tprg1 (LOC108272012)


Basic Information

Item Value
gene id tprg1
gene name LOC108272012
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 19855130 ~ 19883588 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921089.2
tgtttttctttatttggcCACGCCCACTGCTTTAACATCCCGGAAGAAGGAAAAGGTTGTCCCGTGCAGCTTCTAGTGTATAAACATATCCGGTGTAATAGCGATATAACTTCTCGCGCCAGTGGCCGTTTTTTTCGGATCATCGGACACTCCCTGgataaataaacagcacaatGTCAGAAAGAGACGAGGAGTCATTTAAATCTGTGCAACTTGATCAGCATGCAGCCGATTCCTCTAATGCAGACCCCGAGGTCCTTCAGTCCAACCCCAGTGCCCCGTCCACAACTGTCACTCAGAGCACTGGGACTGAGGAGAAGACATCCCCACCAGCATCCAGCACcatccccacccccacccccacccccacccccacccccaccaccacAAATGCAGAACAGGGACAGAAGTGGGCCTCAGCCGTGAACCAGTTCAAGCTCAGGAGATTCTTTGTCCTTCGGCCTGGGACTCTGGACAGCGCAATTGAGGACATCAAATCACTGGTAGACCAGACGGTGGATGGTGCTGTCCAGAGTGTTTGGCTACTGGTTGAGATCGATCACTGGAACAACGAAAAAGAGCGAGTGGCGTTGATCACAGAGAAGTCCCTCCTCATCTGCAAGTACGATTTCATCATGCTAAACTGCGAGCAGATCCAGAGAATTCCTCTTAATCTTGTTGACCGGATCACCCAGGGTCCCTTTACCTTCCCCCCTCGCTCCCTCCTCACGCGAGAAGGAGAGGGAGTGCGCGTGTTTTGGGACAAGCTCCGAGAGCCCTCATTAGCATCACGTTGGAACCCTTTCTCCACTGATTTCCCCTACACTACACTGACCTACCACCCAGTTCGAAATGTTAATGAGAAGCTGTCCACACTTTGTGAGCTTCACAGTTTTAAGGAGCAGTTGACTGCTGCAGCACAGAAAGCCCACAGTCTGAATCCCGTCCCAGGGAAAGCCAATGGTGTTCTTCTTCTGAACCAGCCCATCCTCATCGAGGCCTACGTAGGCCTCATGTCAACCCTTGGCAACCAGAACAAGCTGGGCTACTGCCTAGCAAGAGGCAATGTTGGTTTCTGAATGGAAATTCTGCTTTGATCAGTTAACAGCTTTATTGGAGTGAAAGACACTTAATAGTTGTATGTTTTGATATAgttcttaaatgttttttaataatgttaattctGTTTGTCTACATAAACATATTGTCCATTTTTCAAGCTAAGCATCTCCAAAGATGTCGACAAATCAAAGCAATGTGATCACTGGCACATTTAAATTGTGGTTAAATGATCCACTTTGCGGTAAACTAAGGCCATGTAGGGTTCTCTGTTAAAATGTTTGccaatatatttttgtcagaaTGTTTGTTTTAATCGTAAAATTTTAAGTttgatgtttatacattatcatttccatGAAAATGagtcaaggggaaaaaaagaatgttacCTTCACTCCTACTCCTGTAAGAACTAGAGATTAGCCACTAATAAATGATACAATATCATGATATTCAAACTGCAGAATATTGTTCTTCTAGATGATTCGAATGCTTCAAAGGAGGCTGCTTACATAGTTGGCATTATGGGAGGCAGCGTTTGTGTGCTCGAGATTTGGAAAGCAGTCTGAGGAcagctgtcctttttttttcatactattGTCAAGGAGGTTTCCTGAAGAATGCAAATATTACATGATAGATTACATGATCACAGTTTAATGAAAGTTTGAATAATATAATGGACAGAATTAAGGAATAAATGAAGAATAAATTTTTAGATACAAAAAACAGATGAcactgtgagagtgtgtgtgttttaccatCCATGGCATATATCAAGTGAATCCCCCATGATTGTACAATGAGGAGTGTCTCATACAGCAGGTCATTTACCACCCTCCTTAgagtctctttctcttttcatttacTCTGTAACAATTCTGTCATCAGTCCTACCATTTGCCGCCCCTTCAGTAATGCAATGCTCCTTACAGGCTCCCTGAAGCATGAAGGTGTATGTCATATTAGCGTGATGGTAGGAGTCTTGTTTTTAACAGTCAAGCCATGTGCTGGAATTTTCCCGGTTTTGTAATTGCAGTTCTGCTTGTTTATTTCTTCAGCAAAGTGAACAGATTAAACACAAATCTCTGAGTACAGCTGATGCAGAAACTGATTCTACATTCCATTGCCTTTTGGGAATCACTCAGAAGTCCTAAAATGCATCCCATGATGCTATCACTGCCTGTGTGCAGCCTATCCTTTTGTTCAGTCCATTCATTCCACATTATTAATACAGTGAAATACATCCATTGTGTGTTCTCAATCTCAATTGTATGTATGTAGTGATCCATTTTTATAAAACCTTTTCAATACACTATACAAGCTCTGGGTAATAAAGTGCATTCTTTCCAGCT

