGTAggattgtgttttatttatctgtgtggCAATGGCCGACCCGAAGTACGCCAATCTGCCGGGCATCGCCTCTAACGAGCCGGATGTGTATGAGACCAGCGACCTGCCCGAGGACGATCAGGCGCAGTTTGAGTCGTTTGTGCAAGAGCTGGAAGAGCTGTGTAGTGACAGTGTGGAGCGGATTGTTGTCAATCCCAACGCTGCTTATGACAAGTTCAAAGACAAGCGTGTCGGCACTAAGGGCCTCGACTTCTCGGACCGCATCAGCAAGAGTCGCAGAGTGGGTTATGAGTCTGGAGACTATGAGCTTCTGGGTGAAGGGTGTGGGGTTAAGGAGACTCCTCAGCAGAAGTACCAGCGGCTCGTTAATGAGATTCAGGAGCTCACAGAGGAAGTGGAACATATTCAGacCAGTGCTAAAGAGAGCAGTGCAGAGGAGCGCTTAACGCCAGTGGTTCTGGCTCAGCAGGCGGCCCAGCTCAAACAGCAGCTGGTCTCAGCCCATCTGGACTCATTGCTGGGCCCAAACGCCCACATTAACTTGGCTGACCCAGATGGAGCTCTTGCAAAgcGGTTGATGACTCAGCTCGAGGTGGCTCGGGGTGTGCGTAGCAGTGCTGGGGTGGAGGGGAAATCAGCAGCACCCAAGGGCCCAGATGGAGTTGTGCTGTATGAACTCCACAGCCGGCCTGAACATGAGAAGTTCACAGAGTCTGCCAAGATagcagagatggagaggaggttGGCGGACCTGGAGACTGCAGTAGGTTCTGGATTAGACAAGCGGGGTCCTCTCAGTGCTGGTCTTCAGGGAACCAGTCTAATGgAGACTATGGAGCTGCTGCAGGCTCGAGTCAGTGCTCTGGATGCTGCCACTCTGGACCAGGTTGAAGCCAGACTGCAGAGTGTTTTGgggaagatgaatgaaataGCCAAACACAAGGCAGCAATTGAAGATgctgaaacacaaaacaagGTGGCACAGCTGTATGATATGGTGCAGAAGTGGGATGCCATGGCAACATCCCTCCCTCAGGTGGTCCAGAGACTGATCGCTGTTAAAGAGCTACATGAGCAAGcCATGCAGTTTGGGCAGCTGCTGGCCCATCTGGACACCACACAGCAGATGATCAACAACGCACTGAAGGACAACAGCACACTGCTCACACAGGTGCAGCAGACCATGAAAGAGAACTTGGTTTCAGTTGAAGAGAATTTTGCTGCTTTGGACCAGAGGATGAAGAAACTCtcaaaataagattttttttttccccttgaatGAGcaattaagagagagagattgagggaTGTGGAAGATgatcatttcatacatttaaattcTGTGCTTTaaacattttcctttatttccttggaaataaagtttaaaagaatGGTGTAGTTGAAGGTTATGACCAAATGCCCTTTTACACTACAAAAACTTAGTGACATTTACACCTCTGCTGTTCCTGTCTCTGGAGATAGGTATGTATCTCCTCATATCTGAATCACTTGCCTAAATTCCACTCCCAACTACTGATGGGGTTTTTAAAGAATGAATTCCAGATTGATGATTTTCTTGCCACTTTAACTCAGCTTGAAAGACTGAacttaatgtttttgtgttgtagATGTTTCTGACCCAAGGACTAAATTACATGTTTAAACATTAGTTCACTCTTCTGTGAACAGCAGTCcatgaataaaatgtacacatgaGGAGAGCCACTGCCTCTGGCCAGTGTTTATAGGAGGATGTTTGCTCATTGAGTCAGAAatcatactgtatttatacatCTGGGAGTACCTTTACCTAATCACTCTCAGTTGCTTGTAACTGATTGTATTATGACCAAGATGGATCAGCACAGGTTACTCTGCTTTTGTCATATgcataaactgtttaaaatattgtcTTTCTCCAGATGTGAGAATAAACTAAACATGCTTTGAGAA
>XM_026919906.2
