LOC113531458 (LOC108271995)


Basic Information

Item Value
gene id LOC113531458
gene name LOC108271995
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 14117983 ~ 14129183 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922220.2
GAGGGAAGGACAAGTAGacattaaactgatttaaaagaGAGGAGGGGCAGAGGCTCTTAACAGATTGAGCAGAAAAAacgagaaagaagaaagagccATATCAGGCTGGAATTAGCATGTCTCTCCCCTACTCACTcttcagacagagagagagagagagagagagagagagagagaagctgagaGTCGTTCGCCTCTGGAGGACCAAACCACCCAGCATTCTCATACCTGCGTCACTTTAGGGCTCACGACTATCCCACAGATCAGACAGCACTGAACAGCACTGATCAGAGGATACTTTGAATACACTGTGCTTGAGGAGGAGCCTGATTTAAAATCTGCAGGATTGTGAGCTGCCTGCACCTGGTGTCTGTGTTTGAGAGATGATGAGGGGGGACCTGCTGCTACAGAATGTGACCGCCGAGCCACGGAGAACACACTCATCAGAGAAGAAGCTGGCTGCTTTCTGGGTATCTCTCTCCCAGCGCACCAGAATGCTCTTTAGACTCAGACAACGCAGTGGCTTCCACAGGAGTCCGTCTGTAGCAGGGCTGCTAAGGAgtgaagtgtaagtgtgtgtgagagagagatatacatTTTAAGTTTAGAcctgtatatttgtatgtatcGAGATGGCCCCTACAGAGCAAGACCAAATCTACCCTTCAAATACAATGACATGGAAACAAGAAGTGATGGAAAATGGCTGAGCACCaggacagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaagagtaaaggGCAGGAAATCAACAAGTGtatctcatctcatcttcaGCTTGtggattgctttcttttgaaaatatatttgttttggGATTCTTGTCTATCTTTGAAAATGTGCCACCAGTGAAAGACaatgtttctttctctcattatgACACCACAGTCCTCCATGTTTCATTCTTCTAGAATTTTATCTCATAAAGCTTGGAGTGAATTGAAGGACACAGTGCTATGCACTATATACTCTGTGTCAGCCTCGGGACGAGCTGCGTGTCTGAATTTATGATGGTTTTTGTGCacctggagctggagctgatATTTGTAGGACAGAAGCTGCGAGAGTTCACCTGTAAGCTGACACGTTCAGCCAGTGGCTACCTTCCAGAGAGTTCCTCACGTATCGCTGCTCATGTACTGCTGCCGTACCTTCTGGCAGGCCTCGGTCTGGTGGCTGCAGGAATGATCATGAATACAGTacaacacTGGGAAATGCTTAAAGAAATCTCTGAAGTGTTTATCTTGGTTCCTGCACTAGTGGGCTTAAAGGGAAATCTGGAGATGACTTTAGCATCCAGACTATCCACAGCAGCCAACACCGGTCAGCTAGAAAATCCCAGGCAGCGGACATTGATGGTGTACACCAATCTAGCTTTAGTCCAGgTACAAGCCACAGTGGTGGGTTTTCTGGCCTCACTGGCTGCAATAGGCTTGGGGGGCTTGATTAAGGGCCGTGTGGACCTTCATCAGGCTGCTGTACTGTCTGCTAGCAGTGTGACCACAGCCTTCATCTCTGCTCTCACTTTGGGGTTGCTGATGGTGGGGGTGATCATTGGATCTCGAAAGATGGGCATTAACCCTGATAATGTAGCCACCCCAATAGCTGCCAGCCTCGGTGACCTCATCACCCTCTCACTGCTGGCAGGAATCGGCAGCTTCTTCTTCCAGTTTAGAGAGATGTGGTATCTACTTCTACTGATATGCGCTGTGTTCCTCTTGCTCATCCCTCTCTGGGTAATGATCGCTCGCCGCAGTCCACCAATCAGAGAGGTGCTGAAGTCAGGCTGGCAACCTGTTATCATTGCTATGCTAATCAGCAGTGCAGGAGGACTGATTCTGGATAAGACTGTAAGTGACCCTCGGTTTGAAGGCATGGCAGTGTTCACACCCATCATTAATGGTGTAGGTGGGAACCTGGTGGGTATTCAGGCTAGCCGAATCTCCACCTACCTGCACTGCATCAGCGTTCCTGGAGTCACATCCCAACACATGAAAACACGCTGCCCTCATCCCTGCATGACTTTCTGCTCCTCAGcAGTGAACTCCAGATCTGCTAGAGTTCTTTTGCTGCTGGTGGTTCCAGGTCACCTGCTCTTCCTTTACACAGTCCAGCTGTTTCAGGGTGGACACACTGCCATGACAGCTGCTTTCGTCTGCTGCTACCTGTGTGCTGCACTACTGCAGGTACTAATACTGCTGTACGTGGCAGATGTGTTGGTGTGGCTGATCTGGCGACAAGGTCTGGACCCTGATAATTACTCCATCCCTTACCTGACTGCACTGGGGGATCTGCTGGGCACCAGCCTCCTGGCCCTCACTTTCAGAGTAACCTGAGATCAGATCAGTTCCCTGGTTCTATTCTGATTATAACATGGGAACATATGCAAGTTTAAAGAAACAGCGATAGGAAATATTTGTTgggataaaataaaagtaagaagCATTTATGCGTTTCAGTTCAATACATCATGACAGCTGTATTAGACCAATTAGATTTTCCTCTATCATACAGACCATTGTGATTCTTTATGTAGAATTCCATTTCCACatttcaataatataatttttttcattatattttcattgttgatTACCTTACTGGAAATTTCTTGTTGCTTCTCCTACATACACAAGTACTTAAGAGTTAATGGCATTTATTGGAAAACTATATAGGAATAGCGAACTATCTGTACATTTTTCCtaataaatgttattgtacatatttacataatattaatgtaataaatctgtactgaggaggtccgttaaattgattttacaattaaaaaagtCCCTGGTAGCAAAAAGCTTGAGAACCGCTGCTCTAATTAAAGCGGACTGTCTGTACTTTAACTTCAATGTccttgtttcattttaaatccagtgAGAGGAAGAATTGTCAGTGTCCTGTTATTTATGGACTGCATTGTATTATCATCATGTGCTGTGTTTCTTGGAGGCCATTTACTGCAAACGAATCACAAAAGTGACATAGTTCTTTCACCATAGCAATGAAGGCAATAAATGCATCATATGGTGTTAATAACATGTCTTACATATTAACTAATACTACCAGGCTACGTTGTGAGCAAAATAGATGCTTTTTCTGTGTTGTACCAGTTCTTATAAAGAAGATAGCACTATATTCTTGTGAGCATGTAGCCTGATCATTTCTGATTAAACAGTGCAACATTTTACATTATACAGatagaaaatgtttgtaatgaacGTCGCCTTTAGTATTAACCTTGTGATTTCAAAAACTGAGCTACTTCTGTGCACtatgatgtatttattaattatacaaattaCGTTGCCTGTCATAGACTATGCAAAAGAAATGATATTGTTGCATATTTTATACTTAAATGTATTTGTCCTATATGCTGCAATGTCTTCCACGGTCTCAAAAGGCATAGCCTTACAGTGTAG

