znf326 (znf326)


Basic Information

Item Value
gene id znf326
gene name znf326
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18083721 ~ 18090316 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924048.2
GGTGTGTTGGATTGGGAAGGAGccagcagtgcattgtgggattcaAGTGAAAGAAAATCTGCTCTTTTACTTTCCTGATTGTGTTGAATATTGCTGTTTATTTAGCTGTTGTTACCGTCTGATGAGTTCAATGCCTCTGCCTTATTGggctttttgatttttttactgTTTGGCTAGCTAAGCAGCATCCTTAACTCTTATAAAGCCCTCCTGatCAATATATACTTGATGCAAGGTTTAAGGATAATGATGTCTGGTGATTCAAGAGAAAAGATCTCTGAAATTGCTCCAAGCTCATTTGAAGAGTCCTATGGTCTTTTTCAAAAATATGCAGATGGAGCGTCATCATTATTGTCAACACCTAAGGATGCAGAGAAGTGTGACAGTTGGCAACAGTTCAGATTGTTCCCATCCAAATCGTCTGAGATAAActATGGTTCTTATGAATTCTTTGGTCTTGGAGCCACAAATGCTGGACGTGATGGAAGTTCCTGTGATGGCACACAAACTGCTGTTCTGATCGATGATGTGCTGGTAGACTGCCGTTTACCTTATCTAGGTTCCTCTAGGAGGTCCAGATCACCATTTTCAGACAGTGATAGCAGTCAGTACACCTCCTTCAGCGATATCTCAGGCTCGTCCACTTTATTTGACTCACCGTACACGAGGCCTAGGCCCATTGGCTCGCGTGGGAGAGGAGGAGATACTGCTGCAGTGTGTAGAGCGAAAAGCAGAGGGATTTTCAGGTCGAGAGGTGCCGTTAACATCCAGAGCTTTTATTCAAACATGGCGACACCAGCATCTCGTGGCACAAAGCGGATGCTGATGGCTCCAGTCCCTCCGAGCAAGTTTGCCAAGAAGCAGAGGGTTGAAATGAGCATCAGGGCAGGCCTGAATTTTGCAAAGgaCAGTCATATTTCCTCTGATGGAAAGGACATGAAGGGAAAAGAAGCTGTGGAGGAGAAGCGTGTTAGAGTCCGAGAGAAACGAAGACGTAGACGAGAGAAGAACTGTGAGAAATATGGAGATAAGCACAGATTAGCTTTTACATGTGCCTTTTGTAAATTTCGCACATTTGAAGACAAAGACATTGAAAAGCATTTTGGAAGCACATATCACCATGAAACACTTGACTACATTCGACGACAGGCCAAGTTTGATGACCGAGTCATTAGCTTTCTCCACGACTGTATGGTGCACAAGTTTCGTAAGACAGTGTCTGCTTTGTGCAAGTTACACAGTCTTTCAGACCAGAAAGCAAACCAGAAAGTCATGGAAGGGGTGACTGAGGATGACTACATGAGGAAGGTGGAGGTGGTGCACTGTATGGCCTGCAACATTTACATTCCTGCTGTTATTACTTCTGTCCAGCAGCATCGCCGTTCCCCTCAACACCTAAAATCCAAAGTGGTGTACAAAGAGCAGCTGAAACGGGAGAGTGTGCTGACGGCAAAAGccataataaataatgacagtGTTAAAATTCGCTATGAGAAATACATCAAGGGAGAAGACCCTTTTGTAATGGATGCTAAAGAAGACACTAGCTCAGATTTGTCTGAACCTGAGGACgataaaatggaaaatgatgtttaaaaatgacCGTCCTCTGATGCTTGATATACACGTGTTCATTCAATCCATGTGATGTCATCCAACATTAGGAACTCTAAAGGCATCAGATAGTGTTCTTCCTTTACAAGTTGAGTTTGTAGCAAATTGTGCAGTTGGAGATGTTAATGATTTTCAGTTCTGCTTTAATGGCAGAATTACAGGTGTTGATACATACAATATTGGGATAGAGATGGTTACTGTGTTAAGTATTGTATACTTGGAgaattatgtatgtgtgtgtgagattgtgtgtgggGCAATGCATGCATGCCATGTAATTTCTCATGTCATACTTTGtatctctcttctttcttcctttgctAGTTTCCAGTCCCTCTACCCTGTATTGGTCACCCACTTGCAAGTGCTGTGCCATTTCTGAGAAACCTTTGAATATGGCTTTCAAATGCTTTGTGTCCCTCATGTTAATCAATGATCTGTTGTATGTCCACTGTACTGAaagtttttttcctcctcatcatcctgactcattcattcactcattacTCTTTTATGTGTATCTTTGCAAAACAGAAATTTAGTATAAAACTGTACAAGCCAGATTTGTTGAATTGCCTGTATAtaagttatatataaaatatagatgaaaaaaataaaaggcttGAA
