atp1b1a (atp1b1)


Basic Information

Item Value
gene id atp1b1a
gene name atp1b1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20199525 ~ 20207753 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923907.2
ACGAGCCGGGTACGACTCTGTCCTTTCCGAAAAAGTAGCTGAAAGGAATACAGCTCTGGCGGTCAGGTACCTGAACGAAAGCCACCAAATaaaaaaccccaaataaagttaCACAAAGGGAACTAAAAGAACCGAAAATGCCCGCGAATAAGGAAGGCGACGGCGGATGGAAGACCTTTCTGTGGAATTCTGAAAAGAAGGAATTTTTAGGACGTACCGGCGGCAGTTGGCTTAAAATCTTCATCTTTTATGTAATCTTCTATGGCTGCTTGGCTGGAATTTTCATTGGCACCATCCAGGCGATGCTCTTGACCCTTAGCAACTACAAGCCCACGTACCAGGACAGAGTTGCACCCCCAGGCTTATCACACACCCCACGCTCCGACAAAGCTGAAATCTCCTACAGCCTGCAAGAGGAAGACAGTTATAGGCTATATGTAAAAGCCATGAAAGACCTGCTGGAGCCATACAAAGACGAAAAGCAGTTGGATGACATGAAATATGAAGACTGTGGTGATGCTCCGGCTAAATACATTGAACGTGGGGACTTGGAGAGTGACACAGGCGTAAGAAAGGCCTGCCGCTTCAGGAGGTCCTGGCTGGGAGACTGCTCAGGCGTGGAGGACAACAGCTTTGGCTTTAGGGATGGCAAACCCTGCCTTATTGTCAAGCTCAACAGGATTGTCAATTTCAGACCCAGGCCTCCCAAAACCAATACCTCGCTCCCTGTGGCTGCTGGTGGGAAGGTTCCACAGTTTCTGATTCCTATATACTGCAGCGGCAAGAAAGAAGAAGATACTGAAAAAATCAAAGAGATTAAGTACTTTGGCTTGGGCCAAGGATACCCACTGCAGTACTATCCTTACTATGGCAAGCTGCTACACCCCGATTACCTCCAGCCTCTCGTGGGCATCCAGTTCACCAACATTACCCATAATGAGGAGCTGCGTGTTGAGTGCAAAGTATACGGAGATAATATTGATTACAGCGATAAAGACCGTTATCAGGGACGTTTTGACCTCAAAATCATGGTCAAATCATGACCACAGCTATGAATATAGCGCTTTTACTCTGCCCATTTCAAAACGTAATAATTTagacagatgaaaatgaaaaaataagagagttcaataaaaaaaaaaacaaaaaaaacaaacaaaccacgACTAGTCTTGAACAAACTTTCATAACATACGGGACCTACACTTAATCTGTATGCTTTACACTAGCTTTCTCTGCATATGTCTAGGGTTAGAATGtaaacattacaggaagagtAGCAATAGCAAAGTATTTATTCTACTGTAAATGAGAATATTCCTTGAGCCATGGGACATGTTCAttcattactgtaaattatgATTCCACTACTGATGTAGCGAGCAGTGTTTCTGTCCCTGAGTATTTCTGCCTAGTGTGGTCTCGCTCTATATTTTTGGAGTGTGCAGTGCAGTAGTCGCATACAATGGTCCTTTCCAAGCCATGTTATAATTTCTGTTGTCTTATGTGAGTCATTTTAGTGgtccaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagaaagagagagtgtgtgtgtaagtaaaagTTTGTATAtggttgtgggtgtgtgtgtttgtatttgtacaatataaaaaaagaaaatagtggCATGGTACGCGCTGATATCCCCAGGTCCATATGTGAGTAAATGACTGCACTCCATggaatcttttttctttctctatttgACTTATTTTGTTGATTGTGGGGAAAGTACTTTTACTTCACTTCTTCTCTTATTTGATCATCTTGCAGTGTGGGAGTTTGGGGTTAATGACATTTCTGTATAAggcttttactttctttctcttcaagtGTAGAACTGTGTGTATCTAGTTTGGAGGATCGGCTCCATTCTAGAATGGAGGACTGTTCCTCCCTATGGTCACCGTGGCAACTCAgtgctttaatttaaattttttttttttttttttttttttttttgttttgttttttctttttttttgctggagaCATCACAATGTGGTGTAACTTTCTAATGAATGTTTTAGCCATTTACATGGTGgaagaattttatatttatgcagttgtacaattttttttctgcaggaaAAAGTGTATTGTATGAATCCAGATACCAAAGTCACTGGTCGGAGTTAGAAACTTTTCAGATCCAATGCAGTACCCCATGTAATATGATGTTTCGTCAATGTTAAAAGTGCTTAAAAGTCAATGTTGGACGTAAGAACATCTGTCAGGAGTTGCATCTGctcttgtcattttatttaatacaggtAAGgcctaaacaaataaatgtacaacCAACCTGA

