bcl6aa (bcl6)


Basic Information

Item Value
gene id bcl6aa
gene name bcl6
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 19544152 ~ 19552693 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923309.2
TCTTAGAACAGGGGTTCTTAGAAGTGGTGATGCAAGAAGTTTCTAGGAAAGCACTACCagATCTTGACAAAATGTCTTGCGCAGCAGACAGCTGCATCCAGTTCACACGCCATGCCAGCGACGTCCTGCTCAACCTGAACCGGCTGCGCAGCAGAGACATCCTCACAGACGTCACCATTCTGGTCAACAGACAGCAGTTTCGCGCTCACAAGACTGTCCTCATGGCATGCAGTGGGCTCTTTTATTCAATATTCACTGACTCTCTAAAATGCAACATGAACGCCATAAGTCTGGACCCGAAGGTTGACCCAGAAGGCTTTGCAGTCCTCCTGGAGTTCATGTACACTTCCCGTCTCGCGCTGAAAGAGAGCCTCATCATGTCGGTCATGAACACGGCCATCTACCTGCAGATGGACCACGTTGTCGACACCTGCCACAGATTCATTAAGTCCAGTGACTCCTCCATCAAACTGCCCAGAGAGGATTTCCTGGTCAGCCCTCTGCTTTTACCTCAAGATGTTCATGGTTACAGGCCACATGAGGTTGTGGAGAACATGGCAGGACGATCCGGCTCTTTCCGTGACGGAAGGCCTTATGGTGCCATATTTACCGGAGTGAACACTCCCAGCAGCTCCTATCATATTTATAGCCAGATCCCCATGCAGGCGTTCCCTTTCCCCCTCTGTAAGCTGACAGACACCAAAAACACTTTTCCCGACTTTGCCAAAGGAGGCATCCTCCAACACAAGCACTGCCCACCAGGCGACGACTTTGCACGCAGCTCCAACGCCAGCCACTCGAGCTCATGCCACTCTGATGCCTACTCCTCCCGGGTGCTGGGGAGAAACGACGAAATGAAAAGGGAGAGCTTGCAAGGCTTGGCTCAGTCCATTGTTATGAATTCTAGAAAGCACGGACTCGCGAGCCTGGCCCAGGAGCATCAGAGAGACGTGGGCAAAGAGCAGGTTCCTTTGGCTGAAGGCGAGCTGAGCCAGCAGCCCTACTCTGTGGGTATGGCCTCCAGCGGGCACAAAGCTCTGATTAGCAGCCCGCAGAGCCCTTTAAAATCTGACTGCCAGCCCAATTCACCCACAGAATCAAGCAGCAGCAAGAATGCCACACTCTCGCACGCCTCTCAGCCTCCGACTCCACAGGGCATGCAGGACCCAAAGGCTCGCAactggaaaaaatataaattcattGTGCTCAATCAGAGCACCAAGGAGGAAGAGAGCAGCACTCATGAACCTGAGATGCGCTCACCCCAGAGGCTGGCTTTCCATCCCTCACCTGAATCTGAGCAGCCAGACATGCAGCCTGCCAGCACAAAGATCACTGAACATGGAGATGACTTCACTGTGCCCCAAGCCAGCCGCCTCAACAATATCATTAACAGAAGTCTGGAGGGTACACAGAGGAATGGTGACAGCCACTCTTCTCTTTATCTGAGCCACTTAAAGTGCACATCCTGTGGCTCACAGTCCCCACAACACTCAGATGTTTGTCCCAACACTCCTGGCTCGCGCCTTAATGAGGAGATGGCCGAGCTGCACTCTGAGTATTCCGACTCCAGCTGTGAAAACGGTACCTACTTTTGTAATGAATGCGACTCCAAATTTGCAGAGGAGGAAGTCTTAAAACGCCACATGCTTCAGGTGCACAGCGACAAGCCATACAAATGTGACCGTTGCCAAGCAGCATTCCGCTACAAGGGAAACCTCGCTAGCCACAAGACGGTACACACAGGTaaaggagagaagccgtatcgaTGCAACATCTGCGGCGCACAGTTCAATCGACCAGCTAACCTCAAGACCCACACGCGCATCCACTCTGGAGAAAAGCCATACAAGTGTGAGACCTGCGGGGCTCGATTCGTTCAGGTAGCTCACCTGCGCGCCCACGTCCTGatccacacaggagagaagccatatcCCTGCGAAATCTGTGGCACACGATTCCGACACCTGCAGACGCTCAAGAGTCATCTGCGCAtacacacaggagaaaaaccTTACCATtgtgAGAAATGCAACTTGCACTTTCGCCATAAGAGCCAGCTTCGGCTGCACTTGCGACAGAAGCACGGTGCCATCACCAACACCAAGATTCAGTACCGTGTGTCCACAGCAGATCTGCCAGATTTGACCAAGgcctgctgaacacacacaaacacacaagggCTGAACCACAGCATTCTCTGAGCCCTACTTGGACAATCATCTAAAACTGTAGTGCCACACTGTGTTGAtcagacaagaagaaaaaaaaaaaaaataatcaaggcATTTAATGCCATTCTACGGGTTTCCTCTATATGTGAACATAGAACCACATAAGGTCTCTTGtcactttattgtttatatttgcatataaatatacagtaatgttGAGTGTTTTTAAGctttcagttatttaaaaaaaaaaa