>XM_034311248.1
GGTGTGTTGGATTGGGAAGGAGccagcagtgcattgtgggattcaAGTGAAAGAAAATCTGCTCTTTTACTTTCCTGATTGTGTTGAATATTGCTGTTTATTTAGCTGTTGTTACCGTCTGATGAGTTCAATGCCTCTGCCTTATTGggctttttgatttttttactgTTTGGCTAGCTAAGCAGCATCCTTAACTCTTATAAAGCCCTCCTGGTATGAACTTGGCCTAGATGTTTGATATGGATGTTCAGTAGCCAGACAGAGTCAAATAATAgtaagtttttgttttctttagatCAATATATACTTGATGCAAGGTTTAAGGATAATGATGTCTGGTGATTCAAGAGAAAAGATCTCTGAAATTGCTCCAAGCTCATTTGAAGAGTCCTATGGTCTTTTTCAAAAATATGCAGATGGAGCGTCATCATTATTGTCAACACCTAAGGATGCAGAGAAGTGTGACAGTTGGCAACAGTTCAGATTGTTCCCATCCAAATCGTCTGAGATAAActATGGTTCTTATGAATTCTTTGGTCTTGGAGCCACAAATGCTGGACGTGATGGAAGTTCCTGTGATGGCACACAAACTGCTGTTCTGATCGATGATGTGCTGGTAGACTGCCGTTTACCTTATCTAGGTTCCTCTAGGAGGTCCAGATCACCATTTTCAGACAGTGATAGCAGTCAGTACACCTCCTTCAGCGATATCTCAGGCTCGTCCACTTTATTTGACTCACCGTACACGAGGCCTAGGCCCATTGGCTCGCGTGGGAGAGGAGGAGATACTGCTGCAGTGTGTAGAGCGAAAAGCAGAGGGATTTTCAGGTCGAGAGGTGCCGTTAACATCCAGAGCTTTTATTCAAACATGGCGACACCAGCATCTCGTGGCACAAAGCGGATGCTGATGGCTCCAGTCCCTCCGAGCAAGTTTGCCAAGAAGCAGAGGGTTGAAATGAGCATCAGGGCAGGCCTGAATTTTGCAAAGgaCAGTCATATTTCCTCTGATGGAAAGGACATGAAGGGAAAAGAAGCTGTGGAGGAGAAGCGTGTTAGAGTCCGAGAGAAACGAAGACGTAGACGAGAGAAGAACTGTGAGAAATATGGAGATAAGCACAGATTAGCTTTTACATGTGCCTTTTGTAAATTTCGCACATTTGAAGACAAAGACATTGAAAAGCATTTTGGAAGCACATATCACCATGAAACACTTGACTACATTCGACGACAGGCCAAGTTTGATGACCGAGTCATTAGCTTTCTCCACGACTGTATGGTGCACAAGTTTCGTAAGACAGTGTCTGCTTTGTGCAAGTTACACAGTCTTTCAGACCAGAAAGCAAACCAGAAAGTCATGGAAGGGGTGACTGAGGATGACTACATGAGGAAGGTGGAGGTGGTGCACTGTATGGCCTGCAACATTTACATTCCTGCTGTTATTACTTCTGTCCAGCAGCATCGCCGTTCCCCTCAACACCTAAAATCCAAAGTGGTGTACAAAGAGCAGCTGAAACGGGAGAGTGTGCTGACGGCAAAAGccataataaataatgacagtGTTAAAATTCGCTATGAGAAATACATCAAGGGAGAAGACCCTTTTGTAATGGATGCTAAAGAAGACACTAGCTCAGATTTGTCTGAACCTGAGGACgataaaatggaaaatgatgtttaaaaatgacCGTCCTCTGATGCTTGATATACACGTGTTCATTCAATCCATGTGATGTCATCCAACATTAGGAACTCTAAAGGCATCAGATAGTGTTCTTCCTTTACAAGTTGAGTTTGTAGCAAATTGTGCAGTTGGAGATGTTAATGATTTTCAGTTCTGCTTTAATGGCAGAATTACAGGTGTTGATACATACAATATTGGGATAGAGATGGTTACTGTGTTAAGTATTGTATACTTGGAgaattatgtatgtgtgtgtgagattgtgtgtgggGCAATGCATGCATGCCATGTAATTTCTCATGTCATACTTTGtatctctcttctttcttcctttgctAGTTTCCAGTCCCTCTACCCTGTATTGGTCACCCACTTGCAAGTGCTGTGCCATTTCTGAGAAACCTTTGAATATGGCTTTCAAATGCTTTGTGTCCCTCATGTTAATCAATGATCTGTTGTATGTCCACTGTACTGAaagtttttttcctcctcatcatcctgactcattcattcactcattacTCTTTTATGTGTATCTTTGCAAAACAGAAATTTAGTATAAAACTGTACAAGCCAGATTTGTTGAATTGCCTGTATAtaagttatatataaaatatagatgaaaaaaataaaaggcttGAA

