cldn34a (cldn34)


Basic Information

Item Value
gene id cldn34a
gene name cldn34
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20876945 ~ 20880467 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924733.2
ATTTACACTTCAGCATCAACTGAGAcgtggtgtgtgtttgaagcCGGGTTATGAATGTGCGGTTTTTGTCACTTCAGACCTTGACATTTGCTGAGGTAGTCTAATGAAAGAATGTTCCAGAAGGCTACATGCAGCAATTTTTACAGACGTCACTGACTGAGTTCAGGTCTATGTACCTAAATGATGAACTACCTGGCCCACACGGCCCACTGGCAGTTCTTTGGTTTGGTGCTGGCAGTACTGGGATTGATCCTGACAGCTGCCACCAGTGGAATGGATGACTGGAGAGTGTGGTATGTAGACGACATGTCCGTCATCACCTCTGGGATGGCCTGGTTTGGCATCTGGAGGGCCTGTTTTTATAGCAGCGTCCTTGACACGGCTGAGTTTTGCCGAAGCATAAGCATCACAGACTCGTTCATTCCTCCAGAGATTGCTGCAGGACAGGTGATGTGTATGATGGCCATCCCTGTGGGAATCGCTGCAAACCTGGTTGCAGGATACGCCGTGAGACGTGCTTACTTCAACATCGATGGAGGGCACATCAGACTTTTCTTCTCATCAGCAGGAGCTTTGTATTTCCTCACCGCAACGTGCTCGCTGATTCCTGTTATTTGGAACATGAGTTCAGTGCTGGAGAATCGTACGATTGATTTCCCGCCAGAGTTTCTTCTACCTCCTGCACCGTATAAACAGGAGCTGGGCCTGGGGATCATAATGGGAAtcggctcctctgtcctgcttATTATAAGTGGGCTGCTCTTCCTGTCCTACAGGCAAACACGTAAACCCAGGAAACACAAGACTGAGGGAACCAAGGAGAAAAACCGAGGCAGCACAAACCTCAGAACTGGTGCTCTGGACACTGATAGTATGAGAGAAGGGAAAGAGAACCCAGCATTCAAGGTAGAAGACATGCTGTAATGTAGATTTCTGGACATTTAGAAAATAATCTGCAGCAGCTTATCTCCTCTGAGTCATTTCAAATCTATGGCATGTAATGctgtttaaacatgtttaacttACActtctcaaccaatcagatttcactCCACTCTGTCGCAAAATTTATATGGCACTAGACATGAGGTGTGCTCTTTACCTTTCAACATCTCCCACTTCTGTTCATGGTCTATCCTAAATCTAGATCCAATATACAGTAAACAGGATTATGGGTTATATATGCAATGCACACTAAGTATATTCAGCATTTCTTGCATCAGATTTATGTTATTAATCCACTTGTTTTTAGcagttttactgtttttttgcattttgttttgtctgtgaaGTAAACAAGCGTGGCTTTTAGCACTTTCATGGCTTGGGGCTGCTGCTGTGCTGTAAAATCACAGGATGTGCCATTACAGTTGAGTGTAGAGGTGTTTAGTTTAACAGAACTAAAACATCCTTTCCGGTTTTTCCTTTGAATGACAATGGTGATTGAACCAAAATACAGTAATGAAAAAGGACAAAACATGTTGGACTAATTGTGTTTTACAATGTACAGTGAACAGAACATTCTAAAAGGATGTGTTTAAAAGGATGCATTTCTAATAAGCATTGAATTAAAGTGTATTATACTGTATCACAGTACTGTTGAACTTTCTAATctaactggtcagaaggtgttaattcattttctacagcagctcttacagtagTTTTGGCTGCAGGCCAAATCACAGGCTTGTACAGCTGTTGGTGAAATTTCCTGAAAGTTTGTGGTGAAATCTTCTGAAAGTTT
>XM_034311515.1
ATTTACACTTCAGCATCAACTGAGAcgtggtgtgtgtttgaagcCGGGTTATGAATGTGCGGTTTTTGTCACTTCAGACCTTGACATTTGCTGAGGTAGTCTAATGAAAGAATGTTCCAGAAGGCTACATGCAGCAATTTTTACAGACGTCACTGACTGAGTTCAGGTCTATGTACCTAAATGATGAACTACCTGGCCCACACGGCCCACTGGCAGTTCTTTGGTTTGGTGCTGGCAGTACTGGGATTGATCCTGACAGCTGCCACCAGTGGAATGGATGACTGGAGAGTGTGGTATGTAGACGACATGTCCGTCATCACCTCTGGGATGGCCTGGTTTGGCATCTGGAGGGCCTGTTTTTATAGCAGCGTCCTTGACACGGCTGAGTTTTGCCGAAGCATAAGCATCACAGACTCGTTCATTCCTCCAGAGATTGCTGCAGGACAGGTGATGTGTATGATGGCCATCCCTGTGGGAATCGCTGCAAACCTGGTTGCAGGATACGCCGTGAGACGTGCTTACTTCAACATCGATGGAGGGCACATCAGACTTTTCTTCTCATCAGCAGGAGCTTTGTATTTCCTCACCGCAACGTGCTCGCTGATTCCTGTTATTTGGAACATGAGTTCAGTGCTGGAGAATCGTACGATTGATTTCCCGCCAGAGTTTCTTCTACCTCCTGCACCGTATAAACAGGAGCTGGGCCTGGGGATCATAATGGGAAtcggctcctctgtcctgcttATTATAAGTGGGCTGCTCTTCCTGTCCTACAGGCAAACACGTAAACCCAGGAAACACAAGACTGAGGGAACCAAGGAGAAAAACCGAGGCAGCACAAACCTCAGAACTGGTGCTCTGGACACTGATAGTATGAGAGAAGGGAAAGAGAACCCAGCATTCAAGagagagagagagagagagagagagagagaaagaaatagagaggctggtaaggaaATGTTTGTAGCTGCTCTCACACACGTGATAACAGTAACTAAGTTGATTAATGGATTTTtctacaacaataaatgtaactataaacagattaaaaaaagtacactatgtcattctttaataaattaagaatGGCCATCATAGGtcaattactgtggtataagaggaaaaagaaaaaactatgtGACTTGctataattggaaaataatcagctttggaaTGGGAAGAGTTAATCCACTTATTGTAGAGCCTCATCATACCACtgtactgttgattattttcctataaaagcatacTCCATTGTGTTTTATCTCTTACTTACAATCAGGTGAGGAGTAGGGTTTATGCAAACAGCCAACAGAGCTAAGATCATGTATTACACATTGATGGAAATGTACTGTAAATCACGGCATGGCAAAATGGTGAgaataatattgataatatactgtaatacagGTTCACACTGCTTAATAgagaaatgctttcattttacaattaaagcaaaatgtgttcatttctgTATCACGTATCATTGGCAGAAAAGACTTATTTTGATATCTTTTTCACACCAACACTGACAAATGAAgaaaattacagtatatttggtatttaaaaaaagtgcttcacacagaaacagatatACTGAAAACTTGTTTCCATGAGTCCTGAGATCTCCATATGCTGTAATAACACTCTCATTGTCTGTTAATATTGAAACTCCTTATTATAACACAGAAAATACACTGATACTGTAGGTAGGTTGCCCCACCTGCTACAACCTAAATTCCATTCCTATATTAGTCTTCATTCTGTACGTAACAATCCTTT

