lmo4b (lmo4,lmo4b,LOC103026253,LOC107593176)


Basic Information

Item Value
gene id lmo4b
gene name lmo4,lmo4b,LOC103026253,LOC107593176
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18449257 ~ 18464571 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920872.2
GACACATGTAGAGCAAAAGCGGAGACGGAGCGCTGAGCAGGACAGAGAGCTGGAGAAGACGGAGGAGTGCGAGCCACGCAGACACACCGCCACACCGACACACCGCTTCACGCGAAATGCTCGAGTCGTTCCTGGATCACGTTTAACGACAACACGGACGTTTAATCATCGCCAGAGGAAAGAATCCAAGAATAAAACGTGACGGCACCAGTGGAAATATAATCTGAAAACTCCATTTGgtcctctgtgtttgtgtgcgtgcgtgtgtgcgcgcgctaaggcgcgcgtgtgtgtttgcacagaaAAGCTGCCTGCACCGCACTGGACTTTAAATTCGGACTTTTCTCTCCTCCAGCGCGCGCTCTGAGACTATTAtccttattgttattattattgttattattttgaaaagCCCGCGTTGTAAGATTATCGGAATCCCCGCGACGGAAAGATCTGCGCTTGGTAtctgagagagataaagagcaGAGACCATGGTGAACCCAGGAGGCAGTGCTCAGTCCGCACCAGTTGGAGCTGGTACCATGTCGTGGAAGCGCTGCGCGGGCTGTGGAGGGAAGATCGCCGACCGCTTCCTCCTCTACGCCATGGACAGCTACTGGCACAGCCGCTGCCTCAAATGCTCGTGCTGCCAAGCCCAGCTAGGAGAGATCGGCACCTCCTGCTACACCAAGAGCGGCATGATCCTGTGCAGAAATGACTACATCAGgttattCGGGAACAGCGGGGCATGCAGTGCCTGTGGCCAGTCCATTCCAGCCAGTGAACTGGTCATGAGGGCACAGGGCAATGTGTACCACCTCAAGTGTTTCACGTGTTCTACCTGCCGGAACCGGCTGGTCCCTGGAGACCGGTTCCACTACATCAACGGCAGCTTGTTCTGCGAACACGATAGACCCACAGCGCTCATGAACGGCCACTTGAGTTCACTGCAGACGAACCCACTACTTCCTGATCAGAAGgTGTGTTAGGAGGAAGGAGTTGCTCAAAGCGGGATGTGTGCCTTCATTCCAGCCCTCGCTCATTGTCACTGAAGATCTCTCAGTCCTGACCTGACCGCCGCCCCCACCCTCCTTTCCTATTCACTTCTGGAGTCGCAGCACTACCCCAGCTTCCCCTTTTGATATCCCAGAATTCCTCTCTACACCTCCCCCCCCTGACCTGACCCCTGATCATAGGCGGATTCCCGGCGTTGCGGCGCTTCCAATGGAAATTTGAGGACTCCATGACTTACAGGAGACTGATCAGACCCTGTGGGACtcaaagacagtgagagagagaaagaaagagagagggaggcagagagagtgaaaagagagaactAAACCAAGCAGAAGGACATTTTggataagagaaagaaagagaaaaggagagtgTCAGACAAATGAAGCTAATCAGCTGCAGCTTTTCGAATCGCAGTTCTTACATTTGTTTGATAATTAACAGGGGCAAAACAGactgctttttttcctttttacttctttttttctccttactTCCTTATctattctctttttcttcaaCACTCTATCTCTGCtttctatattttaaatgttgtaaaGGGAATGTGTTTCGTTTTTCGGGTGATTCAAGAATCAAAAAGACTGGGTATCCGTGGCTTTTTTGTGCAAATCGAATCATGAACACTCTTGGTGTATTTGTAAAACTATCACATATGTatgcatgtaaatgtttttgtccCAACGTGGCTACCGTACATCCTCCACGTGACCCCGCCCCTTCCTACCGGAACctgaaaccatggcaacaaaGCTCATAGCTGTCCACTTGTAAAtgctgaatgagagagaaatctatttgtgatattttcagAGACATTGGCTCCAGTATGgtgtatttaattaataaaaatttaagatttaaaagCA
