pxmp4 (pxmp4,LOC103464829)


Basic Information

Item Value
gene id pxmp4
gene name pxmp4,LOC103464829
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 14872948 ~ 14875990 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922253.2
CCCTTGTTTCTGATCGACTGGCACGCGCTGTGCACGCGTGACTTTGTCACAGCATTAAGAAACCCTATTACTCAGATATGGCAGGGGCCGATGTTTTGAAAACCCTGCTCTATACAATCAACACCTTCCTCCAGCAGGAAAAATACAAAGCCGCTCTTGCTGTGCTTAAAGGATTCAGGAATGGCGCCGTGTATGGTGCCAAGATCCGGGCTCCACATGCACTGGTGATGACCTTTCTTTTTCGAAGTGGCAGCCTTCAATCCAAGCTGAAAGCTATAGCCCAagccacatatacacactcaagGAACCTAGCCTTCTTTGTATTTTCATATAAAGGACTGTTGGCACTTCAGAAGTACATTCAGGGAAAGAGTCTTCAGTCTCACTCGTTCTTGGCTGCTTGTCTTGGAGGTTGGCTGGTATTTGGGGACAATAACAATATCAACAGCCAGATAAATATGTACTTGCTATCTAGAATTCTGTTTGCCTTGTGTCGCCTGGCTGTGGAAAAGGGCTACATCCCCAAGCCCAAAAGAGACCCCTTCCCACTGTTTGCCACACTGGTGTGGGGCATCGTCCTCTGGCTATTTGAGTAccatcctcacacactgcagcccTCACTTCAGTCCTCTATGACCTACCTCTACCACAACAGCAACACATGGCACGACCTGTCTGATTTTCTCATATACAACACACCACGGATTTAAGCTTCTTGAGCATTCTTTTCTATTAAACCACAACTAGTGATGATGGTGAGAAAATTGTCAATCACAAGTTACATAATTTCCTCAGTGTAATCctaattttaaatgaacatatGATAACCTCtgattttgtacttttttgcacatttgtaaattAGTGTTCAAAAAGAGAACTATTTCATAATCGGCAAAATGaataacaaaacacaatttGAACACTTAATTGTTTGTTAAATTAGttattttttaaccttttattgCTCTTTGATGTAGGGCAATGTACTAGGTCCTATTTGAACtttaactttatatattttgcaACAGTGACTGCAAGCAAACAGTTTCTAAACTTATCAGTTAGTCCTTGACACTGTCCGATCACTCATGcataattatttttagtttatgaCCTTTATGGGTGTCAAAGTATTAACTTATTTCAGTCCTTGCTGTAGCAGCTCAGTAATGTGGACCAACTTAATCGTTTATGCTATGCTCTGACATGctctgacattttcatttttttcctttgctttttGGGACTTCTGTGTGATGCAGTGAGATGTAGTCTCTATTTCCTGGATATTCAACTAAATTTTTTGGAGGTCCACCTAATTCTTTGCTTAAAAAGGTACTGATGTGCAGTAAAcacaaataatgaaatttaatgttAAACCATTAATGAGTAGTTAATTactataaataagacacatTAATCTGAACTggatatgttttgtttcatagtagTGCATCACATGACCACATTTGAGTAGCACCAAGGACACGGAGGAGATGAACTTGAagcagagaataaacacacacttctctgtccaattgtctttaaatgttctgcttttgttgttgacttttttaaacaagcaaTGTCCTTATTTCACTAATCAATACAGAGATAgccaaatgaaataataataaaaaaaatcttttaaaa
>XM_026922260.2
CCCTTGTTTCTGATCGACTGGCACGCGCTGTGCACGCGTGACTTTGTCACAGCATTAAGAAACCCTATTACTCAGATATGGCAGGGGCCGATGTTTTGAAAACCCTGCTCTATACAATCAACACCTTCCTCCAGCAGGAAAAATACAAAGCCGCTCTTGCTGTGCTTAAAGGATTCAGGAATGGCGCCGTGTATGGTGCCAAGATCCGGGCTCCACATGCACTGGTGATGACCTTTCTTTTTCGAAGTGGCAGCCTTCAATCCAAGCTGAAAGCTATAGCCCAagccacatatacacactcaagGAACCTAGCCTTCTTTGTATTTTCATATAAAGGACTGTTGGCACTTCAGAAGTACATTCAGGGAAAGAGTCTTCAGTCTCACTCGTTCTTGGCTGCTTGTCTTGGAGGTTGGCTGGTATTTGGGGACAATAACAATATCAACAGCCAGATAAATATGTACTTGCTATCTAGAATTCTGTTTGCCTTGTGTCGCCTGGCTGTGGAAAAGGGCTACATCCCCAAGCCCAAAAGAGACCCCTTCCCACTGTTTGCCACACTGGTGTGGGGCATCGTCCTCTGGCTATTTGAGTAccatcctcacacactgcagcccTCACTTCAGTCCTCTATGACCTACCTCTACCACAACAGCAACACATGGCACGACCTGTCTGATTTTCTCATATACAACACACCACGGATTTAAGCTTCTTGAGCATTCTTTTCTATTAAACCACAACTAGTGATGATGTGAGATGTAGTCTCTATTTCCTGGATATTCAACTAAATTTTTTGGAGGTCCACCTAATTCTTTGCTTAAAAAGGTACTGATGTGCAGTAAAcacaaataatgaaatttaatgttAAACCATTAATGAGTAGTTAATTactataaataagacacatTAATCTGAACTggatatgttttgtttcatagtagTGCATCACATGACCACATTTGAGTAGCACCAAGGACACGGAGGAGATGAACTTGAagcagagaataaacacacacttctctgtccaattgtctttaaatgttctgcttttgttgttgacttttttaaacaagcaaTGTCCTTATTTCACTAATCAATACAGAGATAgccaaatgaaataataataaaaaaaatcttttaaaa
