ppil1 (ppil1,LOC107667353,LOC107673584)


Basic Information

Item Value
gene id ppil1
gene name ppil1,LOC107667353,LOC107673584
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16363671 ~ 16365937 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924529.2
GCTAAAGGCGGTTAAAACCTTGTTCTTCCTGTCACACTTCCggtccactagatggcagcacACAGACACCAGTCTTCTCTTTCTGACCTGATACGCAAAGAAAAAGCCGTACTCAAGCCATTTCCTTAGCACGTTTTGTGGTTATTTTGAGGTTAATTCGGTGTGTTTTTGTGAACGCGTTGTTGTGTGTTCAGTTTTTAAGACCCGGAAATGTCAGGAATCCCGCCGGACTCATGGCCCCCTACAGTGTCGCTCGAGACCTCTATGGGAACCATCGTGTTGGAGTTGTACTGGAAACACGCCCCTAAAACCTGCAAGAACTTCGCTGAGCTGGGCAGACGAGGATATTACAACAACACCAAGTTTCATCGCATCATTAAAGACTTCATGGTGCAAGGTGGCGACCCAACAGGAACTGGCCGTGGCGGTGCATCTATATATGGAAAACAGTTTGAGGATGAACTTCATCCTGAGCTGAAATTCACAGGTGCTGGAATCCTTGCTATGGCTAACGCAGGCCCGGACACAAACGGGAGTCAGTTCTTTTTGACTCTGGCCCCTACACAGTGGCTTGATGGCAAGCACAGTATATTTGGCAGAGTTTGCCAAGGCATCAGTGTTCTCAATCGAATTGGCATGGTGGAGACCAACAGTCAAGATCGCCCTGTGGAGGAGATAAAAATACTCCGGGTGACTCTACCTAACTGACACGTGTCAAAGTTCACTTATAattttgtacagttttttttttttttttaacaataaaccaatatttt

Function

symbol description
ppil1 Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein peptidyl-prolyl isomerization. Predicted to act upstream of or within protein folding. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia. Orthologous to human PPIL1 (peptidylprolyl isomerase like 1).

NR:

description
PREDICTED: peptidyl-prolyl cis-trans isomerase-like 1

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K12733 PPIL1; peptidyl-prolyl cis-trans isomerase-like 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924529.2 True 776 mRNA 0.46 5 16363671 16365937

Neighbor

gene id symbol gene type direction distance location
si:ch211-157b11.14 LOC108271613 coding upstream 35519 16321000 ~ 16328152 (+)
LOC113527565 NA coding upstream 43099 16317108 ~ 16320572 (+)
c2h1orf159 c11h1orf159 coding upstream 50427 16306061 ~ 16313244 (+)
akap14 akap14 coding upstream 61215 16301268 ~ 16302456 (+)
kbtbd12 kbtbd12,LOC107721181,LOC107712091,LOC107673613,LOC107667403 coding upstream 75029 16283953 ~ 16288642 (+)
tspo tspo,LOC107721166,LOC107568174,LOC107667354 coding downstream 25475 16391412 ~ 16394007 (+)
LOC113544464 LOC100335019,LOC108438034,LOC103026398,LOC100706528,LOC101066223 coding downstream 94464 16460401 ~ 16463536 (+)
lrrc41 lrrc41 coding downstream 99006 16464943 ~ 16475146 (+)
hyi hyi coding downstream 688195 17054132 ~ 17066099 (+)
LOC117595909 NA coding downstream 813306 17179243 ~ 17184683 (+)
G28410 NA non-coding upstream 2324 16358082 ~ 16361347 (+)
G28405 NA non-coding upstream 17585 16345645 ~ 16346086 (+)
G28404 NA non-coding upstream 26977 16336192 ~ 16336694 (+)
G28402 LOC108271943 non-coding upstream 29019 16333451 ~ 16334652 (+)
G28361 NA non-coding upstream 94119 16268709 ~ 16269552 (+)
G28446 NA non-coding downstream 70184 16436121 ~ 16440771 (+)
LOC117599087 NA non-coding downstream 123141 16489078 ~ 16494312 (+)
G28574 NA non-coding downstream 167938 16533875 ~ 16535345 (+)
G28676 ptprf non-coding downstream 363277 16729214 ~ 16731205 (+)
LOC113524191 NA non-coding downstream 476307 16842244 ~ 16843385 (+)
mustn1a LOC108272082,LOC108439813 other upstream 181362 16181171 ~ 16182309 (+)
slc2a11a LOC108271728,LOC108440316 other upstream 260423 16083289 ~ 16103248 (+)
LOC113534559 LOC108272085 other upstream 573227 15788626 ~ 15790444 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other upstream 1059177 15278822 ~ 15304494 (+)
tshba tshb,LOC108271948 other upstream 2857667 13490161 ~ 13506004 (+)
tomm6 tomm6 other downstream 32308 16398245 ~ 16401111 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other downstream 2408833 18774770 ~ 18835721 (+)
trnai-aau NA other downstream 2451465 18817402 ~ 18817475 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other downstream 2566746 18932683 ~ 18948737 (+)
LOC113533886 espnl other downstream 2695160 19061097 ~ 19087211 (+)

Expression


Co-expression Network