>XM_026920882.2
GACACATGTAGAGCAAAAGCGGAGACGGAGCGCTGAGCAGGACAGAGAGCTGGAGAAGACGGAGGAGTGCGAGCCACGCAGACACACCGCCACACCGACACACCGCTTCACGCGAAATGCTCGAGTCGTTCCTGGATCACGTTTAACGACAACACGGACGTTTAATCATCGCCAGAGGAAAGAATCCAAGAATAAAACGTGACGGCACCAGTGGAAATATAATCTGAAAACTCCATTTGgtcctctgtgtttgtgtgcgtgcgtgtgtgcgcgcgctaaggcgcgcgtgtgtgtttgcacagaaAAGCTGCCTGCACCGCACTGGACTTTAAATTCGGACTTTTCTCTCCTCCAGCGCGCGCTCTGAGACTATTAtccttattgttattattattgttattattttgaaaagCCCGCGTTGTAAGATTATCGGAATCCCCGCGACGGAAAGATCTGCGCTTGGTAtctgagagagataaagagAGACCATGGTGAACCCAGGAGGCAGTGCTCAGTCCGCACCAGTTGGAGCTGGTACCATGTCGTGGAAGCGCTGCGCGGGCTGTGGAGGGAAGATCGCCGACCGCTTCCTCCTCTACGCCATGGACAGCTACTGGCACAGCCGCTGCCTCAAATGCTCGTGCTGCCAAGCCCAGCTAGGAGAGATCGGCACCTCCTGCTACACCAAGAGCGGCATGATCCTGTGCAGAAATGACTACATCAGgttattCGGGAACAGCGGGGCATGCAGTGCCTGTGGCCAGTCCATTCCAGCCAGTGAACTGGTCATGAGGGCACAGGGCAATGTGTACCACCTCAAGTGTTTCACGTGTTCTACCTGCCGGAACCGGCTGGTCCCTGGAGACCGGTTCCACTACATCAACGGCAGCTTGTTCTGCGAACACGATAGACCCACAGCGCTCATGAACGGCCACTTGAGTTCACTGCAGACGAACCCACTACTTCCTGATCAGAAGgTGTGTTAGGAGGAAGGAGTTGCTCAAAGCGGGATGTGTGCCTTCATTCCAGCCCTCGCTCATTGTCACTGAAGATCTCTCAGTCCTGACCTGACCGCCGCCCCCACCCTCCTTTCCTATTCACTTCTGGAGTCGCAGCACTACCCCAGCTTCCCCTTTTGATATCCCAGAATTCCTCTCTACACCTCCCCCCCCTGACCTGACCCCTGATCATAGGCGGATTCCCGGCGTTGCGGCGCTTCCAATGGAAATTTGAGGACTCCATGACTTACAGGAGACTGATCAGACCCTGTGGGACtcaaagacagtgagagagagaaagaaagagagagggaggcagagagagtgaaaagagagaactAAACCAAGCAGAAGGACATTTTggataagagaaagaaagagaaaaggagagtgTCAGACAAATGAAGCTAATCAGCTGCAGCTTTTCGAATCGCAGTTCTTACATTTGTTTGATAATTAACAGGGGCAAAACAGactgctttttttcctttttacttctttttttctccttactTCCTTATctattctctttttcttcaaCACTCTATCTCTGCtttctatattttaaatgttgtaaaGGGAATGTGTTTCGTTTTTCGGGTGATTCAAGAATCAAAAAGACTGGGTATCCGTGGCTTTTTTGTGCAAATCGAATCATGAACACTCTTGGTGTATTTGTAAAACTATCACATATGTatgcatgtaaatgtttttgtccCAACGTGGCTACCGTACATCCTCCACGTGACCCCGCCCCTTCCTACCGGAACctgaaaccatggcaacaaaGCTCATAGCTGTCCACTTGTAAAtgctgaatgagagagaaatctatttgtgatattttcagAGACATTGGCTCCAGTATGgtgtatttaattaataaaaatttaagatttaaaagCA