>XM_026923318.2
TCTTAGAACAGGGGTTCTTAGAAGTGGTGATGCAAGAAGTTTCTAGGAAAGCACTACCagATCTTGACAAAATGTCTTGCGCAGCAGACAGCTGCATCCAGTTCACACGCCATGCCAGCGACGTCCTGCTCAACCTGAACCGGCTGCGCAGCAGAGACATCCTCACAGACGTCACCATTCTGGTCAACAGACAGCAGTTTCGCGCTCACAAGACTGTCCTCATGGCATGCAGTGGGCTCTTTTATTCAATATTCACTGACTCTCTAAAATGCAACATGAACGCCATAAGTCTGGACCCGAAGGTTGACCCAGAAGGCTTTGCAGTCCTCCTGGAGTTCATGTACACTTCCCGTCTCGCGCTGAAAGAGAGCCTCATCATGTCGGTCATGAACACGGCCATCTACCTGCAGATGGACCACGTTGTCGACACCTGCCACAGATTCATTAAGTCCAGTGACTCCTCCATCAAACTGCCCAGAGAGGATTTCCTGGTCAGCCCTCTGCTTTTACCTCAAGATGTTCATGGTTACAGGCCACATGAGGTTGTGGAGAACATGGCAGGACGATCCGGCTCTTTCCGTGACGGAAGGCCTTATGGTGCCATATTTACCGGAGTGAACACTCCCAGCAGCTCCTATCATATTTATAGCCAGATCCCCATGCAGGCGTTCCCTTTCCCCCTCTGTAAGCTGACAGACACCAAAAACACTTTTCCCGACTTTGCCAAAGGAGGCATCCTCCAACACAAGCACTGCCCACCAGGCGACGACTTTGCACGCAGCTCCAACGCCAGCCACTCGAGCTCATGCCACTCTGATGCCTACTCCTCCCGGGTGCTGGGGAGAAACGACGAAATGAAAAGGGAGAGCTTGCAAGGCTTGGCTCAGTCCATTGTTATGAATTCTAGAAAGCACGGACTCGCGAGCCTGGCCCAGGAGCATCAGAGAGACGTGGGCAAAGAGCAGGTTCCTTTGGCTGAAGGCGAGCTGAGCCAGCAGCCCTACTCTGTGGGTATGGCCTCCAGCGGGCACAAAGCTCTGATTAGCAGCCCGCAGAGCCCTTTAAAATCTGACTGCCAGCCCAATTCACCCACAGAATCAAGCAGCAGCAAGAATGCCACACTCTCGCACGCCTCTCAGCCTCCGACTCCACAGGGCATGCAGGACCCAAAGGCTCGCAactggaaaaaatataaattcattGTGCTCAATCAGAGCACCAAGGAGGAAGAGAGCAGCACTCATGAACCTGAGATGCGCTCACCCCAGAGGCTGGCTTTCCATCCCTCACCTGAATCTGAGCAGCCAGACATGCAGCCTGCCAGCACAAAGATCACTGAACATGGAGATGACTTCACTGTGCCCCAAGCCAGCCGCCTCAACAATATCATTAACAGAAGTCTGGAGGGTACACAGAGGAATGGTGACAGCCACTCTTCTCTTTATCTGAGCCACTTAAAGTGCACATCCTGTGGCTCACAGTCCCCACAACACTCAGATGTTTGTCCCAACACTCCTGGCTCGCGCCTTAATGAGGAGATGGCCGAGCTGCACTCTGAGTATTCCGACTCCAGCTGTGAAAACGGTACCTACTTTTGTAATGAATGCGACTCCAAATTTGCAGAGGAGGAAGTCTTAAAACGCCACATGCTTCAGGTGCACAGCGACAAGCCATACAAATGTGACCGTTGCCAAGCAGCATTCCGCTACAAGGGAAACCTCGCTAGCCACAAGACGGTACACACAGgagagaagccgtatcgaTGCAACATCTGCGGCGCACAGTTCAATCGACCAGCTAACCTCAAGACCCACACGCGCATCCACTCTGGAGAAAAGCCATACAAGTGTGAGACCTGCGGGGCTCGATTCGTTCAGGTAGCTCACCTGCGCGCCCACGTCCTGatccacacaggagagaagccatatcCCTGCGAAATCTGTGGCACACGATTCCGACACCTGCAGACGCTCAAGAGTCATCTGCGCAtacacacaggagaaaaaccTTACCATtgtgAGAAATGCAACTTGCACTTTCGCCATAAGAGCCAGCTTCGGCTGCACTTGCGACAGAAGCACGGTGCCATCACCAACACCAAGATTCAGTACCGTGTGTCCACAGCAGATCTGCCAGATTTGACCAAGgcctgctgaacacacacaaacacacaagggCTGAACCACAGCATTCTCTGAGCCCTACTTGGACAATCATCTAAAACTGTAGTGCCACACTGTGTTGAtcagacaagaagaaaaaaaaaaaaaataatcaaggcATTTAATGCCATTCTACGGGTTTCCTCTATATGTGAACATAGAACCACATAAGGTCTCTTGtcactttattgtttatatttgcatataaatatacagtaatgttGAGTGTTTTTAAGctttcagttatttaaaaaaaaaaa

