zbtb11 (zbtb11,LOC106576566)


Basic Information

Item Value
gene id zbtb11
gene name zbtb11,LOC106576566
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20146385 ~ 20156159 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921732.2
CGCAACATCCGGTTGTGCAGCAGCCATTTTGTCTGGTCGTGCAAGTCCGCCCCAACACGGTCACGAACAGCAGTTCCCacttgtaaaatattaaaaaacatcGCTCTCTAAATTTCACTTGGGCATAGAAACAGGTTAAGGAAACTCTCTTGTGAATTTTAGGAGGAGAAGCGCTCGCTGGTTTTGGGCTTTATGAAGGTTTATTTATGTCGTGTGTGAGTGCCGCCAGTCGTGTGTTATGTCGAGCGAGGAGAGCTACTTAGCCATCCAGCGCTATTTAACGGACGAGCGCGAGCCCTACGCACCCGGAACTCACGGCAACGTCAAGAGGAAAATCCGCAAAGCAGCCGCTTGCTACGTCGTGCGGGACGGAGTGCTGTTCTACCAGCGGCGGCACCGGGGCCAGGAAGGCTTCACCGAGCTGGAAGTGGTGCTTCAGGCCGAGCGGCGGAAGGAACTAATCGACGAGGCGCACATCTCCAGAGGGGAGCATCTCAATCAGCAGCTCACCTGGGAGAGCCTTTCTCAAAAATACTGGTGGAGAGGAATCCTAAAGCAGGTAAAGGATTACATCAGGGACTGTGGGTGCCAGCAGAAGTCGGAGCGTGGGAAAGGCAGTGCTGAGGATGGATCAGCTTCCCGTGGTCCAGGTAGACGAAAGGAGGacgatgaagaagaagaagaggaagatgatCTTGAGGAACTGCATGCCGCCTTTCAGACGAAGCCAAAGGGCTCCAGTGTTGACAAACATGAACTGGTTTTTGTGGACAGTAAGGGTGTTGTAAAGCAGTTCCTGCCCAAACATGGCCAGACCATGTTGGATAAGCTGAATCAGCAGCGGTTAAATAACCAGTTCTGTGACATTACCTTGCTCATTGAGGCTGAAGAGTATCGGGCACACAAAGCCGTCTTGGCTTCTTGTAGTGATTACTTCTATGAGCTCTTTGTTGAGAAGGGTGCTGTGGCCAGCCATGAAGCCGTTGTGGACCTCTCAGGCTTTAGCAAGGCAAGCTTCCTGCCTTTGTTGGAGTTTGCCTACACCTCAGAGCTGACATTTAACTTCTGCGTTATGGCAGAGGTGGCCATGCTTGCACGGCACCTGCACATGCCTGAAGTGCTTCAGATTTGCGAGTCAGTGCACAAAAAAGTGGAGGAGCAGAAGCTAATGGTCTATCAGCAAGGAGACGTGCACACAGTGATAGCCAGGGAAACTCTGCCTGCTCAGCCAGTGGCTCCTTCTGACTCTGGAGCTTACATGGTGGCCATGGAGAGTGATGGCCAGGCAGTGGTGGCTCGCTCTGCACAGACTGAAGCTGAACACTCCATCACCGTTATCACGGGTGAAGAAGGAACAGCCGAATCTCTGGCTTTGCTTGCTGGGGCGACAGTGGATGGAGAGACTATGACTGTGGTCACACACAGTGGCCAAGCTGGCTTGCCCGAATCTCTCTCTATTGTGGCCCATACTGGCCAGTCAGAAGCAGGTGAAACCATGACTGTGGTCACTCACTCTGGGCAAGCGGGCTCAAGTGAATCCCTGGCTGTGGTTCAGGCGTGCTGGACAGTGGATGAACCTCAGGTAGTGGAAACACCGGTAGCAGGGAGCATGGAGCCTGGTGCCTACATTATTAGCGTAGAACCAGGCAAGATGGCTCCTACCGAGAAGGTTCATCTAACTGCATCAGCACCGGCTCTTCGGGAGGAGCCACTGGTCCAGGCTTTAGAGCCTCTACCCCAGAATGTAGTGAGTGCACAACAACCGCCAGCCTCTGCACCTCAGAAAAGGAGGCCAGGGAGACCCCCAAAGGTGAAGCAGCCCCCACCAGAACAGGAACCAGTAGTGACCGAGGTTGCAGAGAGTGTTGCAACGGGAGGAGAGGACGAGAAGAAAGAGGAACAAGAGAGTGTTGACCCTAATAAGAGGTTCCTGAGGAAGAGGTCAATGAGGGAAGGAGGATACGTTCGTCTGCATATGGGACTTGAGACAGAGGAGGAGATGTCAAATACTGTGAAGacACCTCAGAGACTGGTGAAGCGAGGCCGTGTGTCCCAGTCACTAAAGAGATCATCACCTGACTCTTCTGAAACCGAGCCTCAGTCTGCCTCTGATGGTACAAAGTCACTGCCTGAGGGAGCAGAGGCAGCTGGAGCCGAGGTGATGCCTGTAGAAGAAGGGGCCGCACgagaaaaaacagagggagCAGTGGATGGAGAACACACGTGCAGCGAGTGCGGCATGGTGTTTCAGAGACGCTATACTCTCATCATGCACATGCTGAAACATGAGAAGTCACGCAGTTTCAAGTGCACTCTGTGTAATAAAGAGTTTCAGTATGCTGTCTCCCTCCGTGCCCACTTGGCTCGTCATAAGCATCAGAAGTCCCAGAGATCATCTTTGGCCCGAGGAGCAGCTGATGAGGTTTCGGATGGGTTGGAGGGTCAGGCCAAAAGTCGCACCAAGCGCGAGTTTGTGTGTGACATTTGTGGTAAGACACTGCCCAAGCTGTACTCTTTGCGGATCCACATGCTGAACCATACAGGTGTGCGGCCACACTCGTGCAGGGTCTGTGGGAAGAGCTTCGCCACCAAGCACAACCTGAAGATGCACCGAGCTCTGCATGACGCAGCCAAGCGCTTCTACTGCACCATGTGTGACAAGTCCTTCGTCAGCAAGAGGAGCCTGAATGAGCACATCAGCGTTCATACAGgtgaatcaaaatatttttgccaGACATGCGGCGCGTCATTTCACCGGGCATCGGGCCTGAGCAAACACATGAAAAAACATCAACCCAAACCAGAGACCCGTTCTTTCCACTGTTCCCACTGTGATAAAAGCTTCTACGAGGCGAAGGACCTGCAGCAGCACATGAATAAGCACTTGGGCGTGAAACCCTTCCAGTGCCAGGTGTGTGGGAAAAGCTACAGCTGGAAGAAGGACTGGTATTCTCACGTTAAATCGCATACCGTTGCAGAACCTTACAGGTGTAACGTGTGTGGGAAGGAGTTCTTTGAGAAGGCTCTGTTCAGGAGGCATGTGAAGAAGGCCACCCATGGAAAGAAGGGCAGAGTGAAGCAGAACCTGGAAAGGGAGTGTGAACACTGCGGCAGGAAGTTCACTCAGCTCCGAGAGTACCGCCGCCACATGAACAACCATCAAGGTGTAAAACCGTTTGAGTGTCTGACCTGCGGTGTGGCATGGGCTGATGCCCGCTCATTAAAGCGccatgtgcgcacacacacaggtgagcgcCCCTATGTGTGTCCACTGTGCCAGGAGGCCCACATTGACGCCCGCACATTGAGAAAGCACATCTCCAAATACCATGGCGATCAGTTGCCAGGTAAGATCATGTTAGAGAAGGACACGCTACAGTTTCATAATCAAGGCACCCAGGTGGAGCACGCTGTCAGCATCCTGAGCCCCGAGCTGCCCCCTGAGCTGTGCCCAGCGGAGGCACCCTCTACCACCGAGGAGATTGAAACTGTGCTCATCACAGAAGAGACGGTGGAGGCCATGCAGGCCATGAATGAGGGCAGTGTCACCACGCTGTCGGACCAGAGCATCATGCAAGTGGTGAACTACGTCCTGGCACAGCAGGCTGGCGCAAAAGCGGAGGAAGAAGAGGCCTCAGATATCATCCAGACTATGGAGGTGGAGGTGGCTCATGTAGCCGAGGTGGAgtgacagaaagacacacacaggcttaaaagcaaagaaatgagaGTGGAGTTGTGTCTAAATTGTGACTCAAATAAACAGTGTACCTGGCACAGATAGTGTCAGTATagttacacatttatttttgttgtacaATATAACTTGAGGAACTTTGAAGTTCTTCCTCAGTtggagtgcatgtgtgtgatgctTTACCcagcagtgtgtatgtgagagcaTGTCCAAGTGAtttgtatactgtacatatgtagAAAAAATGCAGTCTGGAAGAAATGctaataatttacaataaagtGCGTTACATAGGTTA