ctgccgCTGGGTTCACGCCTGACGTTTGCGCTGTTGTCAGCAGCTTGCAAGTCACCAAGGCGGCTCGCTTTTGCTGCTCGTTCGTTTCTTTTCAAACTGGAAATtctgtaacaaaaaaatatcagataCTCGGTAggattgtgttttatttatctgtgtggCAATGGCCGACCCGAAGTACGCCAATCTGCCGGGCATCGCCTCTAACGAGCCGGATGTGTATGAGACCAGCGACCTGCCCGAGGACGATCAGGCGCAGTTTGAGTCGTTTGTGCAAGAAGAGCTGTGTAGTGACAGTGTGGAGCGGATTGTTGTCAATCCCAACGCTGCTTATGACAAGTTCAAAGACAAGCGTGTCGGCACTAAGGGCCTCGACTTCTCGGACCGCATCAGCAAGAGTCGCAGAGTGGGTTATGAGTCTGGAGACTATGAGCTTCTGGGTGAAGGGTGTGGGGTTAAGGAGACTCCTCAGCAGAAGTACCAGCGGCTCGTTAATGAGATTCAGGAGCTCACAGAGGAAGTGGAACATATTCAGacCAGTGCTAAAGAGAGCAGTGCAGAGGAGCGCTTAACGCCAGTGGTTCTGGCTCAGCAGGCGGCCCAGCTCAAACAGCAGCTGGTCTCAGCCCATCTGGACTCATTGCTGGGCCCAAACGCCCACATTAACTTGGCTGACCCAGATGGAGCTCTTGCAAAgcGGTTGATGACTCAGCTCGAGGTGGCTCGGGGTGTGCGTAGCAGTGCTGGGGTGGAGGGGAAATCAGCAGCACCCAAGGGCCCAGATGGAGTTGTGCTGTATGAACTCCACAGCCGGCCTGAACATGAGAAGTTCACAGAGTCTGCCAAGATagcagagatggagaggaggttGGCGGACCTGGAGACTGCAGTAGGTTCTGGATTAGACAAGCGGGGTCCTCTCAGTGCTGGTCTTCAGGGAACCAGTCTAATGgAGACTATGGAGCTGCTGCAGGCTCGAGTCAGTGCTCTGGATGCTGCCACTCTGGACCAGGTTGAAGCCAGACTGCAGAGTGTTTTGgggaagatgaatgaaataGCCAAACACAAGGCAGCAATTGAAGATgctgaaacacaaaacaagGTGGCACAGCTGTATGATATGGTGCAGAAGTGGGATGCCATGGCAACATCCCTCCCTCAGGTGGTCCAGAGACTGATCGCTGTTAAAGAGCTACATGAGCAAGcCATGCAGTTTGGGCAGCTGCTGGCCCATCTGGACACCACACAGCAGATGATCAACAACGCACTGAAGGACAACAGCACACTGCTCACACAGGTGCAGCAGACCATGAAAGAGAACTTGGTTTCAGTTGAAGAGAATTTTGCTGCTTTGGACCAGAGGATGAAGAAACTCtcaaaataagattttttttttccccttgaatGAGcaattaagagagagagattgagggaTGTGGAAGATgatcatttcatacatttaaattcTGTGCTTTaaacattttcctttatttccttggaaataaagtttaaaagaatGGTGTAGTTGAAGGTTATGACCAAATGCCCTTTTACACTACAAAAACTTAGTGACATTTACACCTCTGCTGTTCCTGTCTCTGGAGATAGGTATGTATCTCCTCATATCTGAATCACTTGCCTAAATTCCACTCCCAACTACTGATGGGGTTTTTAAAGAATGAATTCCAGATTGATGATTTTCTTGCCACTTTAACTCAGCTTGAAAGACTGAacttaatgtttttgtgttgtagATGTTTCTGACCCAAGGACTAAATTACATGTTTAAACATTAGTTCACTCTTCTGTGAACAGCAGTCcatgaataaaatgtacacatgaGGAGAGCCACTGCCTCTGGCCAGTGTTTATAGGAGGATGTTTGCTCATTGAGTCAGAAatcatactgtatttatacatCTGGGAGTACCTTTACCTAATCACTCTCAGTTGCTTGTAACTGATTGTATTATGACCAAGATGGATCAGCACAGGTTACTCTGCTTTTGTCATATgcataaactgtttaaaatattgtcTTTCTCCAGATGTGAGAATAAACTAAACATGCTTTGAGAA
>XM_026919915.2
