p4htm (p4htm,LOC108440486)



Basic Information


Item Value
gene id p4htm
gene name p4htm,LOC108440486
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16259432 ~ 16268579 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026924123.2
AGCAATGGCGGCTCATCTCCAGGCAGGGCTTCTCTGCGCCGGGGTCAGCTGTAAAGGTCGTTACGAGCGAGTAACAGGAGCGAAACACTTGACCAGATGTCCTAAACTGCACAATGGGAAGTGTTAAAGGACTAACTTCAGTAATAGCATCATGGCTGGCGTCCGGCTGGATCTGAATCCCGGGAGACGGAGCTGCGCAGTGCCGCTGGTGCCGGAGCTCTGAGAGCGTGTGTGCGGTAGAAACACTGACGAGAGCGCGCTGCTGCTGTGAGAGCAAGCTTTCAGCTCGGCTTAGCCGCTACTCAGACATTAGCTGCTCGAAAATAAACTTATGCTTAACCTCTAATACGTTGACATGTCGTTGACACCCAGTGTGACGAGCTGCTTAGTAATTTTATCTAGAAGGTTAGTTAGGCGGCTACGTTGACCGTGACGAATGTTATGTTTTCATGCGTGAACATTTCGCTGTCATTGCAGCGTCCCATAAACCACAGTCTGTGCTCTACCTGCTCTGTGGAGAATCCGCTGAACCGACCAGCTGACGGActttcactgactcactcagtCGCCGGGAGTCAGGCACAATGACGGAAGCCGAGGGCCGGGTGCACGAGGATGGCAGCGCGCGCTCGTCATTTCATCCGCCGCTGTCACACCGAGAGCGATTCCCGGTGCAGAAGAACAATGTCTGTTCACGATCATACTTTGTAGTGGTCATGGTTTTCTTCCACGTCTACATCCTTAATGTCATTGCCCTGTTACTGTACGTGCATTACAACACCGGCGCTGACGCGGGCGCCTCCTCCAGCAGAGAGTTCAGCAGCCGGAGCCGCGGTCCTGAGGCACCAGCAGAGCAGCCGGCTGCTCACACTCCCCTTCCGCGCATCGAGGGAATACGGGTTGGTCATGTGCAAAAAGTGTCTCTGGTGCCAGGAAAAGTACATGAGATGAAGACCCTCAGTCTGAAGCCTCTGCTCTTTGaaattCCTGGTTTCCTctctgagagagagtgtgcagtgGTGATGCGTCTGGCTCAGCTGAAGGGTCTGGTGGAAAGTCAAGTCATGGTGCCTGAGGGACAGGAAGAGCTCAGCCAGCAGCTAAACCTCAGCGCTGAAGAGATCTTCCATTTGCTTGACCTCAATCAGGATGGCCAGCTGCAGCCACAtgagATTTTAACACATTCCAGAGTGAGAGATGGTATATGGCTGACTCCTGAGAACCTCAGAGAGATCTACGCTGGCCTCAAGGTGGACAAGGATGGTAACGGTCTCTTGAGTGTAGAGGAGTTTGGGCAGCTGAGCAGTGACGCATTCCAGCGCTTCCTACACCAACGGGGGGTGAACAGGAACCAGTTGGTGAGGAACAGCAGACACACATGGCTCTACCAGGGTCAGGGAGCACACCAGGTCCTCAGAGATCTCCGCAACAGGGTCACACGTTTAACAAGGCTTCCATCTGCATTGGTGGAGTTGAGTGAACCTCTTCAGGTGGTGCGTTATGAGCAAGGTGGTCATTACCATGCTCATCATGACAGCGGGCCAGTTTACCCTGAgacaacctgcacacacactcacctcactgTCAACTCCTCCTCGCCGTTCCAGACTTCCTGCAGgtACATTACTGTACTGTTTTACCTGAACACAGTAGAGGAAGGAGGGGAAACCACTTTTCCTGTAGCAGACAACAGAACCTATGATGAAGTGgCTCTCATACAAGACGATGTTGATTTGTTGGACACGAGGAAGCACTGTGATAAAGGAAACCTGAGAGTGAAGCCCACAATGGGCAAAGCAGTGTTCTGGTACAACTATCTGTCTGATGGAAAAGGCTGGGTGGGTGAACAGGATGAGTATGCACTACATGGGGGCTGTGTTGTCACTCGAGGGGTAAAATGGATTGCCAACAACTGGATCAATGTTGACCCAGACTACCAACGGCAAGCCCGGTACGAGCAGCTCATGTCTCAGCAGCCGGAATCTCAGGAgcagcagaacacagacacacaccaggACCTGTAACTACATACATGTATTTCACAAGACTTGCATTACACATGCATATGCAGGtccacaaacacatacacatgaacATGCGTAGCATGCACACACCAAGACAtgcaaaagcacatacagaaaCACTGTGCTGGAACATGCAGATACACAAACAATCATATGTATGGatgcacatacatatatgtatattagaATGACTTATTGGGACACAGGGATACAACTTTAATACTTGCACGTGTGGTACATGGTACTCTGTACAGATACAGAGTATTTCGTTTATTTTACTAATATTTATGAACACTTCTAAAATTATGTTATTGGTAGTGTTATTGCAGCTGCTCTGTatgagcacagagagagacgagagagacaGGTTGAGCACAGCAGCCACTGAAAATAGAGAGACAGGGCTTACTGTCTGGTCATAGAAACTGAAACTAGCTCATTTCTGACacagttttttaaatcttgtgtCAGTGCTCACCAAATCTAGTTTTTTCCCCAATGATTATCACCTAATCATTACGTTGCTAAAAATCtatattggatttttttcataatgcCCAGCTTTATGTAGATACACAAACctgtaaacataaacatatacactGTGCATATTCATGCAGGCATAATGCATGcttattaggggtgtaacgatatgGCATATCGTATCATTCGATATGAGGCTCTTGATTTGATACGTCTGCATATCAAACAATACATTCAATAGACTGCATAATATAGGCTAAATAAGCCTAATCTCCTTCAAGCACGCCCTTTTTCATGAGTCAGTATGCTAGCTGATTGGTGTACTAGCATATTAGCTTGAGAAAAACTTGAGTCACACCAGTGAAAGCTTAGCCATGTTTAATTACGTTacattctaatgcacagcttttgttaTATGCTGCTAAGATTCTGAATGGATCACACAATCACTGTGTCAAGTttcaattattgtacttttataatatCAAATGTTTTAGTCAATTGAAAATGGGAACCTAAGGTACATATACAGACAATGCTTATTATTGCTGTATCAAAAATATCTCATACTgattttgaattttgtgtattgttacacccctaatgctTATATGCATGTAGAAATGAATCATATGATTCATGAACGAAGAGGTGGAGCTGAGCTTTATGTGCTGGAAAATAACAGGATCTCAGCTATTAGTTGTTTGTTCTGTAAAGTTAATTTCTTCAGAACAAGTCATCACCAGCGTTCACTATACCAGTGGTGGCTCgtccataggggcaggtgggGAAAAGCTTAATCATATATATCTGCCATTCAACAAACTTTAATCATGATAGTCCTGATTCACAAtgccatacattttaaattcagctgaaatactaattacctcttttcaGTGACCAacgatattaaaaaaatgttgctatttgatagatacagtc