Function

NR:

description
tumor protein p63-regulated gene 1-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921089.2 True 2417 mRNA 0.43 6 19855130 19883588

Neighbor

gene id symbol gene type direction distance location
lpp lpp,LOC108271779,LOC108427685,LOC107717931,LOC107590653,LOC107684332,LOC107696776,LOC107752632 coding upstream 51282 19588827 ~ 19803848 (+)
inpp5d inpp5d coding upstream 322325 19509832 ~ 19532805 (+)
gpr17 gpr17,LOC107717943,LOC107752663,LOC107694121,LOC107590682 coding upstream 348273 19501596 ~ 19506857 (+)
LOC113527823 LOC108271983,LOC108427680,LOC108271985 coding upstream 354523 19477978 ~ 19500607 (+)
LOC117595738 LOC108271985,LOC108271983,LOC108427680 coding upstream 380397 19465393 ~ 19474733 (+)
tp63 tp63,LOC107574491,LOC103365775 coding downstream 1173 19884761 ~ 19956034 (+)
rpl5b LOC103397662,LOC103368809,LOC104921761,LOC101078338,LOC107590646 coding downstream 220616 20104204 ~ 20112519 (+)
LOC113537321 NA coding downstream 226542 20110130 ~ 20110225 (+)
atp1b1a atp1b1 coding downstream 315937 20199525 ~ 20207753 (+)
zgc:172121 LOC108271828 coding downstream 361986 20245574 ~ 20249458 (+)
G30049 NA non-coding upstream 34759 19820142 ~ 19820371 (+)
LOC117596099 NA non-coding upstream 273087 19553052 ~ 19582043 (+)
G29999 NA non-coding upstream 289107 19565810 ~ 19566023 (+)
G29985 NA non-coding upstream 313882 19540939 ~ 19541248 (+)
G29984 NA non-coding upstream 314220 19540629 ~ 19540910 (+)
G30224 NA non-coding downstream 34557 19918145 ~ 19918368 (+)
G30288 evi5 non-coding downstream 154147 20037735 ~ 20039974 (+)
G30382 nme7,LOC107732015 non-coding downstream 350387 20233975 ~ 20234772 (+)
G30436 NA non-coding downstream 450155 20333743 ~ 20334121 (+)
G30442 NA non-coding downstream 477002 20360590 ~ 20361838 (+)
smx5 lsm2,LSM2,smx5 other upstream 317933 19534345 ~ 19537197 (+)
LOC113533886 espnl other upstream 767919 19061097 ~ 19087211 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other upstream 906393 18932683 ~ 18948737 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other upstream 1019409 18774770 ~ 18835721 (+)
LOC113543059 c11h1orf146 other downstream 116458 20000046 ~ 20020226 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other downstream 653385 20536973 ~ 20658080 (+)
insl5a insl5 other downstream 1131250 21014838 ~ 21017867 (+)
tmem69 tmem69 other downstream 2714007 22597595 ~ 22603436 (+)
uhmk1 uhmk1,LOC107692420 other downstream 3750018 23633606 ~ 23653555 (+)

Expression


Co-expression Network