LOC113530419 (ccdc122)


Basic Information

Item Value
gene id LOC113530419
gene name ccdc122
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5140401 ~ 5154427 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920371.2
gatTGTTCTGGATGTTCATTTGGACACAGATCCCCACACCTCACTGCATTGTCCGTTCCATTACATGACTCGCGCGCTTACTCTTCGGTCCAAAATAACAGCTACCTTATAGCTAGTCAGACAGCTAACTATGTCCAGCAAGAAAAGATCCTTCAGTGAGCAGGAGTTCACACTCTGCAGTGCACTTGTAGAGGCTACACAACAGGGGGAGTCTGAAGCTGCAGAGCTAAAGGAgaaacagcacatcctaaacTCACTTCAGGATACACTATCAAAGATAGTAAAGAGCTATGACACTGTTTCCAGTAACATTAAACTGAAGGAGCAACAAATCAGTGGCATCACTAATGAGATTGAACAGATACACAGGCAAAATGAGAGACAGCAAACAGAGATACAGGTGATCCAGTTGGAAAACATGAAACTCAGCTACAGCATTGAAGAGCAGTTGGAGAGCTCACATTTCTTGCTGGCTTGGTACAACACTTACCATAATAAAATGGAGAGCTACAAAATGTCTATCTCTGCACTGGAGAGCCATGCAACTATTCATAAGGAGTTGACTGAAAAAAGGGAAGAGGTGAAGAGACTCAAGGAGTACAGAGATAAACTGAAGGTGGACTTACAGAATCCAGAGGGAAATGCTATACGACAGTCTCAGAAAGAAACTGACAACTTTAAGGCCCAGATACATAACACAAAAGAGCTTGTAAGAAGAAAAGGGATACTattggagaaagagaaaaagaaccATTCACAACTGAGAAAGGATATAGCAATTCACAACAGAAGATGCGAGGCCAACGTGAAACGGCTTTGCTGCCAGCTGGACAAGGCTCAATCCAGTCACGGAGAGCTGAGCAGTGACATCTTCCATATGGAGAAAGAGGTGGAACATCTCAAGAAGCAGCTAGGTACCTCATACAATGTAGAATGAATCAGTGTGCAAATGCACTCTCTGGTATTAATCCAGTTTGTCCATACAGTGCATGGtacaatatgacaatatgatTTGTG

Function

symbol description
ccdc122 Orthologous to human CCDC122 (coiled-coil domain containing 122).

NR:

description
PREDICTED: coiled-coil domain-containing protein 122 isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920371.2 True 1017 mRNA 0.43 5 5140401 5154427

Neighbor

gene id symbol gene type direction distance location
wbp4 wbp4 coding upstream 12805 5122720 ~ 5127596 (+)
LOC113545806 NA coding upstream 423128 4708587 ~ 4717273 (+)
stk11ip stk11ip,LOC107663072 coding upstream 448373 4651006 ~ 4692028 (+)
LOC113545978 NA coding upstream 480278 4660009 ~ 4660123 (+)
igfbp5a LOC108273291 coding upstream 553205 4566734 ~ 4587196 (+)
nhej1 nhej1 coding downstream 85418 5239845 ~ 5255979 (+)
chmp4ba chmp4b,LOC108433697,LOC108272732,LOC106511320,LOC106566692,LOC107666153 coding downstream 322323 5476750 ~ 5489524 (+)
ergic3 ergic3,LOC107554160,LOC107685813,LOC107729749,LOC107666084 coding downstream 368497 5522924 ~ 5538437 (+)
si:dkey-6e2.2 LOC108272599,LOC108433672 coding downstream 525639 5680066 ~ 5700669 (+)
ripor3 LOC108271800,LOC107596833 coding downstream 735154 5889581 ~ 5948452 (+)
LOC117595874 NA non-coding upstream 221767 4917145 ~ 4918634 (+)
LOC113545969 NA non-coding upstream 226608 4911803 ~ 4913793 (+)
G21791 NA non-coding upstream 238401 4879209 ~ 4902000 (+)
G21771 NA non-coding upstream 306343 4830903 ~ 4834058 (+)
G21763 NA non-coding upstream 331974 4808123 ~ 4808427 (+)
G21903 NA non-coding downstream 55438 5209865 ~ 5210117 (+)
G21928 NA non-coding downstream 103175 5257602 ~ 5257827 (+)
G21973 NA non-coding downstream 175468 5329895 ~ 5330285 (+)
G21982 NA non-coding downstream 180221 5334648 ~ 5334864 (+)
G22032 NA non-coding downstream 281339 5435766 ~ 5437469 (+)
G21835 NA other upstream 51823 5088134 ~ 5088578 (+)
spega speg other upstream 380756 4754266 ~ 4759645 (+)
trnah-gug_1 NA other upstream 788653 4351677 ~ 4351748 (+)
slc32a1 slc32a1,LOC108272428,LOC108436412 other upstream 812541 4275073 ~ 4327860 (+)
LOC113545962 NA other upstream 1398095 3728652 ~ 3742306 (+)
G21901 NA other downstream 53919 5208346 ~ 5208864 (+)
mych LOC108272607 other downstream 339295 5493722 ~ 5552974 (+)
atp5f1e NA other downstream 347218 5501645 ~ 5503231 (+)
rbl1 rbl1,LOC107723925,LOC107666117,LOC107596834,LOC107708126 other downstream 563103 5717530 ~ 5756688 (+)
tmem74b NA other downstream 813771 5968198 ~ 5976002 (+)

Expression


Co-expression Network