Function


symbol description
p4htm Enables 2-oxoglutarate-dependent dioxygenase activity. Predicted to be involved in peptidyl-proline hydroxylation to 4-hydroxy-L-proline. Predicted to act upstream of or within regulation of erythrocyte differentiation. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum.

NR:

description
PREDICTED: transmembrane prolyl 4-hydroxylase-like

GO: NA

KEGG:

id description
K06711 PH-4; hypoxia-inducible factor prolyl 4-hydroxylase

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026924123.2 True 3452 mRNA 0.46 9 16259432 16268579

Neighbor


gene id symbol gene type direction distance location
myhb myhb,LOC108271865,LOC108440470,LOC107721187,LOC108254796,LOC107568178,LOC108443910,LOC107667337 coding upstream 1001 16245307 ~ 16258431 (+)
arpc4 arpc4,LOC103358720,LOC107721188,LOC100696600 coding upstream 19490 16234025 ~ 16239942 (+)
LOC113530143 LOC100304607,LOC107667340 coding upstream 26094 16231892 ~ 16233338 (+)
LOC113527941 rab7a,LOC108271868,LOC106518505,LOC101061812,LOC105017315,LOC108254780 coding upstream 28650 16227005 ~ 16230782 (+)
eefsec eefsec,LOC107667374,LOC107584423,LOC107568193 coding upstream 64172 16188335 ~ 16195260 (+)
kbtbd12 kbtbd12,LOC107721181,LOC107712091,LOC107673613,LOC107667403 coding downstream 15374 16283953 ~ 16288642 (+)
akap14 akap14 coding downstream 32689 16301268 ~ 16302456 (+)
c2h1orf159 c11h1orf159 coding downstream 37482 16306061 ~ 16313244 (+)
LOC113527565 NA coding downstream 48529 16317108 ~ 16320572 (+)
si:ch211-157b11.14 LOC108271613 coding downstream 52421 16321000 ~ 16328152 (+)
G28287 NA non-coding upstream 104188 16154986 ~ 16155244 (+)
G28162 NA non-coding upstream 136292 16122896 ~ 16123140 (+)
G28160 NA non-coding upstream 137100 16121977 ~ 16122332 (+)
G28156 NA non-coding upstream 153160 16106043 ~ 16106272 (+)
G28150 NA non-coding upstream 182882 16073222 ~ 16076550 (+)
G28361 NA non-coding downstream 130 16268709 ~ 16269552 (+)
G28402 LOC108271943 non-coding downstream 64872 16333451 ~ 16334652 (+)
G28404 NA non-coding downstream 67613 16336192 ~ 16336694 (+)
G28405 NA non-coding downstream 77066 16345645 ~ 16346086 (+)
G28410 NA non-coding downstream 89503 16358082 ~ 16361347 (+)
mustn1a LOC108272082,LOC108439813 other upstream 77123 16181171 ~ 16182309 (+)
slc2a11a LOC108271728,LOC108440316 other upstream 156184 16083289 ~ 16103248 (+)
LOC113534559 LOC108272085 other upstream 468988 15788626 ~ 15790444 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other upstream 954938 15278822 ~ 15304494 (+)
tshba tshb,LOC108271948 other upstream 2753428 13490161 ~ 13506004 (+)
tomm6 tomm6 other downstream 129666 16398245 ~ 16401111 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other downstream 2506191 18774770 ~ 18835721 (+)
trnai-aau NA other downstream 2548823 18817402 ~ 18817475 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other downstream 2664104 18932683 ~ 18948737 (+)
LOC113533886 espnl other downstream 2792518 19061097 ~ 19087211 (+)

Expression



Co-expression Network