Function

symbol description
znf326 Predicted to enable RNA polymerase II complex binding activity. Predicted to be involved in regulation of DNA-templated transcription, elongation and regulation of RNA splicing. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be part of DBIRD complex. Predicted to be active in nucleus. Orthologous to human ZNF326 (zinc finger protein 326).

NR:

description
A-kinase anchor protein 8-like

GO:

id name namespace
GO:0032784 regulation of DNA-templated transcription, elongation biological_process
GO:0008380 RNA splicing biological_process
GO:0005681 spliceosomal complex cellular_component
GO:0044609 DBIRD complex cellular_component
GO:0000993 RNA polymerase II complex binding molecular_function

KEGG:

id description
K13204 ZNF326; zinc finger protein 326

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924048.2 False 2241 mRNA 0.42 14 18083721 18090316
XM_034311248.1 True 2323 mRNA 0.41 13 18083721 18090316

Neighbor

gene id symbol gene type direction distance location
LOC117599332 NA coding downstream 288370 17794638 ~ 17795351 (-)
brdt brdt,LOC107564438,LOC106584160 coding downstream 427511 17637150 ~ 17656210 (-)
ephx4 ephx4,LOC107749983,LOC107555389,LOC107564433,LOC107678348,LOC107730701,LOC107675432 coding downstream 451577 17618116 ~ 17632144 (-)
btbd8 LOC108271611 coding downstream 469132 17583651 ~ 17614589 (-)
si:ch73-389b16.1 LOC108271542,LOC108437695 coding downstream 504202 17577391 ~ 17579519 (-)
lrrc8db lrrc8db,LOC108272026,LOC108413222,LOC107730703,LOC107749977,LOC107564626,LOC107675437 coding upstream 3851 18094167 ~ 18106279 (-)
lrrc8c lrrc8c,LOC108272152,LOC108413226,LOC103030093,LOC107749978,LOC107593158,LOC107698887 coding upstream 26089 18116405 ~ 18126912 (-)
lmo4b lmo4,lmo4b,LOC103026253,LOC107593176 coding upstream 358941 18449257 ~ 18464571 (-)
hs2st1b hs2st1b,LOC108271533,LOC108427652,LOC107694133,LOC107679861,LOC107557741,LOC106560611 coding upstream 411222 18501538 ~ 18586226 (-)
trnae-cuc_6 NA coding upstream 486908 18577224 ~ 18577295 (-)
G29237 NA non-coding downstream 240901 17784475 ~ 17842820 (-)
G29223 NA non-coding downstream 369356 17700761 ~ 17714365 (-)
G29213 NA non-coding downstream 445704 17637327 ~ 17638017 (-)
G29196 NA non-coding downstream 572266 17487361 ~ 17511455 (-)
G29176 NA non-coding downstream 615564 17454285 ~ 17468157 (-)
G29439 NA non-coding upstream 362152 18452468 ~ 18452976 (-)
G29541 NA non-coding upstream 524041 18614357 ~ 18614724 (-)
G29542 NA non-coding upstream 524553 18614869 ~ 18615874 (-)
G29551 NA non-coding upstream 543762 18634078 ~ 18634357 (-)
G29612 NA non-coding upstream 793668 18883984 ~ 18887011 (-)
G29279 NA other downstream 10812 18070987 ~ 18072909 (-)
G29263 NA other downstream 134003 17949157 ~ 17949718 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other downstream 554406 17472330 ~ 17529315 (-)
G29158 NA other downstream 803548 17272955 ~ 17280173 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other downstream 1948006 16125830 ~ 16135715 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other upstream 57912 18148228 ~ 18195628 (-)
LOC113537624 NA other upstream 703709 18794025 ~ 18816812 (-)
trnag-ucc NA other upstream 725943 18816259 ~ 18816330 (-)
trnap-ugg NA other upstream 726811 18817127 ~ 18817198 (-)
glmnb LOC108272089 other upstream 1913043 20003359 ~ 20014094 (-)

Expression


Co-expression Network