dpt (dpt)


Basic Information

Item Value
gene id dpt
gene name dpt
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20172128 ~ 20183294 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923691.2
TGCAAATTACATATAACCTCTGGAGCTAGAAAGGGAACATCTGGAGAGCAAGCCCTCCTCAGAGAGGCTTAAAGTCGAGCAGCTGGACAGAGTGAGTAGTCAGAAGTTGCTCTGTGCTGAAGTGGAAGATGAATTCTGCTCTTGTGCTTCGTACTCTGGCCCAACTGTTGCTGGTGGCTACTATTATTCACACTCAGCCCCACTACTTCCATGGAGAGGAGTGGGTCAACGCATGGCGCCAGGGCTTTAACTTCCAGTGTCCTCACGGCGAGGCGCTGGTGGCCATCAAGAGCTACTTCAGTGAGGAAGAGGGCTCAGACCGTCTGTGGAGCTTTGAATGTCAGCCGACCCCCACCACCCTCGGAGAGCCCAGCGCGTGCTGGTGGGATGATCTCAACCTTGCTGGCATGGAGTGGACTTCCACGTGCAGTGACAACGGTATTGTGGCTGGAGTGCAGAGTCAGTACTTTCCATCTACTCTGGACCGAGAGTGGCGGTTCTACTGCTGCCGCTACAGTAAAAGATGCCCTTATTCCTGCTGGAAGACCTCTGACGTTCCAGAGTACTACAAAGAAGAGGCTGAAATGGTCGTCCCTGCTTATGGCTACTTCATCCGGGGAGCTCAGACCACCTTTAGCGGGGTGCTCAGGGATCGCCAGTGGAAGTACATCCTGTGCAGGATGACAGAACATGATTGTGAATTTCAGAACTTTTAAGTCTGGAATTTGTTAAGCACCAACCTCCAAAAAGTCCTCATAAATAGCCACGGACTTTTatgaaatttaattataaaaggCAATCATACAATTACATATGTAATTCaagtaaaaacaattttattacCTAGGAATTCATATGGTTCATTCCTGTGTgatacattttcacattttatgtaATCCTGCATGGTTTTAAGAGGCTCATTTGATTTACATAATATAGGTATCATCAATACAAACACCTAGACTATTTCTTTACCTACAGTTTGTTTCTTCTATGTTTGAAGTGTAAATCTTTATTCAAATGCCAAATCAAAGCACTGTGAATGGAATGCATTTTTTGACATCTACATCACCTGTTTCGACAAAAGAAAGTTATTGCAGTGTGTCTTATTTTGTATCAGATGTTTACAGCAGCTACATAACAACCAATAAAGCATTTTTTCCCTGAGA

Function

symbol description
dpt Predicted to be involved in collagen fibril organization. Predicted to be located in extracellular region. Is expressed in several structures, including central nervous system; digestive system; eye; fin; and heart. Orthologous to human DPT (dermatopontin).

NR:

description
dermatopontin

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923691.2 True 1169 mRNA 0.44 4 20172128 20183294

Neighbor

gene id symbol gene type direction distance location
zbtb11 zbtb11,LOC106576566 coding downstream 15969 20146385 ~ 20156159 (-)
dipk1ab fam69a,LOC108272054,LOC108427695,LOC103026455,LOC107590645,LOC107659006,LOC107566484 coding downstream 29871 20112945 ~ 20142257 (-)
evi5b evi5,LOC108427692 coding downstream 70930 20038950 ~ 20101198 (-)
gfi1ab LOC108271917 coding downstream 139347 20025854 ~ 20032781 (-)
tomm70a tomm70 coding downstream 172968 19986024 ~ 19999160 (-)
nme7 nme7,LOC107659027,LOC107731836,LOC107732015,LOC107692347,LOC107590639 coding upstream 24461 20207755 ~ 20246008 (-)
LOC113534100 bivm,LOC107548643,LOC104949108 coding upstream 66821 20250115 ~ 20258553 (-)
tmem131 tmem131,LOC107659030 coding upstream 82019 20265313 ~ 20310226 (-)
mrpl47 mrpl47 coding upstream 141564 20324858 ~ 20328459 (-)
lrrc7 lrrc7,LOC107709201 coding upstream 500253 20683547 ~ 20814820 (-)
G30320 NA non-coding downstream 59610 20104252 ~ 20112518 (-)
G30270 NA non-coding downstream 186209 19984675 ~ 19985919 (-)
G30255 NA non-coding downstream 248149 19923763 ~ 19923979 (-)
G30246 NA non-coding downstream 258177 19913653 ~ 19913951 (-)
G30236 NA non-coding downstream 285390 19885468 ~ 19886738 (-)
LOC117599142 NA non-coding upstream 13926 20197220 ~ 20199516 (-)
G30412 NA non-coding upstream 16239 20199533 ~ 20207732 (-)
G30421 NA non-coding upstream 63311 20246605 ~ 20246871 (-)
G30422 NA non-coding upstream 63817 20247111 ~ 20247337 (-)
G30423 NA non-coding upstream 64872 20248166 ~ 20248509 (-)
glmnb LOC108272089 other downstream 158034 20003359 ~ 20014094 (-)
trnap-ugg NA other downstream 1354930 18817127 ~ 18817198 (-)
LOC113537624 NA other downstream 1355316 18794025 ~ 18816812 (-)
trnag-ucc NA other downstream 1355798 18816259 ~ 18816330 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other downstream 1976500 18148228 ~ 18195628 (-)
pex5la pex5l,pex5la,LOC107709207 other upstream 176428 20359722 ~ 20429325 (-)
lepr lepr other upstream 1098070 21281364 ~ 21317823 (-)
raver2 raver2 other upstream 1266252 21449546 ~ 21531428 (-)
ccdc17 ccdc17 other upstream 2389138 22572432 ~ 22581943 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other upstream 2399009 22582303 ~ 22593861 (-)

Expression


Co-expression Network