ctgccgCTGGGTTCACGCCTGACGTTTGCGCTGTTGTCAGCAGCTTGCAAGTCACCAAGGCGGCTCGCTTTTGCTGCTCGTTCGTTTCTTTTCAAACTGGAAATtctgtaacaaaaaaatatcagataCTCGGTAggattgtgttttatttatctgtgtggCAATGGCCGACCCGAAGTACGCCAATCTGCCGGGCATCGCCTCTAACGAGCCGGATGTGTATGAGACCAGCGACCTGCCCGAGGACGATCAGGCGCAGTTTGAGTCGGAGCTGGAAGAGCTGTGTAGTGACAGTGTGGAGCGGATTGTTGTCAATCCCAACGCTGCTTATGACAAGTTCAAAGACAAGCGTGTCGGCACTAAGGGCCTCGACTTCTCGGACCGCATCAGCAAGAGTCGCAGAGTGGGTTATGAGTCTGGAGACTATGAGCTTCTGGGTGAAGGGTGTGGGGTTAAGGAGACTCCTCAGCAGAAGTACCAGCGGCTCGTTAATGAGATTCAGGAGCTCACAGAGGAAGTGGAACATATTCAGacCAGTGCTAAAGAGAGCAGTGCAGAGGAGCGCTTAACGCCAGTGGTTCTGGCTCAGCAGGCGGCCCAGCTCAAACAGCAGCTGGTCTCAGCCCATCTGGACTCATTGCTGGGCCCAAACGCCCACATTAACTTGGCTGACCCAGATGGAGCTCTTGCAAAgcGGTTGATGACTCAGCTCGAGGTGGCTCGGGGTGTGCGTAGCAGTGCTGGGGTGGAGGGGAAATCAGCAGCACCCAAGGGCCCAGATGGAGTTGTGCTGTATGAACTCCACAGCCGGCCTGAACATGAGAAGTTCACAGAGTCTGCCAAGATagcagagatggagaggaggttGGCGGACCTGGAGACTGCAGTAGGTTCTGGATTAGACAAGCGGGGTCCTCTCAGTGCTGGTCTTCAGGGAACCAGTCTAATGgAGACTATGGAGCTGCTGCAGGCTCGAGTCAGTGCTCTGGATGCTGCCACTCTGGACCAGGTTGAAGCCAGACTGCAGAGTGTTTTGgggaagatgaatgaaataGCCAAACACAAGGCAGCAATTGAAGATgctgaaacacaaaacaagGTGGCACAGCTGTATGATATGGTGCAGAAGTGGGATGCCATGGCAACATCCCTCCCTCAGGTGGTCCAGAGACTGATCGCTGTTAAAGAGCTACATGAGCAAGcCATGCAGTTTGGGCAGCTGCTGGCCCATCTGGACACCACACAGCAGATGATCAACAACGCACTGAAGGACAACAGCACACTGCTCACACAGGTGCAGCAGACCATGAAAGAGAACTTGGTTTCAGTTGAAGAGAATTTTGCTGCTTTGGACCAGAGGATGAAGAAACTCtcaaaataagattttttttttccccttgaatGAGcaattaagagagagagattgagggaTGTGGAAGATgatcatttcatacatttaaattcTGTGCTTTaaacattttcctttatttccttggaaataaagtttaaaagaatGGTGTAGTTGAAGGTTATGACCAAATGCCCTTTTACACTACAAAAACTTAGTGACATTTACACCTCTGCTGTTCCTGTCTCTGGAGATAGGTATGTATCTCCTCATATCTGAATCACTTGCCTAAATTCCACTCCCAACTACTGATGGGGTTTTTAAAGAATGAATTCCAGATTGATGATTTTCTTGCCACTTTAACTCAGCTTGAAAGACTGAacttaatgtttttgtgttgtagATGTTTCTGACCCAAGGACTAAATTACATGTTTAAACATTAGTTCACTCTTCTGTGAACAGCAGTCcatgaataaaatgtacacatgaGGAGAGCCACTGCCTCTGGCCAGTGTTTATAGGAGGATGTTTGCTCATTGAGTCAGAAatcatactgtatttatacatCTGGGAGTACCTTTACCTAATCACTCTCAGTTGCTTGTAACTGATTGTATTATGACCAAGATGGATCAGCACAGGTTACTCTGCTTTTGTCATATgcataaactgtttaaaatattgtcTTTCTCCAGATGTGAGAATAAACTAAACATGCTTTGAGAA
>XM_026919922.2
