lrrc40 (lrrc40,LOC107709203,LOC107590628)


Basic Information

Item Value
gene id lrrc40
gene name lrrc40,LOC107709203,LOC107590628
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20674401 ~ 20683491 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921723.2
AACagaagagttagtgtgtagtttCTGGCTTCACAGACGCTGACTTCATGCAGTGTGTTGAATTACAGGGGTGTACGTTTTTATGTTGCTGTAAATGAGCGAGTGTGTGCGAGTTTCATGTCTCGGTTTAAGAGAGGAGCAGTAGCTGACCCTCGGGCTGGGTTCAGACAGGACACACCACAATGTCCGGTACCGTCGGGACTGCTGAAGAGCGCCAGGAAAAGCGGACAGCTCAACCTGTCCGGCCGCGGGCTCAGcgaagTTCCTCAGAGTGTGTGGAGGATAAACGTGGACCCTCCAGAAGAAGCTCAGCAGAATGTGTCCTTCAGTGCAGCAGAGCGATGGTGGGAGCAGACTGATCTCACCAAACTCCTGCTCTCCTCCAACAAACTCCAGACAATCTCCGAAGACATCAAACTCTTGCCTGCACTAGTGGTTTTAGATATTCATGACAACCAACTCACTACACTGCCAGCGTCTATTGGAGAGCTGGAACAGTTACAGAAACTCATCCTGAGTCATAATAAGTTGACAGAGCTGCCCACGGAGCTTTGGAGCCTGACAAACCTGCGATGTCTCCATCTGCAGCAGAACCTGCTCGAACAGCTGCCTGCAGACTTGGGCCAGTTGTGCCACTTGGAGGATCTTGACATTTCCAACAACAAATTAATGGCTGTACCAGACAGCCTGGCAGACCTCAGCAACCTCGTAAAACTGAATCTGTCCTTCAACAATCTGAAGAGCCTGCCGTCTGCAATCAGCGGAATGAAGAACTTGAGAATGCTGGACTGCTCTCGAAATCAGTTGGAGAGCGTGCCGCCTGTCCTGGCACAGATGGCGTCTCTCGAGCAGCTGTACTTGAGGCACAACAAACTGCGCTTTCTCCCAGAGCTGCCCTCCTGCAAAACACTCAAGGAGCTTCACTGCGGGAATAATCAGATTGAGGTATTGGAGGCAGATCATCTAAAACACCTGAGTGCTCTGAGTGTTTTGGAGCTGAGAGATAACAAGGTGAAGAGTCTTCCTGAGGAAATAACTGTACTGCAAGGCCTGGAGCGCCTGGATCTTACTAACAATGACATTAGCAGTGTGCCCTGTGGTCTTGGAACTTTGCCTAATCTGAAGTCTCTGGCTCTGGAGGGCAATCCTCTGAGGACGATCCGCAGAGATATTCTGACTaaAGGCACCAGTGAACTCCTGAAATATCTTAGAAGTCGAATACAAGAGCAGCCTGATGGAAAAGCCAAAGAGGGGCCGAACACAGCGATGACTCTCCCTAGCCAGGCCAAGATTAATGTGCATGCCATCAAAACACTGAAGACATTAGACTACAGTGAAAAACAAGAGGCATCTATACCTGATGATGTGTTTGATGCAGTCAATAACAGTCCTGTTGCCAACGTGAACTTCAGCAAAAACCAGCTGACTGCTGTACCACCAAGGATTGTGGAGCTGAGAGACACTCTAGCAGATATCAATCTCGGATGTAATAAGATTTCTACGATTCCTCTTGAATTTTCCAAGCTACAGCAGCTTGTACACATAGACCTCAGAAATAATCTGTTGACATCACTGCCAGTGGAGCTGGAAGCTCTCACCAAGCTGCGGAGCATCATACTGTCATTTAATAAATTTAAGTGTTTCCCAGATGTGCTGTACCGCATCTTAACCCTGGAGACAATTTTAATAAGCAACAATCAAGTTGGAGCCATCGATCCTGTGCAGCTTAAGCTGCTCGACAGGTTGTCCACTCTGGATCTGCAGAACAATGACATCATGCAGGTGCCACCAGAATTGGGTAACTGTACCAGCCTGAGGGCTCTGTTGCTTGATGGGAACCCTTTCCGTAACCCTAGAGCTGCGATTGTAGCTAAAGGAACGGACGCGCTTCTCGAGTATCTACGAAGTCGCATTCCTACATGAATTTATCGTCTTACAGGGTTGAGCTACCACCACTGCCACATAATTAAAGCACTATCTAATTCTGCAGACAAGACACAACACTTCTCTGCCATAAAAGTGGgtttttctgaatatttttcatgaaatgttcTTAGAGTAACTGTCAGCTTTTGTTCTCCTAAAGCCTCATGGCCTTAATGGGAAAGTTCCCAGAAATCACATGATATTTGTTTGAAATTCTGCAGTGATCTAGTGCACATGCTcattcttctgtctctctttatcatCTCTCTTATCATCACCTTATGCTTGCTGACCAAATTTACACTAAACTGCGCTGcacttgcatttattttattcttcgCCTGCATGTCTAAGACTAGCATGAAGACCATGTGACATGATTAAACAGGCTGTGTGTTTGCTACATTACATTTCAACTTCCAGTTCCATTTAAGAccttttagagttttttttggCCAAGaatatgtataatattaaaatacttttGATGGGAAAGCCAGGTATTCATTGTGCAATTGATTATTGTATCCAGAAAATCAAAATTCTTATTAAATTGATAATTTGCAGTA