Function

symbol description
atp1b1 Enables ATPase activator activity; ATPase binding activity; and protein-macromolecule adaptor activity. Involved in several processes, including cellular monovalent inorganic cation homeostasis; ion transmembrane transport; and positive regulation of cation transmembrane transport. Located in several cellular components, including T-tubule; apical plasma membrane; and lateral plasma membrane. Part of sodium:potassium-exchanging ATPase complex. Implicated in essential hypertension.

NR:

description
sodium/potassium-transporting ATPase subunit beta-233-like

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005890 sodium cellular_component
GO:0005391 sodium molecular_function

KEGG:

id description
K01540 ATP1B, CD298; sodium/potassium-transporting ATPase subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923907.2 True 2359 mRNA 0.41 6 20199525 20207753

Neighbor

gene id symbol gene type direction distance location
rpl5b LOC103397662,LOC103368809,LOC104921761,LOC101078338,LOC107590646 coding upstream 87006 20104204 ~ 20112519 (+)
LOC113537321 NA coding upstream 89300 20110130 ~ 20110225 (+)
tp63 tp63,LOC107574491,LOC103365775 coding upstream 243491 19884761 ~ 19956034 (+)
tprg1 LOC108272012 coding upstream 315937 19855130 ~ 19883588 (+)
lpp lpp,LOC108271779,LOC108427685,LOC107717931,LOC107590653,LOC107684332,LOC107696776,LOC107752632 coding upstream 395677 19588827 ~ 19803848 (+)
zgc:172121 LOC108271828 coding downstream 37821 20245574 ~ 20249458 (+)
si:ch211-201h21.5 LOC108271508,LOC108427703 coding downstream 51068 20258821 ~ 20265493 (+)
actl6a actl6a coding downstream 107272 20315025 ~ 20324579 (+)
ndufb5 ndufb5,LOC107709185,LOC107659010,LOC107692354 coding downstream 121690 20329443 ~ 20333691 (+)
usp13 usp13,LOC107659032 coding downstream 127878 20335631 ~ 20359651 (+)
G30288 evi5 non-coding upstream 159551 20037735 ~ 20039974 (+)
G30224 NA non-coding upstream 281157 19918145 ~ 19918368 (+)
G30049 NA non-coding upstream 379154 19820142 ~ 19820371 (+)
LOC117596099 NA non-coding upstream 617482 19553052 ~ 19582043 (+)
G30382 nme7,LOC107732015 non-coding downstream 26222 20233975 ~ 20234772 (+)
G30436 NA non-coding downstream 125990 20333743 ~ 20334121 (+)
G30442 NA non-coding downstream 152837 20360590 ~ 20361838 (+)
G30445 pex5l non-coding downstream 160060 20367813 ~ 20368152 (+)
G30448 NA non-coding downstream 164953 20372706 ~ 20373062 (+)
LOC113543059 c11h1orf146 other upstream 179299 20000046 ~ 20020226 (+)
smx5 lsm2,LSM2,smx5 other upstream 662328 19534345 ~ 19537197 (+)
LOC113533886 espnl other upstream 1112314 19061097 ~ 19087211 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other upstream 1250788 18932683 ~ 18948737 (+)
trnai-aau NA other upstream 1382050 18817402 ~ 18817475 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other downstream 329220 20536973 ~ 20658080 (+)
insl5a insl5 other downstream 807085 21014838 ~ 21017867 (+)
tmem69 tmem69 other downstream 2389842 22597595 ~ 22603436 (+)
uhmk1 uhmk1,LOC107692420 other downstream 3425853 23633606 ~ 23653555 (+)
G32684 NA other downstream 3812625 24020378 ~ 24021036 (+)

Expression


Co-expression Network