znf644b (LOC108271612)


Basic Information

Item Value
gene id znf644b
gene name LOC108271612
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 17804545 ~ 17840982 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923587.2
TCGAGGTCGCTGTACACAGACGTGATTTTACTGGCCACCCCTCTCGGAGTTTGTAGTTCAACCTGCGGAATTTAAAGGCAAAATGGCGACAGGGTGATGGATGGCAGGCGAATATCCAGCACTTAACCGAGTGTCATGGCGATTTTGTCGTTGCCTACGAATTTCCAGCGTCGGAAAGGCTGGCGATCACATGTCTGGAAGGTGCCACGCTTTTGGAAGCTATTGATGCTGTCTCTGCCATGGCAGCACTGAGAAATAGTGCTGAGAAAGAGGTGGAATCTGCTGAATATTACACTCAGGAGCTGTCAGGCTCTCACACTTCCTCTCCCACCACCTCTAcctgcaacaacaacagcagcagtgtgggACCACAGCAGTGCCAATCTTTGGACAGTCACCAAAGCCTTTTAAATGGAGCACAGCCGAACCCATTTGTCTGTGGCGGTGTCCTGGCTGCCCCCTGCACAGACGATTCATTGCCTTCAGGAGCACTTGTTAATGGATCTGCTTCACACTGTACCTCAGAGGAACCCCACGTCCCCAACAAGGATGCGTCCCCTTTGCCTGGGACAGACACCAACCCTGAGGTGTTGGAGCCTCCCTGCGAGCTTCAATCAAACACTTGGCAAAAACCAGAAGGGCACATTCTGAAAGCACCATCCACACGGACCCTATCTGTGTCGGACAACAGCGACTGTGAGACTCCCTTGGTGGGAGACAATGCAGATAACAGGGCAATCAGCCGGGTGTGGACAAACAACAGCGTCAAAGCAGGATCCTTATGGGATGTTGATTCCGAGTCGGAGTCCTCAGAAAGCTCCTCTGACAACTATGATGGCCTAAACAGAAGCCTCCGAGAGAAGTTTATGTGCTTCCTGTTGAAAGGCAGCATACTTGATGAAGTGGTGAAAGGAAAGATAAAGGTAGGGGGCCTTCAGGCATCCAGTTCAAGGAGGAGGAAACGAAAAACATGCAGAGTAAAAAGGATACCAATGGAAGAAAAAGTTAACGAGAGCTTCAGCTGTGCCTCCCTTATTAACACAGACTTGGATTTTGATTCGTCCATTAGTGAAGAACGTTCCTTGAAGCAGGATTCGGAAAGTTTGAAAGCACACATAGACTCGCATCTGGGGAGTTTCCAAGACAAGAAGAACTTAATTTCAAGTGATAATGTAGGCGGGTGCAATGAAGCAGACACCTACGTGGGTGGCCAACCTATGCCATTAAAGCGACAGCCGGAAACAGGCTTGGAGTCAGAGCACTCATTCTTCCAATGCACAAAGTGCAATGTTAATTTCAAGGAGAAAAGGCATTTGCATAGGCATATGATGTATCATTTAGATTGGCATAATCAGGTAGGGCAAGCGAGCATCCTCCGCCCCTTTATATGCAAAGAGTGTGGGCGCTCATTCTGTGAGCGTTCTTCCCTGCAGAAGCACATGCTGATCCACCAGGTGCGAAGGGAGAGGTTGATGGAGGAGATTAAAGATCTGAATGAACTCAGAAGCCAGGGAGGAGAAGCTCAGCTGCAGTGTCCCCAGTGTGCTTTTGGAACCGACTGCCcacaaacattcattcatcatgcCAAGACCCATGAAAAGGACAAACATTATTACAGTTGTGAAGAATGCAATCTCACAGTGTTGAGCAAGTCAGAAATGGAAGCACACCAACAGATAGCTCACCTCAGTGCATGCCAAGGAAGAGTCATAAAACCCTTGGGCATGCTTCTTTGCAAAATTTGCACATTTAGAACAAAGTATAGAGACATTTTAAGAAAGCATCTGAAACTCGTTCATGACCAGCCACTTTGTGATTATGAGCTTCAGTCACACAATATGGCAACTGACCATACAGGGTCTGTGTCCGAGCAGGACAGGATAACAGACCCAACTGAAGCAGACAACTTATCTCCACCTTCACTGAAGCCAAAGTTTCTCAGAGAGAAGCAGAACAAAAGTGAAGCAGGGCTGTCTGCGTGGTCCAATAGCCTTGCTGACCTTTTTCTGAGAGATAACGGTGcacaaaaatcctgtaaaagTTTGAGCTCCTCACTGATCAAATGGAGCTTTGGCAGCTTAGCAAACAACCTGTCACCGTCTTCCCTGCAATGTGACAAGCCAAGTAAATTATCTCTGCCTACAGAGAGAATAGATGTGACAACAGGTCTCTCCTATGTTGAAGAGGACAATCAAGAATGTGAAAGTGCTGTCTCCAAACAGAACACAAAATATCTCTCCAGCTTTGACATGAATCTTGCGACCAAGTCTGCAATCTCTAGCAAAGCTGTACATCTGAGCCATGATGATGTTAACGCTTCCAAAGATCCCTCGCCTGGAAGCAGTTTAGCAGTACAGAAACAAAAATCTCCctctaaaagaaaaatgtccatTCCATATCACAACACTCCTAAGAAAATTTCAACGATTTTACCAAAACATCAATCAGCAACTCCAGAAAGGCTTGATATTTATTCTTTGCAGAATGGCAACTACAGTAGTGCTAATTTTGATTGTGCCAGTCAGGCAAATGATGCTAAAGGTCCCAGTGAGAGCATAGCACACTTCCTGGATAGCAGCGATGCCAGTGACCCCTTAATCCAGCAGGGAGATTTATTTAAAGATGACGTCCATAACTCTCCTGATCAGTCAGATTTTGATAGCAACatggaagatgatgatgagatcAGCACACTCATAGTGAAAGAAGAGAACGTGGAGAGTGCGGTGAGCGAGGACAATCCAGAGTGTACTGATCCTAATCTCAGTGATTCTTACACCAGCTACTGCGTGTCCCCCGTGTTTGAACCAGATCGGAAGTGCTGTCCATATTGTCCTGCTGTGTTTGAGTCAGGGGTGGGCTTGTCCAATCACATCAGAGGACATCTGCATAGATGTGGGTTAAGCTATGAGGCTCGTCACATGCTGTCACCTGAACAGGTGGCGTCTCAGGACCGGCAGCCTCGTATTCGCAGAAGAGCTCCCTCCATGAGCAACAGAATCAGGAGAGATAAACCTGAGTCTCAGACCGAACACACCTGCCCCCTGTGTCTGGGCTGGTTTGACACTAAAACTGGCCTGTCCAATCATGTGCGGGGTCACCTGAAGCGGATCGGCAAGCCAATCTCAGGTGTCAGCAAGTCTCCCCTGTGCATCCTCACCGAGCTCCTGCAGGACGAGAACGAGCACAGGAACGTTCTCCGAGCGCTTGAGGCCAAACCTCGCCTCTCCAGACCCTTCATTTCCCAGAAGTTTGCAGGAAGCGAGGGCCTGTTTCTTACACCCACTGGTGTCCCAGTGAAGATCCAGCACTCTGCTAACAGGCTGGTCTCTGAGGAGGgtgagaagaggaagaggagggaggagaagaTGAACGAGAATAGAGAAAGCACTTTAGTAGAGCTTCTGAAAAGGCAGAGACTGGACCAGGAGCTGGCAGTCACATGTCACTCTAAGACAGCCAGAGCTCGTTTTATCATTTCTCCATCAAAGAAGGTTTCTCCTGAAGCTCTACCTGACTCCACATGTAGCCAAGGGAAGTTTGACGGAAATAAGAAGATTTGTATCCACTGTAATGCAACTTTCCACAGCGGTGTCAGTCTGTCCAATCATCTTAGGGCTTATGCACGCAGGAAGAGGATCGCTATGCTGGAGGGAACGTCATATGACTGTAATCAGAAACTGCCTCGCTCGAGGTCTGGGCCAAAGAGGAAGGTGTTCCACACTCTACACACCACCTCTGAAGTGATCTACACACTGACATGCAGGTTCTGCGATCTGGTCTTCCAGGGGCCGCAGTGTGTGCAGGAAGACTGGGTGAAGCACCTGCAGAGACACCTCATGCACACTGCTGTCAGAGGCACAGGTGCTGGGATGGTGGAGGTGCCAGCTGTGTGTGAGGAGCCATGTGCTCTGGACTGTGTCACTCAGGGGCTCTAAATCACGTTTACATACAAGCTTTATTCACGTTACCACTCTTCTGCATATGTAAATAGGAAGATAGGAAGAGACGTATACAAATTATTCTATATAGATATATCTCTGGATAAGTGTAGAAATCTATATAAGAAATTATATATCAaatagaaacaaacagaaaactaGAGAGAGATAGCATATTTTCTAATATTGCAcatattttctcttctctttactttttttttaatgttcccCTTATAGGTATGACATTTGTCATAAGTAAAGTCTGGTATTGACACATTCCTATGTTCATATAGTCTTATACAGAGTTGAATATTTGCTTAGAGATAATGTGCTCTGATCTATTTTTAAACCACAATCATACgtggtgcacacacacttacatttatTGCTAAGACCTTTTCTGTAAGTGTAATTCTTGTGTAGGTAGGGATGCGCTGAAATTTTGGCcactgaaaagatttttttttttttttaagattaaataCAACAAAGTATCAAACAGTTTCcctttataaatcatttcactCTTAATTAGTGGTTAAAAAGCCTGGCCCTTATTCATCAAACTTGTATACAGTCAGATCTAATTGTAAAACGAGCGAGCGTACGCAAATTCCACCATtagtttccttgtttttttttttttttttttttggcagatctgtattaaaaaaaagtatatttttgatAAGGGCGTATTTTCTTAGAATTAATGTACTTGAATGAAAGGTTTGACTTCAGAGTGAGATTAAGCTAAACAACCACAAAGATATTTTTCCTAATCTTATTTTGTCAGATTCaacaagggtgccaataattctctgactgtgtgtaatatttacataAGGGACTAATGGGTGGGAGCTTGTTACCACACTGCAGTTGATGATTTGCTCTCGAATCACCAGTTGTTTTGATGTCATATGACGGTTCCATGCAAGAATTTGAATCTGTGCTCGTTTCTACGCAAATTTGATGAAGAAGGGCCGTTGTGTTCTGCATCCTGTGTTCCTCATATTCTTACCTTTTTCTGTGTTGCTATTCGATCTCGATCTGCCATTCTGCGTCCCCCCCATGTCATTTCCTGGTCTGAATCCCTGTGTTTCCTGAATTGGGCCACCTGTATCACTGCTTTATCTGATGTGCactacatacagtcaggtcccgaagtatttggacaatgacagagtttttgtgattttgcctttatacaccaccacctcgaagtgtagactttcagctttattttaaga