Function

NR:

description
PREDICTED: solute carrier family 41 member 1-like

GO: NA

KEGG:

id description
K15122 SLC41A; solute carrier family 41

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922220.2 True 3455 mRNA 0.43 10 14117983 14129183

Neighbor

gene id symbol gene type direction distance location
aldh1l1 LOC108272091,LOC103022276,LOC108427619,LOC105901876,LOC101480024,LOC100704523,LOC102210696,LOC103359410,LOC102300968 coding upstream 4053 14100207 ~ 14113930 (+)
LOC113533298 LOC108272123 coding upstream 59469 14048735 ~ 14058514 (+)
si:dkey-156n14.3 zxdc coding upstream 87291 14022253 ~ 14030692 (+)
LOC113533199 cpne9,LOC106583634,LOC106565248,LOC102776939,LOC106947665,LOC100694516,LOC103466873,LOC106915448 coding upstream 99251 13931140 ~ 14018732 (+)
mtmr14 mtmr14,LOC106583633 coding upstream 187192 13912064 ~ 13930791 (+)
myl9b myl9,LOC103045271,LOC103386121,LOC106565219,LOC100697131 coding downstream 454144 14583327 ~ 14588319 (+)
quo LOC108271936,LOC107582340,LOC107690824 coding downstream 597974 14727157 ~ 14761927 (+)
tgm2b LOC108271939,LOC108427633 coding downstream 646660 14775843 ~ 14789067 (+)
thumpd3 thumpd3 coding downstream 910674 15039857 ~ 15050797 (+)
LOC113536922 LOC108271893,LOC108436255 coding downstream 923125 15052308 ~ 15063316 (+)
G26921 NA non-coding upstream 63293 14000931 ~ 14054690 (+)
G26884 NA non-coding upstream 244460 13873315 ~ 13873523 (+)
G26875 NA non-coding upstream 281636 13834239 ~ 13836347 (+)
G26873 NA non-coding upstream 292757 13822384 ~ 13825226 (+)
G26848 NA non-coding upstream 488517 13626481 ~ 13629466 (+)
G27164 NA non-coding downstream 40597 14169780 ~ 14172077 (+)
G27262 NA non-coding downstream 340907 14470090 ~ 14470420 (+)
G27269 NA non-coding downstream 361597 14490780 ~ 14491136 (+)
G27275 NA non-coding downstream 367029 14496212 ~ 14496858 (+)
G27309 NA non-coding downstream 426068 14555251 ~ 14555465 (+)
tshba tshb,LOC108271948 other upstream 611979 13490161 ~ 13506004 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other upstream 785806 13265788 ~ 13332177 (+)
si:ch211-286o17.1 NA other upstream 1366706 12728993 ~ 12751277 (+)
G25908 LOC108272198 other upstream 1590492 12526170 ~ 12527491 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other upstream 1904326 12204441 ~ 12213657 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other downstream 1149639 15278822 ~ 15304494 (+)
LOC113534559 LOC108272085 other downstream 1659443 15788626 ~ 15790444 (+)
slc2a11a LOC108271728,LOC108440316 other downstream 1954106 16083289 ~ 16103248 (+)
mustn1a LOC108272082,LOC108439813 other downstream 2051988 16181171 ~ 16182309 (+)
tomm6 tomm6 other downstream 2269062 16398245 ~ 16401111 (+)

Expression


Co-expression Network