Function

symbol description
bcl6 Enables several functions, including DNA-binding transcription factor activity; chromatin binding activity; and identical protein binding activity. Involved in several processes, including negative regulation of cell growth; negative regulation of transcription, DNA-templated; and positive regulation of regulatory T cell differentiation. Acts upstream of or within negative regulation of transcription by RNA polymerase II. Located in Golgi apparatus; nucleolus; and nucleoplasm. Colocalizes with replication fork. Implicated in B-cell lymphoma and diffuse large B-cell lymphoma. Biomarker of diffuse large B-cell lymphoma.

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K15618 BCL6; B-cell lymphoma 6 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923309.2 True 2428 mRNA 0.51 9 19544152 19552693
XM_026923318.2 False 2422 mRNA 0.51 9 19544152 19552693

Neighbor

gene id symbol gene type direction distance location
trnap-ugg_1 NA coding downstream 163640 19380441 ~ 19380512 (-)
im:7152348 NA coding downstream 167988 19372430 ~ 19376164 (-)
zgc:103559 LOC108272278,LOC108427664,LOC107696750,LOC107752646,LOC107552265,LOC105898261,LOC107733245 coding downstream 567215 18970308 ~ 18976937 (-)
agxta agxt,agxta,LOC108427662,LOC107552266,LOC107696749 coding downstream 574701 18964291 ~ 18969451 (-)
dtymk dtymk,LOC107694123,LOC107593168,LOC107696762,LOC107552279 coding downstream 582481 18957773 ~ 18961671 (-)
tbc1d23 tbc1d23,LOC107574489 coding upstream 404024 19956717 ~ 19983297 (-)
tomm70a tomm70 coding upstream 433331 19986024 ~ 19999160 (-)
gfi1ab LOC108271917 coding upstream 473161 20025854 ~ 20032781 (-)
evi5b evi5,LOC108427692 coding upstream 486257 20038950 ~ 20101198 (-)
dipk1ab fam69a,LOC108272054,LOC108427695,LOC103026455,LOC107590645,LOC107659006,LOC107566484 coding upstream 560252 20112945 ~ 20142257 (-)
G30062 NA non-coding downstream 4098 19537921 ~ 19540054 (-)
G29905 NA non-coding downstream 139531 19404408 ~ 19404621 (-)
trnap-cgg_1 NA non-coding downstream 157639 19386442 ~ 19386513 (-)
LOC117596148 NA non-coding downstream 158901 19383314 ~ 19385251 (-)
G29793 NA non-coding downstream 284974 19258950 ~ 19259178 (-)
G30059 NA non-coding upstream 485 19553178 ~ 19555762 (-)
G30070 NA non-coding upstream 13590 19566283 ~ 19566511 (-)
G30071 NA non-coding upstream 13838 19566531 ~ 19566735 (-)
G30072 NA non-coding upstream 14058 19566751 ~ 19567000 (-)
G30085 NA non-coding upstream 30970 19583663 ~ 19584005 (-)
trnap-ugg NA other downstream 726954 18817127 ~ 18817198 (-)
LOC113537624 NA other downstream 727340 18794025 ~ 18816812 (-)
trnag-ucc NA other downstream 727822 18816259 ~ 18816330 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other downstream 1348524 18148228 ~ 18195628 (-)
G29279 NA other downstream 1471243 18070987 ~ 18072909 (-)
glmnb LOC108272089 other upstream 450666 20003359 ~ 20014094 (-)
pex5la pex5l,pex5la,LOC107709207 other upstream 807029 20359722 ~ 20429325 (-)
lepr lepr other upstream 1728671 21281364 ~ 21317823 (-)
raver2 raver2 other upstream 1896853 21449546 ~ 21531428 (-)
ccdc17 ccdc17 other upstream 3019739 22572432 ~ 22581943 (-)

Expression


Co-expression Network