Function

symbol description
lmo4b Predicted to enable metal ion binding activity. Is expressed in several structures, including mesoderm; nervous system; optic vesicle; presumptive neural retina; and yolk syncytial layer. Orthologous to human LMO4 (LIM domain only 4).
lmo4 Predicted to enable metal ion binding activity. Predicted to be involved in neural tube closure; positive regulation of kinase activity; and regulation of cell migration. Predicted to act upstream of or within several processes, including cell differentiation in spinal cord; thymus development; and ventricular septum development. Predicted to be located in cell leading edge and nucleus. Predicted to be part of transcription regulator complex.

NR:

description
LIM domain transcription factor LMO4

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24099 LMO4; LIM domain transcription factor LMO4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920872.2 True 1907 mRNA 0.49 5 18449257 18464571
XM_026920882.2 False 1904 mRNA 0.49 5 18449257 18464571

Neighbor

gene id symbol gene type direction distance location
lrrc8c lrrc8c,LOC108272152,LOC108413226,LOC103030093,LOC107749978,LOC107593158,LOC107698887 coding downstream 322345 18116405 ~ 18126912 (-)
lrrc8db lrrc8db,LOC108272026,LOC108413222,LOC107730703,LOC107749977,LOC107564626,LOC107675437 coding downstream 342978 18094167 ~ 18106279 (-)
znf326 znf326 coding downstream 358941 18083721 ~ 18090316 (-)
LOC117599332 NA coding downstream 653906 17794638 ~ 17795351 (-)
brdt brdt,LOC107564438,LOC106584160 coding downstream 793047 17637150 ~ 17656210 (-)
hs2st1b hs2st1b,LOC108271533,LOC108427652,LOC107694133,LOC107679861,LOC107557741,LOC106560611 coding upstream 36967 18501538 ~ 18586226 (-)
trnae-cuc_6 NA coding upstream 112653 18577224 ~ 18577295 (-)
LOC113534471 LOC108271530,LOC108427638 coding upstream 151406 18615977 ~ 18623608 (-)
sox14 sox14,LOC103365676,LOC100695210 coding upstream 224027 18688598 ~ 18691082 (-)
hdlbpa hdlbp coding upstream 355486 18820057 ~ 18835789 (-)
G29237 NA non-coding downstream 606437 17784475 ~ 17842820 (-)
G29223 NA non-coding downstream 734892 17700761 ~ 17714365 (-)
G29213 NA non-coding downstream 811240 17637327 ~ 17638017 (-)
G29196 NA non-coding downstream 937802 17487361 ~ 17511455 (-)
G29176 NA non-coding downstream 981100 17454285 ~ 17468157 (-)
G29541 NA non-coding upstream 149786 18614357 ~ 18614724 (-)
G29542 NA non-coding upstream 150298 18614869 ~ 18615874 (-)
G29551 NA non-coding upstream 169507 18634078 ~ 18634357 (-)
G29612 NA non-coding upstream 419413 18883984 ~ 18887011 (-)
G29614 farp2 non-coding upstream 426146 18890717 ~ 18895805 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other downstream 253629 18148228 ~ 18195628 (-)
G29279 NA other downstream 376348 18070987 ~ 18072909 (-)
G29263 NA other downstream 499539 17949157 ~ 17949718 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other downstream 919942 17472330 ~ 17529315 (-)
G29158 NA other downstream 1169084 17272955 ~ 17280173 (-)
LOC113537624 NA other upstream 329454 18794025 ~ 18816812 (-)
trnag-ucc NA other upstream 351688 18816259 ~ 18816330 (-)
trnap-ugg NA other upstream 352556 18817127 ~ 18817198 (-)
glmnb LOC108272089 other upstream 1538788 20003359 ~ 20014094 (-)
pex5la pex5l,pex5la,LOC107709207 other upstream 1895151 20359722 ~ 20429325 (-)

Expression


Co-expression Network