zgc:172271 (LOC108271876)


Basic Information

Item Value
gene id zgc:172271
gene name LOC108271876
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16157525 ~ 16166031 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925394.2
tgCAGTGAATTAAGCAGCATGATGAAGGGTGTGTGTGGAATAATCGTCATCCTCCTTTTCTCCACTGCTGTGTGGGCAAAAAAGATGCGCTGGTGTATAGTGTCGGAGCCCGAGCGAAGGAAATGTGCAGACCTGGCTAAAGCACTAGGAGCTGCTTTTCCTCCTGCAGCCACATTGTACAGCCAGCTGTCCTGTGTGAGAGCCTTCAGCACTTCTGACTGCCTCAGTAAGATACGGGACAATAAAGCCGACCTCGTGACTCTGGACGCTGGAGAGGTCTACTCTGCAGTAAAGCAGTTTGGTCTTGCAGCAGTCGCCAAAGAGATCTACAGTGATGGCACCTGTGTCCTGGCTGTGGCAGTAGTGAGAAACACAAGCTCAGTAGACATCCATTCTCTTAAGGGAACTACGAGCTGTCACAGTGGAGCTCGCTGGACTTCAGGCTGGAATTTGCCTTTAGGGCAGCTGCTTTCCCACAACCTCCTGCCCTGGGCTGAAGGACAGCCCCTCAGTCAGGCTGTCAGTGCCTTCTTCAATGCCAGCTGTGTGCCTGGAGCTGGTACCATGGCATTCAGCAGCCTGTGTTCCAGGTGCCAGGGTCAGAGGTCATATGTCCCACAGAGGAACTTTTACTGCGAGACATCTCATAATGAACCATTCTACCATAACCAAGGGGCACTCAGatgcctgaagtctggagcagGAGATGTGGCCTTTGTGGATCATACAGCCCTGGACAGCATAGATGACAGCGTGAAGGATGAGTACAGGTTATTGTGCACAGATGGCACTCGAGCTCCACTGAGCAGTTTCAGAAAGTGTAATTTTGGTCGTGGCCCTGGTGGAGCTGTGGTTACACGCATAAACAACCAAAACCTTGCTCGCAAGTTCCTGTCAGCAGTTCAGACAGCGTTTGGCTGGAAGGGAAGAGAGAATCATCGTTTCCAGCTTTTTGATTCATCAGCTTACGGTGTGGCTGATTTGCTGTTCAGAGACGTCACTGATAAACTGTCCATACTGCAACAAGGCATAGACATCAGTCAGGTTCTGGGACTGGACTATGTTGCTTTGCTCAAGGGGTTAAGACATGAAGgtagCTCTCTGGAGGACAGTGTGGTGAGATGGTGCTGTATAAGTCATGCTGAACAGGAGAAATGTGAGCAGTGGGCTCTCAGCATAAAGTCCGATCCTCTTGTATGCGTGAGCGCTTCGTCTATGAGTGACTGCATTGAGAAGATCAAGAGGGATAAAGTGGATGCTGTGTCCCTGGATGCTACGCATGCCTTTATAGCAGGGAAATGTGGCCTTGTACCTGTAGTGACTGAGTATTATGGGCATAAGTGTGAATTCACTGGAGGAGAACCTTTAGAGGCTAAAGACTTGTTACCAGTGTACGGTGTGGCAGTGGCAAGGCGCTCCAGTAAAAGTGTGTATATTGGGAATCTTGGTGGTCGACGCTCCTGCCATGGTCTCGTGTACAGTCCTGCTGGCTGGGTTCTGCCTGTCCAACACTCACTGAGTTCAGAACATAACAACAGCATCCCCTGTGAGCCAAACAAAGTGTACTCTGAGGTGTTTTGGAAGGGCTGTATGCCAGGCACTGAAGGCAAtctgtgtaaggtgtgtgtaggtgggacAGAGGAAGCTGCCACCAAACGATGCTCCAACAACCACAATGAGCGCTACTATGGAAATATGGGGGCTCTGAGGTGTCTGGTTGGAGACCCAAATGGGAAAAGCTACGGAGATGTGGCATTTATGGAGCATCACAACCTAGAGAGCAACATTGAATTTCTGAACAGCAGTGGCTGGGCCAAGGGCTGGGCTGCCAGGGATTTTGAATTGTTGTGTGCGGATGGACAGCGGGCTTCACTGACAGAGTGGAAGAACTGTAACCTGGGAGCCATCCCACCCAACATTGTTATGACACGACCTGTAATGGCTGCTCGTATCTACGACTTCCTCATGAAGTCACAGGAGACACGTCCAGATTCTGAGTTCCATCTGTTTGAGTCTCAGCAGTATGGTGAAAGTGATCTGCTCTTTAAAGATGCCACACGGTGTCTGGTCCACACTAGCCAAATGGACTATCGCACCATACTAGGAGAGGATTTCTTTTCACAAGTGGAAAGCATCTTTAACTGCACACATTCAGACATTCTGCAGTTTTGCAACCAAGATGTGTGCAGCATATTCTGAACGACATAACCTGACGACATCATACGGCATCAGGAGTGCTTCTTTTTATAATCTCTACTGCTCAATAAATTACTCAGTAAAATCTTCTCATTACTGCTGGTGCATATTATGCAAgcaataaaccatttcagggcatgctgttataggaaactagtcaacgctggggtggtgtgatgcagccagaCTCAAAGCAGAGGACTTTAACCCCGAATTGAactattttccagtaacagctcATCCCAAAGTATTTCATTCCTCACATAATCTTATTCATTACACTGTTTCATTGCTCTTAACTGCAGCAAATTGCCAACTACTGcactatttaatttattaattaaaaacacgATGggcttttttaatgaattatagttaatgatgtggaacaacaagacaagttagttcctgttatcacttatgctatagcagctataaacaataatTCCATCACTATCATTGCTTTATTCTCTCAAAATACGcagcatgttactgagaaactagaAAACGCaaaaaagtcctctgtcctgaaaacttttctCATGGTGGAAGACTTACTGAAtcttacaaaatgctgacact