Function

symbol description
zbtb11 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within neutrophil differentiation. Predicted to be active in nucleus. Is expressed in head; intermediate cell mass of mesoderm; and nervous system. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human ZBTB11 (zinc finger and BTB domain containing 11).

NR:

description
zinc finger and BTB domain-containing protein 11

GO: NA

KEGG:

id description
K10498 ZBTB11; zinc finger and BTB domain-containing protein 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921732.2 True 3995 mRNA 0.52 10 20146385 20156159

Neighbor

gene id symbol gene type direction distance location
dipk1ab fam69a,LOC108272054,LOC108427695,LOC103026455,LOC107590645,LOC107659006,LOC107566484 coding downstream 4128 20112945 ~ 20142257 (-)
evi5b evi5,LOC108427692 coding downstream 45187 20038950 ~ 20101198 (-)
gfi1ab LOC108271917 coding downstream 113604 20025854 ~ 20032781 (-)
tomm70a tomm70 coding downstream 147225 19986024 ~ 19999160 (-)
tbc1d23 tbc1d23,LOC107574489 coding downstream 163088 19956717 ~ 19983297 (-)
dpt dpt coding upstream 15969 20172128 ~ 20183294 (-)
nme7 nme7,LOC107659027,LOC107731836,LOC107732015,LOC107692347,LOC107590639 coding upstream 51596 20207755 ~ 20246008 (-)
LOC113534100 bivm,LOC107548643,LOC104949108 coding upstream 93956 20250115 ~ 20258553 (-)
tmem131 tmem131,LOC107659030 coding upstream 109154 20265313 ~ 20310226 (-)
mrpl47 mrpl47 coding upstream 168699 20324858 ~ 20328459 (-)
G30320 NA non-coding downstream 33867 20104252 ~ 20112518 (-)
G30270 NA non-coding downstream 160466 19984675 ~ 19985919 (-)
G30255 NA non-coding downstream 222406 19923763 ~ 19923979 (-)
G30246 NA non-coding downstream 232434 19913653 ~ 19913951 (-)
G30236 NA non-coding downstream 259647 19885468 ~ 19886738 (-)
LOC117599142 NA non-coding upstream 41061 20197220 ~ 20199516 (-)
G30412 NA non-coding upstream 43374 20199533 ~ 20207732 (-)
G30421 NA non-coding upstream 90446 20246605 ~ 20246871 (-)
G30422 NA non-coding upstream 90952 20247111 ~ 20247337 (-)
G30423 NA non-coding upstream 92007 20248166 ~ 20248509 (-)
glmnb LOC108272089 other downstream 132291 20003359 ~ 20014094 (-)
trnap-ugg NA other downstream 1329187 18817127 ~ 18817198 (-)
LOC113537624 NA other downstream 1329573 18794025 ~ 18816812 (-)
trnag-ucc NA other downstream 1330055 18816259 ~ 18816330 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other downstream 1950757 18148228 ~ 18195628 (-)
pex5la pex5l,pex5la,LOC107709207 other upstream 203563 20359722 ~ 20429325 (-)
lepr lepr other upstream 1125205 21281364 ~ 21317823 (-)
raver2 raver2 other upstream 1293387 21449546 ~ 21531428 (-)
ccdc17 ccdc17 other upstream 2416273 22572432 ~ 22581943 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other upstream 2426144 22582303 ~ 22593861 (-)

Expression


Co-expression Network