Function

symbol description
lrrc40 Predicted to enable protein serine/threonine phosphatase activity. Predicted to be involved in signal transduction. Predicted to be active in cytoplasm and intracellular membrane-bounded organelle. Orthologous to human LRRC40 (leucine rich repeat containing 40).

NR:

description
leucine-rich repeat-containing protein 40

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921723.2 True 2495 mRNA 0.46 15 20674401 20683491

Neighbor

gene id symbol gene type direction distance location
meltf meltf coding upstream 2655 20658819 ~ 20671746 (+)
ptmaa NA coding upstream 157846 20512789 ~ 20516555 (+)
phb2b LOC108427714,LOC107692360,LOC102296991,LOC102211951 coding upstream 194327 20473271 ~ 20480074 (+)
pde6d pde6d coding upstream 202336 20467149 ~ 20472065 (+)
usp13 usp13,LOC107659032 coding upstream 314750 20335631 ~ 20359651 (+)
shroom2a shroom2 coding downstream 140849 20824340 ~ 20871696 (+)
cldn34a cldn34 coding downstream 193454 20876945 ~ 20880467 (+)
wwc3 wwc3 coding downstream 210532 20894023 ~ 20948637 (+)
ttc22 ttc22 coding downstream 299041 20982532 ~ 20988867 (+)
wdr78 wdr78 coding downstream 315992 20999483 ~ 21011730 (+)
G30545 NA non-coding upstream 167755 20506323 ~ 20506646 (+)
G30543 NA non-coding upstream 168764 20505039 ~ 20505637 (+)
G30536 NA non-coding upstream 187191 20484465 ~ 20487210 (+)
LOC113534552 NA non-coding upstream 190023 20480974 ~ 20484378 (+)
G30489 NA non-coding upstream 245152 20428913 ~ 20429249 (+)
LOC117599214 NA non-coding downstream 87064 20770555 ~ 20781908 (+)
G30715 NA non-coding downstream 151996 20835487 ~ 20889710 (+)
G30721 NA non-coding downstream 165000 20848491 ~ 20851676 (+)
G30747 NA non-coding downstream 279941 20963432 ~ 20963641 (+)
G30791 NA non-coding downstream 410123 21093614 ~ 21093816 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other upstream 16321 20536973 ~ 20658080 (+)
LOC113543059 c11h1orf146 other upstream 654175 20000046 ~ 20020226 (+)
smx5 lsm2,LSM2,smx5 other upstream 1137204 19534345 ~ 19537197 (+)
LOC113533886 espnl other upstream 1587190 19061097 ~ 19087211 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other upstream 1725664 18932683 ~ 18948737 (+)
insl5a insl5 other downstream 331347 21014838 ~ 21017867 (+)
tmem69 tmem69 other downstream 1914104 22597595 ~ 22603436 (+)
uhmk1 uhmk1,LOC107692420 other downstream 2950115 23633606 ~ 23653555 (+)
G32684 NA other downstream 3336887 24020378 ~ 24021036 (+)
LOC117598985 NA other downstream 3969499 24652990 ~ 24656248 (+)

Expression


Co-expression Network