>XR_003403256.2
CCCTTGTTTCTGATCGACTGGCACGCGCTGTGCACGCGTGACTTTGTCACAGCATTAAGAAACCCTATTACTCAGATATGGCAGGGGCCGATGTTTTGAAAACCCTGCTCTATACAATCAACACCTTCCTCCAGCAGGAAAAATACAAAGCCGCTCTTGCTGTGCTTAAAGGATTCAGGAATGGCGCCGTGTATGGTGCCAAGATCCGGGCTCCACATGCACTGGTGATGACCTTTCTTTTTCGAAGTGGCAGCCTTCAATCCAAGCTGAAAGCTATAGCCCAagccacatatacacactcaagGAACCTAGCCTTCTTTGTATTTTCATATAAAGGACTGTTGGCACTTCAGAAGTACATTCAGGGAAAGAGTCTTCAGTCTCACTCGTTCTTGGCTGCTTGTCTTGGAGGTTGGCTGGTATTTGGGGACAATAACAATATCAACAGCCAGATAAATATGTACTTGCTATCTAGAATTCTGTTTGCCTTGTGTCGCCTGGCTGTGGAAAAGGGCTACATCCCCAAGCCCAAAAGAGACCCCTTCCCACTGTTTGCCACACTGGTGTGGGGCATCGTCCTCTGGCTATTTGAGTAccatcctcacacactgcagcccTCACTTCAGTCCTCTATGACCTACCTCTACCACAACAGCAACACATGGCACGACCTGTCTGATTTTCTCATATACAACACACCACGGATTTAAGCTTCTTGAGCATTCTTTTCTATTAAACCACAACTAGTGATGATGGTGAGAAAATTGTCAATCACAAGTTACATAATTTCCTCAGTGTAATCctaattttaaatgaacatatGATAACCTCtgattttgtacttttttgcacatttgtaaattAGTGTTCAAAAAGAGAACTATTTCATAATCGGCAAAATGaataacaaaacacaatttGAACACTTAATTGTTTGTTAAATTAGttattttttaaccttttattgCTCTTTGATGTAGGGCAATGTACTAGGTCCTATTTGAACtttaactttatatattttgcaACAGTGACTGCAAGCAAACAGTTTCTAAACTTATCAGTTAGTCCTTGACACTGTCCGATCACTCATGcataattatttttagtttatgaCCTTTATGGGTGTCAAAGTATTAACTTATTTCAGTCCTTGCTGTAGCAGCTCAGTAATGTGGACCAACTTAATCGTTTATGCTATGCTCTGACATGctctgacattttcatttttttcctttgctttttGGGACTTCTGTGTGATGCAGTGAGATGTAGTCTCTATTTCCTGGATATTCAACTAAATTTTTTGGAGGTCCACCTAATTCTTTGCTTAAAAAGtagTGCATCACATGACCACATTTGAGTAGCACCAAGGACACGGAGGAGATGAACTTGAagcagagaataaacacacacttctctgtccaattgtctttaaatgttctgcttttgttgttgacttttttaaacaagcaaTGTCCTTATTTCACTAATCAATACAGAGATAgccaaatgaaataataataaaaaaaatcttttaaaaa
>XR_003403257.2
CCCTTGTTTCTGATCGACTGGCACGCGCTGTGCACGCGTGACTTTGTCACAGCATTAAGAAACCCTATTACTCAGATATGGCAGGGGCCGATGTTTTGAAAACCCTGCTCTATACAATCAACACCTTCCTCCAGCAGGAAAAATACAAAGCCGCTCTTGCTGTGCTTAAAGGATTCAGGAATGGCGCCGTGTATGGTGCCAAGATCCGGGCTCCACATGCACTGGTGATGACCTTTCTTTTTCGAAGTGGCAGCCTTCAATCCAAGCTGAAAGCTATAGCCCAagccacatatacacactcaagGAACCTAGCCTTCTTTGTATTTTCATATAAAGGACTGTTGGCACTTCAGAAGTACATTCAGGGAAAGAGTCTTCAGTCTCACTCGTTCTTGGCTGCTTGTCTTGGAGGTTGGCTGGTATTTGGGGACAATAACAATATCAACAGCCAGATAAATATGTACTTGCTATCTAGAATTCTGTTTGCCTTGTGTCGCCTGGCTGTGGAAAAGGGCTACATCCCCAAGCCCAAAAGAGACCCCTTCCCACTGTTTGCCACACTGGTGTGGGGCATCGTCCTCTGGCTATTTGAGTAccatcctcacacactgcagcccTCACTTCAGTCCTCTATGACCTACCTCTACCACAACAGCAACACATGGCACGACCTGTCTGATTTTCTCATATACAACACACCACGGATTTAAGCTTCTTGAGCATTCTTTTCTATTAAACCACAACTAGTGATGATGTGAGATGTAGTCTCTATTTCCTGGATATTCAACTAAATTTTTTGGAGGTCCACCTAATTCTTTGCTTAAAAAGtagTGCATCACATGACCACATTTGAGTAGCACCAAGGACACGGAGGAGATGAACTTGAagcagagaataaacacacacttctctgtccaattgtctttaaatgttctgcttttgttgttgacttttttaaacaagcaaTGTCCTTATTTCACTAATCAATACAGAGATAgccaaatgaaataataataaaaaaaatcttttaaaa

