LOC113530143 (LOC100304607,LOC107667340)


Basic Information

Item Value
gene id LOC113530143
gene name LOC100304607,LOC107667340
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16231892 ~ 16233338 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919974.2
ACAGGAAGTTTGCCAGCACTCAGCCACGTGATGGCGTTTTATGTGCTTGTTTAGagaaattaaaccaaatatatttTGGACGTCTTTTGTGATCTAGTTCAAACTAACCTCTTTTCCAgtaatttacacatttaacgTTCATCGTCTGTCGCCAACTCTGTGCGTCTGTGTACAGCTTCATAATAACTGGTGCTGTAAGTCGCCTCCCCTACTCGCTATTGCGTGCTATGTGCGGGGTGAGAGCTTCTGTTTCTCCGCATTTTTCCGAGTGGCGCAGCTCATGTGGCCTTCCCGCACAGCACTGAGCACGGCGTCGATTGCACTTCCAGTGCAGAACGATCAGGATGCGAATCTGGCCAGAATGTGCGAGATAACAGATCTCACACTAACAGCAAGAAACACAACTCGAGGCATGCACCTGCTGGCAATGTTGTTGTTCTCAATCACGTCCGCGCGTCGTTGATTAAATAGCGATCATCCTCACCGACATCAACGTCTCAGAGCGGAGTTAAAGAGCATCTCAGAGCTTCAGAGCGTCAGGGTTAAGCATGTCTGCTCAGGCGGAGGAAAGTGCACCAGAAGCAGCGCCTGCAAAACCTGCAAAACCTGTGGCCAAGAAGAAGAGACCCGCCAGCAAAGCAAAGCCTGCCTCTGcagaaaaaaagtacaaaaagaaGAAGGGTAAAGGGCCCGGAAAGTACAGCCAGCTGGTGATCGAGGCTATTCAAACCTTGGGCGAGAAAAACGGCTGGTCTCTTTTTAAGATCTATAATGAGGCGAAGAAAGTGAGCTGGTTTGACCAGAAGCACGGGCGCGTGTACCTGCGCTACTCCATCCGCGCGCTGCTGCAGAACGACACGCTGGTGCAGGTGAAGGGGCTGGGCGCCAACGGCTCCTTCAAGCTCAACAAGAACAAGTTCACCTCCAGCACCAAGAAGACCTCTGGAAAGCCGAAGAAGACTGCGAAACCGGCCAAAAAGCCAGGCAAAAAAGCAgcggagaagaagaaaagcgtCAGCGGCGTGAAGAAGGCGACTCCAGCCGCCAAGAAAACCTCCAAAGCCAAGAAAGCGGATAAAAGTCCAGCAGTCGCTGCCAAGAAGGCCAGCAAGCCCAAGAAAGCTAAGCAGGAGAAAAAGACTGTTAAGAAAGCTTaaactgtgtgtagtgtgcatgCTTGAAGCTGTGTTAAAAGTACTTCCCTGACTGGAAGCACTGCGCTGCGTGTAAATAAGCCTCCTGCCCGCAGGCTTCATTAAGAAGGATGTGCacagtgttttacagtgtacTAGTCATATTGTTCTCACTGTTTTACTCATGAAGACAAATGTAAATACCTGTACAAAATACCTTTTGTAATGTCTGCGCGTTTGTTACTATTTCTTTTCTACTACTAGTTAAGATTAATTGCTTatggtttctttttaaataaaatagtaaaagaaaa

Function

NR:

description
nonspecific cytotoxic cell cationic anti-microbial protein-1

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K11275 H1_5; histone H1/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919974.2 True 1447 mRNA 0.48 1 16231892 16233338

Neighbor

gene id symbol gene type direction distance location
LOC113527941 rab7a,LOC108271868,LOC106518505,LOC101061812,LOC105017315,LOC108254780 coding upstream 1110 16227005 ~ 16230782 (+)
eefsec eefsec,LOC107667374,LOC107584423,LOC107568193 coding upstream 36632 16188335 ~ 16195260 (+)
rft1 rft1,LOC107721169,LOC107568194,LOC107584424,LOC107673548 coding upstream 51758 16175199 ~ 16180134 (+)
sirt4 sirt4 coding upstream 60668 16166729 ~ 16171224 (+)
zgc:172271 LOC108271876 coding upstream 65861 16157525 ~ 16166031 (+)
arpc4 arpc4,LOC103358720,LOC107721188,LOC100696600 coding downstream 687 16234025 ~ 16239942 (+)
myhb myhb,LOC108271865,LOC108440470,LOC107721187,LOC108254796,LOC107568178,LOC108443910,LOC107667337 coding downstream 11969 16245307 ~ 16258431 (+)
p4htm p4htm,LOC108440486 coding downstream 26094 16259432 ~ 16268579 (+)
kbtbd12 kbtbd12,LOC107721181,LOC107712091,LOC107673613,LOC107667403 coding downstream 50615 16283953 ~ 16288642 (+)
akap14 akap14 coding downstream 67930 16301268 ~ 16302456 (+)
G28287 NA non-coding upstream 76648 16154986 ~ 16155244 (+)
G28162 NA non-coding upstream 108752 16122896 ~ 16123140 (+)
G28160 NA non-coding upstream 109560 16121977 ~ 16122332 (+)
G28156 NA non-coding upstream 125620 16106043 ~ 16106272 (+)
G28150 NA non-coding upstream 155342 16073222 ~ 16076550 (+)
G28361 NA non-coding downstream 35371 16268709 ~ 16269552 (+)
G28402 LOC108271943 non-coding downstream 100113 16333451 ~ 16334652 (+)
G28404 NA non-coding downstream 102854 16336192 ~ 16336694 (+)
G28405 NA non-coding downstream 112307 16345645 ~ 16346086 (+)
G28410 NA non-coding downstream 124744 16358082 ~ 16361347 (+)
mustn1a LOC108272082,LOC108439813 other upstream 49583 16181171 ~ 16182309 (+)
slc2a11a LOC108271728,LOC108440316 other upstream 128644 16083289 ~ 16103248 (+)
LOC113534559 LOC108272085 other upstream 441448 15788626 ~ 15790444 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other upstream 927398 15278822 ~ 15304494 (+)
tshba tshb,LOC108271948 other upstream 2725888 13490161 ~ 13506004 (+)
tomm6 tomm6 other downstream 164907 16398245 ~ 16401111 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other downstream 2541432 18774770 ~ 18835721 (+)
trnai-aau NA other downstream 2584064 18817402 ~ 18817475 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other downstream 2699345 18932683 ~ 18948737 (+)
LOC113533886 espnl other downstream 2827759 19061097 ~ 19087211 (+)

Expression


Co-expression Network