si:dkey-19e4.5 (LOC108272187,LOC103025619,LOC108427613,LOC104930301,LOC103373509)


Basic Information

Item Value
gene id si:dkey-19e4.5
gene name LOC108272187,LOC103025619,LOC108427613,LOC104930301,LOC103373509
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13827423 ~ 13834026 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924315.2
AGTAGAACGCTAACTCAACAGTATGGCGTCTCTGGCTATACGCATTCGCACCAAAATATGCTGTAGCTAgcagaataaaaatattcagtcaAACGCTAGAAGATAATTAGATAAGTCACTTAATTTTAATGTCACCGTATGCTTTTTTGACAGACAGAGTAAAGATTAGGCATAGTCGCCTGTGACTGAGTGAAGCGGTGTGACGGTGCTCGGTGTTTGTGAGAGTTGAGTGTTAGCGTGTGAGCTGTAGCTTCTCAGCGCGGCGCAGAGAGGTGAAGTGATGGAGTCATCTGAGCAATGTCCTCCAGACTCAGCCCATCAGGAGGTGAACCCGGTGTTCCTCCAGCAGCTCAGAGAACTGGATATCCCTGAGGAAGCAGCCAGACAGGCACTCCTACATACAAGGAATGTGTCTGCTGAGGAGGCAGCAATGTACTACTTCAACAAACTGGAAAATGAGGAAGAAGGAGATGAAGATATGATGTTCAAGATGGTCTTTGTTGTGAACATGGAGCTGTCCATGGGTGTGGGGAagGTGGCGGCGCAGGTGGGCCATGCAGCTGTGGCTCTGTACCAGGCCATGCAGGAGAAGAATACTTGGAGAGAGATGGTCTGGAAATGGGACCATGCTGGAGCTAAGAAGATTGTGCTACAGGGCACCAACACGGCACACCTCTTGGAGTTGCAGGCTCTCGCTATGAGTCTGAGCCTCCCTACAAAGCTGATACAGGATGCCGGACTCACCCAGGTGGAGCCGGGCTCTAGCACTGTGCTGGCCATCATGGGAGAGGAAGAAATGGTCAATAATGTTACAGGCAGCCTGAAACTGCTTTGAGCACTGAAGAGAAGCAACAGTGGAAATACAGATGTGTAAGGTGCCACTGTGTGTCCACAGGGGGGCAGAACAGTCCCACAGCAGCAAGGCTCGCtgcacaaaaaacacagcataaTCTATGGCTTTCACATACTTCTACtgacactcttacacacacacaaaataacaataatactatCTGAAGTAGGAGAAGGGCTGCGCATGTGGGTGGGTGCCTGGATGTGTCAGTTCTGGttgatttaacattttacagtgtatcTGCATTCATTCAGTTATGTAAAGCTCTTTGAGTCTATAGAAAAACAAGGAAATGTGTTAAGCCACATTGAACATATCAGTAATTGATCAAATGGGTAGATGATGCCAACTTATGTTctgttgtataaataaatatagccCTTAATCTAGTATATAGTGTTTTGGTGATTGTTGGACCAAATTAGTCATTGTACACTAATTAAATGAATTGTAACGCTATATGTAAAGCATCATCTTCAGATGTAAGAACTCCTGAGATGAGTTTATTGATTATGTGCAAAGGGTCTTCCTTTGTTGTGAGTTGTGATGTATAAATCTGTTTGTCTAGAATTTTTATGTAAGTGTAATGATACCCCTTCGTACCAAGCCTTGTTATGTAGACATAACATGAATGCATGTTATGTAGTTACGTAGACATCACATGAATACATAGACATAACATGAATGCATACTGATGAAGGGGGGTTGGGGGAGGGCAAAATCTCAAAGCCATACGTTTATTGTGGAGTGCCATTGTTAACAATTTCTGTCACTTTTtgactgttatttatttttttttatgcatctgCTTGTTGAGTCTACTATATATTGCCTGTCAGTTCTAGGACTAAGGAGGTTGGCTATTTGCAATAATATTGACATGCTATTTTGTCTGTCTCCATTAAACTTTCACTGTAGTGTTACAAGATCAGAGCTTTGTATTTAGACTACGACAAATTGTTTTTATGAGAATTGCAAATTAGTATTGTCTAGGATGTTGAATATGGCTACACTGTGGCTTAAAGCTTTAGATCCTCTGCCTACaccatgtcatttttttctccatcacaGTTCTAGCCGAATTAACTGGAATTGTATTGACATGTAGTTGGTCAATAATAATCACAAGCTTTAGAAAAGGTGATCGATAA