Function

NR:

description
protein SFI1 homolog isoform X3

GO:

id name namespace
GO:0006879 cellular iron ion homeostasis biological_process
GO:0006826 iron ion transport biological_process
GO:0005576 extracellular region cellular_component
GO:0008199 ferric iron binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925394.2 True 2778 mRNA 0.47 17 16157525 16166031

Neighbor

gene id symbol gene type direction distance location
sfi1 sfi1 coding upstream 1445 16139483 ~ 16156080 (+)
hdhd3 hdhd3 coding upstream 86485 16068404 ~ 16071040 (+)
trub2 trub2 coding upstream 90746 16063124 ~ 16066779 (+)
rab44 NA coding upstream 108727 16035453 ~ 16048798 (+)
LOC113527532 slc6a13,LOC108271735,LOC108413697,LOC107584422 coding upstream 146686 15993019 ~ 16010839 (+)
sirt4 sirt4 coding downstream 698 16166729 ~ 16171224 (+)
rft1 rft1,LOC107721169,LOC107568194,LOC107584424,LOC107673548 coding downstream 9168 16175199 ~ 16180134 (+)
eefsec eefsec,LOC107667374,LOC107584423,LOC107568193 coding downstream 22304 16188335 ~ 16195260 (+)
LOC113527941 rab7a,LOC108271868,LOC106518505,LOC101061812,LOC105017315,LOC108254780 coding downstream 60974 16227005 ~ 16230782 (+)
LOC113530143 LOC100304607,LOC107667340 coding downstream 65861 16231892 ~ 16233338 (+)
G28287 NA non-coding upstream 2281 16154986 ~ 16155244 (+)
G28162 NA non-coding upstream 34385 16122896 ~ 16123140 (+)
G28160 NA non-coding upstream 35193 16121977 ~ 16122332 (+)
G28156 NA non-coding upstream 51253 16106043 ~ 16106272 (+)
G28150 NA non-coding upstream 80975 16073222 ~ 16076550 (+)
G28361 NA non-coding downstream 102678 16268709 ~ 16269552 (+)
G28402 LOC108271943 non-coding downstream 167420 16333451 ~ 16334652 (+)
G28404 NA non-coding downstream 170161 16336192 ~ 16336694 (+)
G28405 NA non-coding downstream 179614 16345645 ~ 16346086 (+)
G28410 NA non-coding downstream 192051 16358082 ~ 16361347 (+)
slc2a11a LOC108271728,LOC108440316 other upstream 54277 16083289 ~ 16103248 (+)
LOC113534559 LOC108272085 other upstream 367081 15788626 ~ 15790444 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other upstream 853031 15278822 ~ 15304494 (+)
tshba tshb,LOC108271948 other upstream 2651521 13490161 ~ 13506004 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other upstream 2825348 13265788 ~ 13332177 (+)
mustn1a LOC108272082,LOC108439813 other downstream 15140 16181171 ~ 16182309 (+)
tomm6 tomm6 other downstream 232214 16398245 ~ 16401111 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other downstream 2608739 18774770 ~ 18835721 (+)
trnai-aau NA other downstream 2651371 18817402 ~ 18817475 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other downstream 2766652 18932683 ~ 18948737 (+)

Expression


Co-expression Network