tgccgCTGGGTTCACGCCTGACGTTTGCGCTGTTGTCAGCAGCTTGCAAGTCACCAAGGCGGCTCGCTTTTGCTGCTCGTTCGTTTCTTTTCAAACTGGAAATtctgtaacaaaaaaatatcagataCTCGGTAggattgtgttttatttatctgtgtggCAATGGCCGACCCGAAGTACGCCAATCTGCCGGGCATCGCCTCTAACGAGCCGGATGTGTATGAGACCAGCGACCTGCCCGAGGACGATCAGGCGCAGTTTGAGTCGGAAGAGCTGTGTAGTGACAGTGTGGAGCGGATTGTTGTCAATCCCAACGCTGCTTATGACAAGTTCAAAGACAAGCGTGTCGGCACTAAGGGCCTCGACTTCTCGGACCGCATCAGCAAGAGTCGCAGAGTGGGTTATGAGTCTGGAGACTATGAGCTTCTGGGTGAAGGGTGTGGGGTTAAGGAGACTCCTCAGCAGAAGTACCAGCGGCTCGTTAATGAGATTCAGGAGCTCACAGAGGAAGTGGAACATATTCAGacCAGTGCTAAAGAGAGCAGTGCAGAGGAGCGCTTAACGCCAGTGGTTCTGGCTCAGCAGGCGGCCCAGCTCAAACAGCAGCTGGTCTCAGCCCATCTGGACTCATTGCTGGGCCCAAACGCCCACATTAACTTGGCTGACCCAGATGGAGCTCTTGCAAAgcGGTTGATGACTCAGCTCGAGGTGGCTCGGGGTGTGCGTAGCAGTGCTGGGGTGGAGGGGAAATCAGCAGCACCCAAGGGCCCAGATGGAGTTGTGCTGTATGAACTCCACAGCCGGCCTGAACATGAGAAGTTCACAGAGTCTGCCAAGATagcagagatggagaggaggttGGCGGACCTGGAGACTGCAGTAGGTTCTGGATTAGACAAGCGGGGTCCTCTCAGTGCTGGTCTTCAGGGAACCAGTCTAATGgAGACTATGGAGCTGCTGCAGGCTCGAGTCAGTGCTCTGGATGCTGCCACTCTGGACCAGGTTGAAGCCAGACTGCAGAGTGTTTTGgggaagatgaatgaaataGCCAAACACAAGGCAGCAATTGAAGATgctgaaacacaaaacaagGTGGCACAGCTGTATGATATGGTGCAGAAGTGGGATGCCATGGCAACATCCCTCCCTCAGGTGGTCCAGAGACTGATCGCTGTTAAAGAGCTACATGAGCAAGcCATGCAGTTTGGGCAGCTGCTGGCCCATCTGGACACCACACAGCAGATGATCAACAACGCACTGAAGGACAACAGCACACTGCTCACACAGGTGCAGCAGACCATGAAAGAGAACTTGGTTTCAGTTGAAGAGAATTTTGCTGCTTTGGACCAGAGGATGAAGAAACTCtcaaaataagattttttttttccccttgaatGAGcaattaagagagagagattgagggaTGTGGAAGATgatcatttcatacatttaaattcTGTGCTTTaaacattttcctttatttccttggaaataaagtttaaaagaatGGTGTAGTTGAAGGTTATGACCAAATGCCCTTTTACACTACAAAAACTTAGTGACATTTACACCTCTGCTGTTCCTGTCTCTGGAGATAGGTATGTATCTCCTCATATCTGAATCACTTGCCTAAATTCCACTCCCAACTACTGATGGGGTTTTTAAAGAATGAATTCCAGATTGATGATTTTCTTGCCACTTTAACTCAGCTTGAAAGACTGAacttaatgtttttgtgttgtagATGTTTCTGACCCAAGGACTAAATTACATGTTTAAACATTAGTTCACTCTTCTGTGAACAGCAGTCcatgaataaaatgtacacatgaGGAGAGCCACTGCCTCTGGCCAGTGTTTATAGGAGGATGTTTGCTCATTGAGTCAGAAatcatactgtatttatacatCTGGGAGTACCTTTACCTAATCACTCTCAGTTGCTTGTAACTGATTGTATTATGACCAAGATGGATCAGCACAGGTTACTCTGCTTTTGTCATATgcataaactgtttaaaatattgtcTTTCTCCAGATGTGAGAATAAACTAAACATGCTTTGAGAA

