jak1 (jak1,LOC107739023,LOC107556544,LOC107659055)


Basic Information

Item Value
gene id jak1
gene name jak1,LOC107739023,LOC107556544,LOC107659055
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 21408754 ~ 21448083 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923012.2
TCTTTAGACGCTTGATAGGAAAGGTTTGTTCAGCTAGGAAGAGTGACCGTACATTATGTCTGTTACTAAACTAAAGGCTTTCACCGGAAAATATCAATTCTACACGCGAGATTGATACATATTCACGAATTCGAAGACGAAGAGGTTTTTTACTGTGTTTGGTGATGACTGAAAACGGGCGGAAGTAACTTTATCTTGTCTGTGTCTGAATGCCAAAGTTAGAAGTCATGGAGCTGGGCAGGCAGCTGTGTGGGAAGatgaagaaacagaagaaggtGGAGTTGGCCATCCCTGCCGTCATGAAAGGCCTCGAGATCCACTTCTACCTGCCTGACACCCACCAACTTGAGTACTTTAAAGACTGCCACACTGCAGAGGACCTGTGTGAAGAGGCCGCCAAGAGATGTCGTATTTCACCCCTGTGCCATAACCTGTTTGCCCTGTATGAAGAAAGTCAGGAGCTCTGGTATGCACCCAATCATGTATTCAAGATCACTGAAGACACCAGTATTAAGCTTCACTACCGCATGAGGTTTTATTTCACAAACTGGCACGGAACTTCTGATAAAGAGTCTCCTGTGTGGCGCCATTCTTTGAGCAAACAGAAGGGGGCTAAAGGCCCGGAGGGAACGCCATTGCTTGATGCTGCCTCTCTTGACTACCTGTTTGCTCAGGGACAGTATGATTTTCTGAGGGGACTGGCACCGGTACGTATGCCCCAGAGTGAGGCGGAGCTCCATGAGATAGAGAATGAGTGCCTGGGCATGGCTGTCCTCGCCATCACTCATCATGCCAAGAGCAACAACCTGCCCCTGTCAGGATCAGGGGCAGAAACCAGCTAcaagcgttttattcctgaGAGCCTCAACCGCACCATTAAGCAGCGCAGCTTCCTGACTCGTATGCGTATCAGCAACGTTTTTAAGAACTTCCTTAATGAGTTCAACAGCAAGACCATCCGGGACAGTAATATCACCCTATATGACCTGAAGGTGAAGTACCTCTCCACGCTGGAGACGCTGACATGGGGCTTGGGCTGTGAAACGGTGGAACCTAAAAGCCTGCGCGTGTGTGGGGAGGGTGAGgtctcacctacacacaccccCAGCATGGGGGATGAGGGACAGGGTTACGAAGTGCAGGTGTGTGGCACAACTGGCATCTCATGGAGGAAGAAGCTTCAGCAGAATGCGCTGACTCTCAAAGACAGAAGTAAATCACGGAAGACAAAGACTGATTACAAACAGAACAATGACAAAACGAACGATGCCAGCAATGGATGGATCCTCTTCTCTGACTTTTATGAAATCACTCACATCGTCACAAAAGAGGCTGGCATCACCATATACAGACAGGACAACAAAACCATGGAGCTACAGTTGGGCTATCGCGAAGAGGCTCTGGCTTTTGCTGCGCTGGTGGACGGATATTTCAGACTGACCGTAGATGCCCATCACTACCTCTGCACTGAGGTAGCGCCTTCTTCTGTGGTACAGAATCTGCAGAACGGCTGCCACGGACCCATCTGTACGGAGTATGCCATTCACAAACTGAGGCAGGAGGGCAATGAAGAGGGCTCCTATGTCCTGCGATGGAGCTGTACAGACTATGACTATATCATCATGACTGTCGTCTGCATGGAGCTGGACTTGTGCCAGTCCAGGCCTGTTCCCCAGTATAAGAACTTCCAGATCGAGGTGGGTTCTCAGGGCTTCAGGCTGTTTGGGACAGAAACGTTCAGGACGAGTCTAAAAGAGCTGCTGGAGCACCTGCAGGGTCAGAGCCTCCGCACAGAGAACCTGCGATTTCAGTTGCGCCGCTGCTGTCCTCCACAGCCCCGAGAGGTTTCCAATCTTTTGGTGATGACCTCTGACAGAGAGCCCGTCCCACAGAGACAGCCTCAAGTCAGCCAGCTGAGTTTCCACCGCATCCGTAATGAGGAGATTGTCCAGGGAGAACATTTGGGTCTGGGCACCAGGACCAACATCTATGCAGGTgtgctgaagatgaaaagtgaggatgaggatgatttGGGGAGCTGCTGCGCATCACAGGAGGTGAAGGTGGTACTGAAAGTGCTCGGCTCTGGACACAGGGATATATCTCTGGCCTTCTTTGAGACAGCCAGCATGATGCGACAggtctcacacaaacacatcgcCTTGttgtttggagtgtgtgtgcatcaccAGGAGAATATTATGGTTGAGGAGTTTGTGCAGTTCGGTCCTCTTGATCTGTTCATGCGCAGAGAGACTGTTCCTCTCAGCACTTCATGGAAGTTCCAGGTGGCCAAACAGCTGGCAAGCGCCCTCAGTTATCTGGAGGATAAGAAGCTTGTGCATGGGTACGTTTGTGCTAAGAACATTCTTTTGGCTCGAGACGGACTGGACAGCGATGGCGGTCCCTTCATCAAGCTTAGTGACCCTGGCATCCCCATCACCGTGCTAACCCGAGAGGAGTGTGTGGACCGGATTCCTTGGATTGCTCCCGAGTGTGTGCAGGATACGGCTAACCTGAGCGTAGCAGCAGATAAGTGGGGCTTTGGCACAACTCTGTGGGAGATATGCTATAACGGAGAAATTCCTCTGAAAGACAAGAAACTCACTGAGAAGGAGAGGTTTTACGCAGCTCAGTGTCACTTGGCCACACCAGACTGTGAGGAGCTTGCCAATCTCATGACCCACTGCATGACCTACGACCCTCACCAAAGACCCTTCTTCAGGGCCATTGTCCGAGACATTGACATGGTGGAAAAACAGAATCCCTCTATTAAGCCTGTACCCACCCTAGAGGTCGACCCCACCGTGTTTGAGAAGAGATTCCTCAAGAAGATCAGAGACCTGGGAGAGggGCATTTTGGAAAGGTGGAGCTGTGCCGATATGACCCGCGCGGGGATCGGACAGGAGAGCTGGTGGCAGTAAAGTCCCTGAAACCAGAGAGCCGAGAAGAGCAAAGCGGCAATCTGTGGTGTGAAATTGACATCCTGAAAGAGCTCTACCATGAGAACATTGTCAAATACAAAGGCATCTGCCAGGAGGAGGGTGGCAGATCCACCAAACTCATTATGGAGTATTTACCAGCAGGCAGTCTGAAGGAATACTTGCCCAGGAACAAACTACAGACCAATCTGAAGACCCTGCTAAGCTACGCTGTCCAAATCTGCCAGGGTATGGATTATCTGGGCTCTCGGAATTACATCCACCGAGACCTGGCTGCTCGGAACGTCCTGGTGGAGAACGAGAGCACGGTGAAGATTGGAGACTTTGGCCTGACTAAAAGCATTAAAGACAACGAGGGCTATTACACAGTGAAGGATGACCTGGACAGCCCTGTGTTTTGGTATGCTCCAGAATGCCTGGTTCACTGTAAGTTCTACAGGGCATCAGATGTCTGGTCATTTGGAGTGACTATGTACGAACTCCTGACATACTGCGATGCCTCGTGCAGCCCCATGTCGGTCTTCCTCAAAATGATTGGACCAACCCATGGCCAGATGACAGTCACCAGATTGGTCAAGGTTCTGGAGGAGGGGAAGAGATTGCCTAAGCCAGAGATCTGCTCAGACAAGGTGTACGCTTTAATGAAGAGGTGCTGGGAGAGCACACCTGACAAAAGGATCGATTTCAAAGGCCTCATCGCTGCTTTTCAGCAAATGCTTGGTGACGGCATGTAACCATGGAAATCAGCTGCATTACACACTCCACCTGCCTGACCAGAGACAGTGCGAGGGGTCGCCACGGTGAACTTTTTACTCAAAGAAGACTTCAGGAGAACATTTTCCACTGACTTGTCCAGAAGGATCTTTCACATGCTGTGTTATATTGTTTTACTCACATACTGTGTGTCACGGTATTACCACAGAGTGCAGCCATTATGCAAAGTGACATCATCACTCAACCACAGGGCACAAAGCAGCACCTACATCACTCACTATGAGTTTGCAAGTATAGACCTACACGCCTCTATTCTGTTAAACATACACCTACACTTCCTCTACTGAAATCAGTGACTGCACCGAATTATTACTTTGTGTTCAATGCCATTTTATATTCTTAATGTACTTTTTGCAGAGCTGTGTTACACAGTTTCAGCAGTGTGCGTTTGTGTAATCGGTCATTTGTGCAATGCAGGATGTTGTTTGCTGAAACGTGTCACATGTCGCACgtacaaagagagaaagaaaagctaCAGGAAGTGTTTTGCCACGTGTCATGAGGCAGATTTGCTTGTGAAGCTGGATTTGTGCTGCCGAGGGGACGACACGTCTGCACGGAGATATGCAGAGTTGGGAGAATGTTTCTCCTTTTCCATGGAACGTTCTGGAACAGCACTTGGTCCTGTGTTTTcatatgattttatttctcatgCAGTTCCCTCTTCTCTTGAGCCTTCTCTTTTCCATGAAAGACTGAAAAGGACATGCATCTTGGAATCTGGAAGGCAGTATTTTTTTGCCGTGCATTGAGTGACATTAAATGCCTACAATAGGCACTAGAGGACAGTAGAGATTACAGAATATCCCCTTATATCTAGTAAGACGTATACTTGCTTAAATCTTACATAAActaaaatagcattttaaatCTGGAAATCGCTGAGCctgaatattttatcatttgtatCTACAGAAATTAAAGGCAAAATATATTGGGGCCAGTATGCATTGTTATAAAGATGTATTCTCATTATCCTCATTGTAACTGAA
>XM_026923022.2
TCTTTAGACGCTTGATAGGAAAGGTTTGTTCAGCTAGGAAGAGTGACCGTACATTATGTCTGTTACTAAACTAAAGGCTTTCACCGGAAAATATCAATTCTACACGCGAGATTGATACATATTCACGAATTCGAAGACGAAGAGGTTTTTTACTGTGTTTGGTGATGACTGAAAACGGGCGGAAGTAACTTTATCTTGTCTGtctctctctttctctctgtctctctgctgcaGTGTCTGAATGCCAAAGTTAGAAGTCATGGAGCTGGGCAGGCAGCTGTGTGGGAAGatgaagaaacagaagaaggtGGAGTTGGCCATCCCTGCCGTCATGAAAGGCCTCGAGATCCACTTCTACCTGCCTGACACCCACCAACTTGAGTACTTTAAAGACTGCCACACTGCAGAGGACCTGTGTGAAGAGGCCGCCAAGAGATGTCGTATTTCACCCCTGTGCCATAACCTGTTTGCCCTGTATGAAGAAAGTCAGGAGCTCTGGTATGCACCCAATCATGTATTCAAGATCACTGAAGACACCAGTATTAAGCTTCACTACCGCATGAGGTTTTATTTCACAAACTGGCACGGAACTTCTGATAAAGAGTCTCCTGTGTGGCGCCATTCTTTGAGCAAACAGAAGGGGGCTAAAGGCCCGGAGGGAACGCCATTGCTTGATGCTGCCTCTCTTGACTACCTGTTTGCTCAGGGACAGTATGATTTTCTGAGGGGACTGGCACCGGTACGTATGCCCCAGAGTGAGGCGGAGCTCCATGAGATAGAGAATGAGTGCCTGGGCATGGCTGTCCTCGCCATCACTCATCATGCCAAGAGCAACAACCTGCCCCTGTCAGGATCAGGGGCAGAAACCAGCTAcaagcgttttattcctgaGAGCCTCAACCGCACCATTAAGCAGCGCAGCTTCCTGACTCGTATGCGTATCAGCAACGTTTTTAAGAACTTCCTTAATGAGTTCAACAGCAAGACCATCCGGGACAGTAATATCACCCTATATGACCTGAAGGTGAAGTACCTCTCCACGCTGGAGACGCTGACATGGGGCTTGGGCTGTGAAACGGTGGAACCTAAAAGCCTGCGCGTGTGTGGGGAGGGTGAGgtctcacctacacacaccccCAGCATGGGGGATGAGGGACAGGGTTACGAAGTGCAGGTGTGTGGCACAACTGGCATCTCATGGAGGAAGAAGCTTCAGCAGAATGCGCTGACTCTCAAAGACAGAAGTAAATCACGGAAGACAAAGACTGATTACAAACAGAACAATGACAAAACGAACGATGCCAGCAATGGATGGATCCTCTTCTCTGACTTTTATGAAATCACTCACATCGTCACAAAAGAGGCTGGCATCACCATATACAGACAGGACAACAAAACCATGGAGCTACAGTTGGGCTATCGCGAAGAGGCTCTGGCTTTTGCTGCGCTGGTGGACGGATATTTCAGACTGACCGTAGATGCCCATCACTACCTCTGCACTGAGGTAGCGCCTTCTTCTGTGGTACAGAATCTGCAGAACGGCTGCCACGGACCCATCTGTACGGAGTATGCCATTCACAAACTGAGGCAGGAGGGCAATGAAGAGGGCTCCTATGTCCTGCGATGGAGCTGTACAGACTATGACTATATCATCATGACTGTCGTCTGCATGGAGCTGGACTTGTGCCAGTCCAGGCCTGTTCCCCAGTATAAGAACTTCCAGATCGAGGTGGGTTCTCAGGGCTTCAGGCTGTTTGGGACAGAAACGTTCAGGACGAGTCTAAAAGAGCTGCTGGAGCACCTGCAGGGTCAGAGCCTCCGCACAGAGAACCTGCGATTTCAGTTGCGCCGCTGCTGTCCTCCACAGCCCCGAGAGGTTTCCAATCTTTTGGTGATGACCTCTGACAGAGAGCCCGTCCCACAGAGACAGCCTCAAGTCAGCCAGCTGAGTTTCCACCGCATCCGTAATGAGGAGATTGTCCAGGGAGAACATTTGGGTCTGGGCACCAGGACCAACATCTATGCAGGTgtgctgaagatgaaaagtgaggatgaggatgatttGGGGAGCTGCTGCGCATCACAGGAGGTGAAGGTGGTACTGAAAGTGCTCGGCTCTGGACACAGGGATATATCTCTGGCCTTCTTTGAGACAGCCAGCATGATGCGACAggtctcacacaaacacatcgcCTTGttgtttggagtgtgtgtgcatcaccAGGAGAATATTATGGTTGAGGAGTTTGTGCAGTTCGGTCCTCTTGATCTGTTCATGCGCAGAGAGACTGTTCCTCTCAGCACTTCATGGAAGTTCCAGGTGGCCAAACAGCTGGCAAGCGCCCTCAGTTATCTGGAGGATAAGAAGCTTGTGCATGGGTACGTTTGTGCTAAGAACATTCTTTTGGCTCGAGACGGACTGGACAGCGATGGCGGTCCCTTCATCAAGCTTAGTGACCCTGGCATCCCCATCACCGTGCTAACCCGAGAGGAGTGTGTGGACCGGATTCCTTGGATTGCTCCCGAGTGTGTGCAGGATACGGCTAACCTGAGCGTAGCAGCAGATAAGTGGGGCTTTGGCACAACTCTGTGGGAGATATGCTATAACGGAGAAATTCCTCTGAAAGACAAGAAACTCACTGAGAAGGAGAGGTTTTACGCAGCTCAGTGTCACTTGGCCACACCAGACTGTGAGGAGCTTGCCAATCTCATGACCCACTGCATGACCTACGACCCTCACCAAAGACCCTTCTTCAGGGCCATTGTCCGAGACATTGACATGGTGGAAAAACAGAATCCCTCTATTAAGCCTGTACCCACCCTAGAGGTCGACCCCACCGTGTTTGAGAAGAGATTCCTCAAGAAGATCAGAGACCTGGGAGAGggGCATTTTGGAAAGGTGGAGCTGTGCCGATATGACCCGCGCGGGGATCGGACAGGAGAGCTGGTGGCAGTAAAGTCCCTGAAACCAGAGAGCCGAGAAGAGCAAAGCGGCAATCTGTGGTGTGAAATTGACATCCTGAAAGAGCTCTACCATGAGAACATTGTCAAATACAAAGGCATCTGCCAGGAGGAGGGTGGCAGATCCACCAAACTCATTATGGAGTATTTACCAGCAGGCAGTCTGAAGGAATACTTGCCCAGGAACAAACTACAGACCAATCTGAAGACCCTGCTAAGCTACGCTGTCCAAATCTGCCAGGGTATGGATTATCTGGGCTCTCGGAATTACATCCACCGAGACCTGGCTGCTCGGAACGTCCTGGTGGAGAACGAGAGCACGGTGAAGATTGGAGACTTTGGCCTGACTAAAAGCATTAAAGACAACGAGGGCTATTACACAGTGAAGGATGACCTGGACAGCCCTGTGTTTTGGTATGCTCCAGAATGCCTGGTTCACTGTAAGTTCTACAGGGCATCAGATGTCTGGTCATTTGGAGTGACTATGTACGAACTCCTGACATACTGCGATGCCTCGTGCAGCCCCATGTCGGTCTTCCTCAAAATGATTGGACCAACCCATGGCCAGATGACAGTCACCAGATTGGTCAAGGTTCTGGAGGAGGGGAAGAGATTGCCTAAGCCAGAGATCTGCTCAGACAAGGTGTACGCTTTAATGAAGAGGTGCTGGGAGAGCACACCTGACAAAAGGATCGATTTCAAAGGCCTCATCGCTGCTTTTCAGCAAATGCTTGGTGACGGCATGTAACCATGGAAATCAGCTGCATTACACACTCCACCTGCCTGACCAGAGACAGTGCGAGGGGTCGCCACGGTGAACTTTTTACTCAAAGAAGACTTCAGGAGAACATTTTCCACTGACTTGTCCAGAAGGATCTTTCACATGCTGTGTTATATTGTTTTACTCACATACTGTGTGTCACGGTATTACCACAGAGTGCAGCCATTATGCAAAGTGACATCATCACTCAACCACAGGGCACAAAGCAGCACCTACATCACTCACTATGAGTTTGCAAGTATAGACCTACACGCCTCTATTCTGTTAAACATACACCTACACTTCCTCTACTGAAATCAGTGACTGCACCGAATTATTACTTTGTGTTCAATGCCATTTTATATTCTTAATGTACTTTTTGCAGAGCTGTGTTACACAGTTTCAGCAGTGTGCGTTTGTGTAATCGGTCATTTGTGCAATGCAGGATGTTGTTTGCTGAAACGTGTCACATGTCGCACgtacaaagagagaaagaaaagctaCAGGAAGTGTTTTGCCACGTGTCATGAGGCAGATTTGCTTGTGAAGCTGGATTTGTGCTGCCGAGGGGACGACACGTCTGCACGGAGATATGCAGAGTTGGGAGAATGTTTCTCCTTTTCCATGGAACGTTCTGGAACAGCACTTGGTCCTGTGTTTTcatatgattttatttctcatgCAGTTCCCTCTTCTCTTGAGCCTTCTCTTTTCCATGAAAGACTGAAAAGGACATGCATCTTGGAATCTGGAAGGCAGTATTTTTTTGCCGTGCATTGAGTGACATTAAATGCCTACAATAGGCACTAGAGGACAGTAGAGATTACAGAATATCCCCTTATATCTAGTAAGACGTATACTTGCTTAAATCTTACATAAActaaaatagcattttaaatCTGGAAATCGCTGAGCctgaatattttatcatttgtatCTACAGAAATTAAAGGCAAAATATATTGGGGCCAGTATGCATTGTTATAAAGATGTATTCTCATTATCCTCATTGTAACTGAA

