rpl5b (LOC103397662,LOC103368809,LOC104921761,LOC101078338,LOC107590646)


Basic Information

Item Value
gene id rpl5b
gene name LOC103397662,LOC103368809,LOC104921761,LOC101078338,LOC107590646
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20104204 ~ 20112519 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921295.2
TCCTTCTCATACCCTGCGCGTATGGTAtttactgcgcatgcgcacatgCTTCTTCCTTTTTCCAGTGCAGCGGAGTCAATCCCGAGCGGTGTTTGACTCCTGGCTCCGGCTTCGGAGACTGAAAAGTCTGCAAAATGGGATTTGTTAAAGTAGTGAAGAACAAGGCCTATTTCAAGAGGTACCAGGTGAAGttcaggaggaggagagAGGGAAAAACTGACTACTTTGCCCGCAAACGCCTGGTCATCCAAGACAAGAACAAATACAACACACCCAAGTACAGGATGATCGTCCGCTTCTCCAACAGGGACATCGTCTGTCAGatcgCCTATGCCAAGATCGAGGGAGATATGATTGTGTGTGCAGCATACTCTCATGAGCTCCCCAAGTATGGCGTCACTGTGGGGCTGACGAACTACGCAGCAGCCTACTGCACTGGACTGCTCCTCGCCCGCAGGcTGCTGAACAAATTTGGCTTGGATAAGGTGTACGAGGGCCAGGTGGAGATCACCGGAGATGAATTCAACGTGGAGAGCATTGATGGACAGCCCAGCGCCTTCACCTGCTACCTGGATGCCGGCCTTGCCAGAACCACCACTGGAAACAAAGTGTTCGGAGCCCTGAAGGGAGCTGTAGACGGAGGACTTTCCATCCCTCACAGCACCAAGCGTTTCCCTGGCTATGATACTGAAAGCAAAGAGTTCAACGCAGAGGTCCACCGCAAACACATTCTGGGACTGAATGTGTCTGAATACATGAGGCTCCTgatggaggaggatgaggacgcTTACAAGAAACAGTTCGCTCGCTTCATCAAGAACGGTGTCACCTCCGAGAGTATGGAGGAAATGTACAGGAAAGCCCATGCAGCCATCCGTGAAAACCCAGTGCATGAAAAGAAGCCCAAGAGGGAGGTCAAGAAGAAGAGATGGAACCGTGCCAAGCTCACACTGGCCCAGAGGAAAGACCGCGTTGCTCAGAAGAAAGCCAGCTTCCTCCGCGCTCAGGCTGCAGAGGAGGATTAAAACAGCCTCACTATATGATTTTGCAGAATTTTGTTCTAATAAATCTATTGGAAAAGA

Function

NR:

description
PREDICTED: 60S ribosomal protein L5, partial

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function
GO:0008097 5S rRNA binding molecular_function

KEGG:

id description
K02932 RP-L5e, RPL5; large subunit ribosomal protein L5e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921295.2 True 1082 mRNA 0.51 8 20104204 20112519

Neighbor

gene id symbol gene type direction distance location
tp63 tp63,LOC107574491,LOC103365775 coding upstream 148170 19884761 ~ 19956034 (+)
tprg1 LOC108272012 coding upstream 220616 19855130 ~ 19883588 (+)
lpp lpp,LOC108271779,LOC108427685,LOC107717931,LOC107590653,LOC107684332,LOC107696776,LOC107752632 coding upstream 300356 19588827 ~ 19803848 (+)
inpp5d inpp5d coding upstream 571399 19509832 ~ 19532805 (+)
gpr17 gpr17,LOC107717943,LOC107752663,LOC107694121,LOC107590682 coding upstream 597347 19501596 ~ 19506857 (+)
atp1b1a atp1b1 coding downstream 87006 20199525 ~ 20207753 (+)
zgc:172121 LOC108271828 coding downstream 133055 20245574 ~ 20249458 (+)
si:ch211-201h21.5 LOC108271508,LOC108427703 coding downstream 146302 20258821 ~ 20265493 (+)
actl6a actl6a coding downstream 202506 20315025 ~ 20324579 (+)
ndufb5 ndufb5,LOC107709185,LOC107659010,LOC107692354 coding downstream 216924 20329443 ~ 20333691 (+)
G30288 evi5 non-coding upstream 64230 20037735 ~ 20039974 (+)
G30224 NA non-coding upstream 185836 19918145 ~ 19918368 (+)
G30049 NA non-coding upstream 283833 19820142 ~ 19820371 (+)
LOC117596099 NA non-coding upstream 522161 19553052 ~ 19582043 (+)
G29999 NA non-coding upstream 538181 19565810 ~ 19566023 (+)
G30382 nme7,LOC107732015 non-coding downstream 121456 20233975 ~ 20234772 (+)
G30436 NA non-coding downstream 221224 20333743 ~ 20334121 (+)
G30442 NA non-coding downstream 248071 20360590 ~ 20361838 (+)
G30445 pex5l non-coding downstream 255294 20367813 ~ 20368152 (+)
G30448 NA non-coding downstream 260187 20372706 ~ 20373062 (+)
LOC113543059 c11h1orf146 other upstream 83978 20000046 ~ 20020226 (+)
smx5 lsm2,LSM2,smx5 other upstream 567007 19534345 ~ 19537197 (+)
LOC113533886 espnl other upstream 1016993 19061097 ~ 19087211 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other upstream 1155467 18932683 ~ 18948737 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other upstream 1268483 18774770 ~ 18835721 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other downstream 424454 20536973 ~ 20658080 (+)
insl5a insl5 other downstream 902319 21014838 ~ 21017867 (+)
tmem69 tmem69 other downstream 2485076 22597595 ~ 22603436 (+)
uhmk1 uhmk1,LOC107692420 other downstream 3521087 23633606 ~ 23653555 (+)
G32684 NA other downstream 3907859 24020378 ~ 24021036 (+)

Expression


Co-expression Network