Function

symbol description
dctn2 Predicted to enable cytoskeletal motor activity. Acts upstream of or within several processes, including P granule organization; neurogenesis; and photoreceptor cell maintenance. Predicted to be located in vesicle. Predicted to be part of dynactin complex. Predicted to be active in centrosome and cytoplasm. Orthologous to human DCTN2 (dynactin subunit 2).

NR:

description
dynactin subunit 2

GO:

id name namespace
GO:0001754 eye photoreceptor cell differentiation biological_process
GO:0030719 P granule organization biological_process
GO:0060117 auditory receptor cell development biological_process
GO:0045494 photoreceptor cell maintenance biological_process
GO:0007017 microtubule-based process biological_process
GO:0035088 establishment or maintenance of apical/basal cell polarity biological_process
GO:0010001 glial cell differentiation biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0005869 dynactin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0030286 dynein complex cellular_component
GO:0031982 vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003774 motor activity molecular_function

KEGG:

id description
K10424 DCTN2; dynactin 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919898.2 True 2085 mRNA 0.47 16 11486737 11500516
XM_026919906.2 False 2079 mRNA 0.47 15 11486737 11500516
XM_026919915.2 False 2076 mRNA 0.47 15 11486737 11500516
XM_026919922.2 False 2069 mRNA 0.47 14 11486738 11500516

Neighbor

gene id symbol gene type direction distance location
LOC117595871 NA coding upstream 30647 11452072 ~ 11456090 (+)
igsf8 igsf8,LOC108431823 coding upstream 67297 11408776 ~ 11419440 (+)
sp7 sp7 coding upstream 129084 11353572 ~ 11357653 (+)
stmn3 stmn3 coding upstream 151239 11330363 ~ 11335498 (+)
arfrp1 arfrp1,LOC102305184 coding upstream 159150 11322770 ~ 11327587 (+)
ddit3 ddit3 coding downstream 16978 11517494 ~ 11520910 (+)
arhgap9 arhgap9 coding downstream 35813 11536329 ~ 11579131 (+)
LOC113526407 r3hdm2 coding downstream 195115 11695631 ~ 11753218 (+)
LOC113534407 stac3 coding downstream 254047 11754563 ~ 11760603 (+)
LOC113547077 nxph4,LOC107556734,LOC107758187,LOC107676147,LOC107735585 coding downstream 332191 11832707 ~ 11892740 (+)
G25387 NA non-coding upstream 1371 11484801 ~ 11485366 (+)
G25374 NA non-coding upstream 25392 11461122 ~ 11461345 (+)
G25372 NA non-coding upstream 26266 11460261 ~ 11460471 (+)
G25371 NA non-coding upstream 28733 11457778 ~ 11458004 (+)
G25357 kif5a,kif5ab,LOC106566150,LOC107558152,LOC107681593,LOC106582664 non-coding upstream 41301 11445124 ~ 11445436 (+)
G25408 NA non-coding downstream 79222 11579738 ~ 11580030 (+)
G25410 NA non-coding downstream 84891 11585407 ~ 11585643 (+)
G25422 gli1 non-coding downstream 118653 11619169 ~ 11623069 (+)
G25434 NA non-coding downstream 161714 11662230 ~ 11663094 (+)
LOC117599151 NA non-coding downstream 168303 11668819 ~ 11688224 (+)
G25029 NA other upstream 578165 10906200 ~ 10908572 (+)
G24500 NA other upstream 1288282 10197966 ~ 10198455 (+)
manbal manbal other upstream 1545550 9938365 ~ 9941187 (+)
LOC113530691 LOC108410934,LOC108272263,LOC107696444,LOC107587591,LOC107744363 other upstream 1563572 9874708 ~ 9923165 (+)
LOC113532547 LOC108271588 other upstream 1883231 9591941 ~ 9603506 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other downstream 703925 12204441 ~ 12213657 (+)
G25908 LOC108272198 other downstream 1025654 12526170 ~ 12527491 (+)
si:ch211-286o17.1 NA other downstream 1228477 12728993 ~ 12751277 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other downstream 1765272 13265788 ~ 13332177 (+)
tshba tshb,LOC108271948 other downstream 1989645 13490161 ~ 13506004 (+)

Expression


Co-expression Network