Function

NR:

description
PREDICTED: zinc finger protein 644-like

GO: NA

KEGG:

id description
K24374 ZNF644; zinc finger protein 644

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923587.2 True 5194 mRNA 0.45 7 17804545 17840982

Neighbor

gene id symbol gene type direction distance location
tgfbr3 tgfbr3 coding upstream 37265 17666584 ~ 17767280 (+)
gadd45ab gadd45a,gadd45ab,LOC108272203,LOC107670797,LOC107555372,LOC107678351 coding upstream 336387 17465581 ~ 17468158 (+)
znf648 NA coding upstream 366646 17433348 ~ 17437899 (+)
glulb LOC108272186,LOC107733907,LOC107757425,LOC107555380,LOC108437688,LOC107704001,LOC107660462 coding upstream 408406 17392329 ~ 17396139 (+)
LOC117595909 NA coding upstream 619862 17179243 ~ 17184683 (+)
barhl2 barhl2,LOC107749991 coding downstream 77418 17918400 ~ 17922819 (+)
LOC113532395 kyat3,ccbl2,LOC100332215 coding downstream 298073 18139055 ~ 18146917 (+)
LOC113536767 LOC108272161 coding downstream 457393 18298375 ~ 18413955 (+)
dzip1l LOC108271535 coding downstream 759977 18600959 ~ 18614825 (+)
LOC113527312 NA coding downstream 1000455 18841437 ~ 18857162 (+)
G29106 NA non-coding upstream 39772 17694754 ~ 17764773 (+)
G29105 NA non-coding upstream 115810 17683821 ~ 17688735 (+)
G29036 NA non-coding upstream 269194 17530575 ~ 17535351 (+)
G28997 NA non-coding upstream 378222 17423821 ~ 17426323 (+)
G28889 NA non-coding upstream 666695 17100226 ~ 17137850 (+)
G29281 znf326 non-coding downstream 242737 18083719 ~ 18085644 (+)
LOC113536874 NA non-coding downstream 517220 18358202 ~ 18360035 (+)
LOC113530672 NA non-coding downstream 623902 18464884 ~ 18467320 (+)
G29561 sox14,LOC103365676,LOC100695210 non-coding downstream 847671 18688653 ~ 18691007 (+)
G29640 NA non-coding downstream 1209244 19050226 ~ 19050438 (+)
tomm6 tomm6 other upstream 1403434 16398245 ~ 16401111 (+)
mustn1a LOC108272082,LOC108439813 other upstream 1622236 16181171 ~ 16182309 (+)
slc2a11a LOC108271728,LOC108440316 other upstream 1701297 16083289 ~ 16103248 (+)
LOC113534559 LOC108272085 other upstream 2014101 15788626 ~ 15790444 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other upstream 2500051 15278822 ~ 15304494 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other downstream 933788 18774770 ~ 18835721 (+)
trnai-aau NA other downstream 976420 18817402 ~ 18817475 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other downstream 1091701 18932683 ~ 18948737 (+)
LOC113533886 espnl other downstream 1220115 19061097 ~ 19087211 (+)
smx5 lsm2,LSM2,smx5 other downstream 1693363 19534345 ~ 19537197 (+)

Expression


Co-expression Network