Function

symbol description
cldn34 Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane.

NR:

description
PREDICTED: claudin-34

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924733.2 False 1747 mRNA 0.43 2 20876945 20879525
XM_034311515.1 True 1785 mRNA 0.41 3 20876945 20880467

Neighbor

gene id symbol gene type direction distance location
shroom2a shroom2 coding upstream 5249 20824340 ~ 20871696 (+)
lrrc40 lrrc40,LOC107709203,LOC107590628 coding upstream 193454 20674401 ~ 20683491 (+)
meltf meltf coding upstream 205199 20658819 ~ 20671746 (+)
ptmaa NA coding upstream 360390 20512789 ~ 20516555 (+)
phb2b LOC108427714,LOC107692360,LOC102296991,LOC102211951 coding upstream 396871 20473271 ~ 20480074 (+)
wwc3 wwc3 coding downstream 13556 20894023 ~ 20948637 (+)
ttc22 ttc22 coding downstream 102065 20982532 ~ 20988867 (+)
wdr78 wdr78 coding downstream 119016 20999483 ~ 21011730 (+)
jak1 jak1,LOC107739023,LOC107556544,LOC107659055 coding downstream 528287 21408754 ~ 21448083 (+)
si:dkey-148h10.5 NA coding downstream 903325 21783792 ~ 21795509 (+)
G30721 NA non-coding upstream 25269 20848491 ~ 20851676 (+)
LOC117599214 NA non-coding upstream 95037 20770555 ~ 20781908 (+)
G30620 NA non-coding upstream 196175 20680400 ~ 20680770 (+)
G30545 NA non-coding upstream 370299 20506323 ~ 20506646 (+)
G30543 NA non-coding upstream 371308 20505039 ~ 20505637 (+)
G30747 NA non-coding downstream 82965 20963432 ~ 20963641 (+)
G30791 NA non-coding downstream 213147 21093614 ~ 21093816 (+)
G31260 NA non-coding downstream 504539 21385006 ~ 21385342 (+)
LOC113526220 NA non-coding downstream 521775 21402242 ~ 21406386 (+)
G31384 NA non-coding downstream 728766 21609233 ~ 21612878 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other upstream 218865 20536973 ~ 20658080 (+)
LOC113543059 c11h1orf146 other upstream 856719 20000046 ~ 20020226 (+)
smx5 lsm2,LSM2,smx5 other upstream 1339748 19534345 ~ 19537197 (+)
LOC113533886 espnl other upstream 1789734 19061097 ~ 19087211 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other upstream 1928208 18932683 ~ 18948737 (+)
insl5a insl5 other downstream 134371 21014838 ~ 21017867 (+)
tmem69 tmem69 other downstream 1717128 22597595 ~ 22603436 (+)
uhmk1 uhmk1,LOC107692420 other downstream 2753139 23633606 ~ 23653555 (+)
G32684 NA other downstream 3139911 24020378 ~ 24021036 (+)
LOC117598985 NA other downstream 3772523 24652990 ~ 24656248 (+)

Expression


Co-expression Network