Function

symbol description
pxmp4 Predicted to be located in membrane and peroxisome. Predicted to be integral component of membrane. Predicted to be active in peroxisomal membrane. Orthologous to human PXMP4 (peroxisomal membrane protein 4).

NR:

description
peroxisomal membrane protein 4

GO: NA

KEGG:

id description
K13350 PXMP4, PMP24; peroxisomal membrane protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922253.2 True 1656 mRNA 0.38 4 14872949 14875990
XM_026922260.2 False 1146 mRNA 0.41 5 14872949 14875990
XR_003403256.2 False 1544 misc_RNA 0.39 5 14872948 14875990
XR_003403257.2 False 1033 misc_RNA 0.43 6 14872949 14875990

Neighbor

gene id symbol gene type direction distance location
tgm5l LOC108272022 coding downstream 3245 14862967 ~ 14869703 (-)
vstm2l LOC108271577 coding downstream 58501 14797637 ~ 14814447 (-)
dlgap4b LOC108272050,LOC108427631 coding downstream 170913 14600663 ~ 14702035 (-)
LOC113529797 LOC108271527,LOC107705866 coding downstream 274402 14591405 ~ 14598546 (-)
zgc:123305 LOC108271928,LOC107385524 coding downstream 291648 14562176 ~ 14581300 (-)
LOC113534431 grm7,LOC108271537,LOC108272196,LOC108427575,LOC107708172,LOC107549321 coding upstream 11475 14887465 ~ 15009183 (-)
LOC113535748 rassf1 coding upstream 134837 15010827 ~ 15024533 (-)
zmynd10 zmynd10 coding upstream 149137 15025127 ~ 15032562 (-)
nprl2 nprl2 coding upstream 157456 15033446 ~ 15039603 (-)
gpx1b gpx1,gpx1b,LOC103035764,LOC108436253,LOC107657914,LOC105017170 coding upstream 400915 15276905 ~ 15278713 (-)
G27484 NA non-coding downstream 12702 14860005 ~ 14860246 (-)
G27448 NA non-coding downstream 82307 14790431 ~ 14790641 (-)
G27303 NA non-coding downstream 380109 14492637 ~ 14492839 (-)
G27259 NA non-coding downstream 418657 14444626 ~ 14454291 (-)
G27254 NA non-coding downstream 471519 14354841 ~ 14401429 (-)
G27502 NA non-coding upstream 8265 14884255 ~ 14884487 (-)
G27600 NA non-coding upstream 134335 15010325 ~ 15010661 (-)
G27652 NA non-coding upstream 188895 15064885 ~ 15065211 (-)
G27699 NA non-coding upstream 254013 15130003 ~ 15130260 (-)
G27705 NA non-coding upstream 268715 15144705 ~ 15146155 (-)
G27107 LOC108272123 other downstream 814503 14050401 ~ 14058445 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other downstream 965759 13864944 ~ 13907189 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other downstream 1225771 13640381 ~ 13647177 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other downstream 1238204 13632262 ~ 13634744 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other downstream 1370778 13493512 ~ 13502170 (-)
G27843 NA other upstream 421319 15297309 ~ 15299019 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other upstream 580645 15456635 ~ 15461001 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other upstream 585960 15461950 ~ 15495209 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other upstream 1249840 16125830 ~ 16135715 (-)
G29158 NA other upstream 2396965 17272955 ~ 17280173 (-)

Expression


Co-expression Network