Function

NR:

description
PREDICTED: probable peptidyl-tRNA hydrolase 2

GO: NA

KEGG:

id description
K04794 PTH2; peptidyl-tRNA hydrolase, PTH2 family

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924315.2 True 2004 mRNA 0.42 7 13827423 13834026

Neighbor

gene id symbol gene type direction distance location
plxnb1b plxnb1,LOC108271959 coding upstream 5940 13746014 ~ 13821483 (+)
prkag1 prkag1,LOC107582314,LOC107686771,LOC107752861,LOC107554882,LOC107708574 coding upstream 123095 13695082 ~ 13704328 (+)
pa2g4a pa2g4a,pa2g4,LOC108272117,LOC108427609,LOC107713111,LOC107678215,LOC107581315,LOC107551923 coding upstream 132875 13686081 ~ 13694548 (+)
erbb3a LOC108271615,LOC108427608 coding upstream 141886 13661845 ~ 13685537 (+)
arf3b arf3,ARF3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878 coding upstream 168751 13651393 ~ 13658672 (+)
setd5 setd5 coding downstream 2521 13836547 ~ 13864669 (+)
mtmr14 mtmr14,LOC106583633 coding downstream 78038 13912064 ~ 13930791 (+)
LOC113533199 cpne9,LOC106583634,LOC106565248,LOC102776939,LOC106947665,LOC100694516,LOC103466873,LOC106915448 coding downstream 97114 13931140 ~ 14018732 (+)
si:dkey-156n14.3 zxdc coding downstream 188227 14022253 ~ 14030692 (+)
LOC113533298 LOC108272123 coding downstream 214709 14048735 ~ 14058514 (+)
G26873 NA non-coding upstream 2197 13822384 ~ 13825226 (+)
G26848 NA non-coding upstream 197957 13626481 ~ 13629466 (+)
G26749 NA non-coding upstream 310020 13434904 ~ 13517403 (+)
LOC113533310 NA non-coding upstream 452927 13351846 ~ 13374496 (+)
G26266 NA non-coding upstream 919329 12855396 ~ 12908094 (+)
G26875 NA non-coding downstream 213 13834239 ~ 13836347 (+)
G26884 NA non-coding downstream 39289 13873315 ~ 13873523 (+)
G26921 NA non-coding downstream 166905 14000931 ~ 14054690 (+)
G27164 NA non-coding downstream 335754 14169780 ~ 14172077 (+)
G27262 NA non-coding downstream 636064 14470090 ~ 14470420 (+)
tshba tshb,LOC108271948 other upstream 321419 13490161 ~ 13506004 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other upstream 495246 13265788 ~ 13332177 (+)
si:ch211-286o17.1 NA other upstream 1076146 12728993 ~ 12751277 (+)
G25908 LOC108272198 other upstream 1299932 12526170 ~ 12527491 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other upstream 1613766 12204441 ~ 12213657 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other downstream 1444796 15278822 ~ 15304494 (+)
LOC113534559 LOC108272085 other downstream 1954600 15788626 ~ 15790444 (+)
slc2a11a LOC108271728,LOC108440316 other downstream 2249263 16083289 ~ 16103248 (+)
mustn1a LOC108272082,LOC108439813 other downstream 2347145 16181171 ~ 16182309 (+)
tomm6 tomm6 other downstream 2564219 16398245 ~ 16401111 (+)

Expression


Co-expression Network