Function

symbol description
jak1 Predicted to enable ATP binding activity; metal ion binding activity; and non-membrane spanning protein tyrosine kinase activity. Acts upstream of or within T cell differentiation in thymus. Predicted to be located in cytoskeleton; endomembrane system; and membrane. Is expressed in cranial ganglion; otic vesicle; somite; and vasculature. Human ortholog(s) of this gene implicated in T-cell acute lymphoblastic leukemia; colorectal cancer; hepatocellular carcinoma; ovarian cancer; and pancreatic adenocarcinoma. Orthologous to human JAK1 (Janus kinase 1).

NR:

description
tyrosine-protein kinase JAK1

GO: NA

KEGG:

id description
K11217 JAK1; Janus kinase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923012.2 False 4709 mRNA 0.49 24 21408754 21448083
XM_026923022.2 True 4741 mRNA 0.49 24 21408754 21448083

Neighbor

gene id symbol gene type direction distance location
wdr78 wdr78 coding upstream 397024 20999483 ~ 21011730 (+)
ttc22 ttc22 coding upstream 419887 20982532 ~ 20988867 (+)
wwc3 wwc3 coding upstream 460117 20894023 ~ 20948637 (+)
cldn34a cldn34 coding upstream 528287 20876945 ~ 20880467 (+)
shroom2a shroom2 coding upstream 537058 20824340 ~ 20871696 (+)
si:dkey-148h10.5 NA coding downstream 335709 21783792 ~ 21795509 (+)
dock7 dock7 coding downstream 521891 21969974 ~ 22034090 (+)
kank4 kank4 coding downstream 600433 22048516 ~ 22101105 (+)
LOC117599931 LOC108271599 coding downstream 661865 22109948 ~ 22119632 (+)
cyldl LOC108271977 coding downstream 944745 22392828 ~ 22406479 (+)
LOC113526220 NA non-coding upstream 2368 21402242 ~ 21406386 (+)
G31260 NA non-coding upstream 23412 21385006 ~ 21385342 (+)
G30791 NA non-coding upstream 314938 21093614 ~ 21093816 (+)
G30747 NA non-coding upstream 445113 20963432 ~ 20963641 (+)
G30715 NA non-coding upstream 519044 20835487 ~ 20889710 (+)
G31384 NA non-coding downstream 161150 21609233 ~ 21612878 (+)
LOC117599889 NA non-coding downstream 188101 21636184 ~ 21642350 (+)
G31565 NA non-coding downstream 378415 21826498 ~ 21826735 (+)
G31567 NA non-coding downstream 382643 21830726 ~ 21830939 (+)
G31693 NA non-coding downstream 700115 22148198 ~ 22148470 (+)
insl5a insl5 other upstream 390887 21014838 ~ 21017867 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other upstream 750674 20536973 ~ 20658080 (+)
LOC113543059 c11h1orf146 other upstream 1388528 20000046 ~ 20020226 (+)
smx5 lsm2,LSM2,smx5 other upstream 1871557 19534345 ~ 19537197 (+)
LOC113533886 espnl other upstream 2321543 19061097 ~ 19087211 (+)
tmem69 tmem69 other downstream 1149512 22597595 ~ 22603436 (+)
uhmk1 uhmk1,LOC107692420 other downstream 2185523 23633606 ~ 23653555 (+)
G32684 NA other downstream 2572295 24020378 ~ 24021036 (+)
LOC117598985 NA other downstream 3204907 24652990 ~ 24656248 (+)
trak2 LOC108271640 other downstream 4308731 25756814 ~ 25784890 (+)

Expression


Co-expression Network