ddit3 (ddit3)


Basic Information

Item Value
gene id ddit3
gene name ddit3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 11517494 ~ 11520910 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925428.2
ATATAAACAGCCCCGGGAGTTTCCGAAATTCATACTCGGTGACTTCAACTGAACAATGGTTAACATGAACTATCACCAATCtcaacaaaaatatatacacaaccCGAGTCCAAGACAGTCGAGAAAACGgcataataaaagaaaaaggAATTACTGGGACACTATATCGCCGACAACTCACAACCACACTTGATTAAGAAGAAACGCTTTTAAGGTCTGGTGTGCTGGGTGTAGGAGCGTGTTGAGTCGTCGTGTCTGTGCGTAGCAGCTGATTGGTTGAGATGACTGCGGAGTGGATGTACCCCCCCGGCGTGGCGCCGCTGTGTGGTGCAGAGTTGGAGGCGTGGTATGAAGACTTGCAAGATATATTGGGATCCGATGCAGGTGGGGCCAAGCACACACGCCCCCCGCCCTGCACCGAGAAAGAGCCGGAGTTTCTGGATGTCTTGGAGAGCTGCTCACTCACCTGGCTGACGGAGGGGCAGGTGTGGGGGGAGGGGGTGCAGCGTGTGATGGAGGAGCCTTCACCACCTCCGCTGCTCCTCAGCCAGCCAGCGGCACAGGAGGAGCAGCGTGGTGCACGAGAGACCGCGAGCTCTGGTGCAGGAGACCTCCTGCCCCCCGAGTTCTTCGAGCTGCTGAGCGAGGGAGGAGTTGGCCTGGTGGAAACGGGGGCAGTTATGGTCACCAACGgttaccaccaccaccatcaccccCCGAACCCTCCGCCTGCCTCCCCATCAGTCAGTGAGGAAGAGCTGTCCACCGTTCCAAACTCGTCCCCGTCCTgctcctcatcttcctcatcctcgCAGTCGCCTTCCCTTAACTGCTCACCTTcctcctcccctcctctctcCCCTCCACCGGCCCCTGCCTCCTCACGCCTGGGCAAGAGGAAGAAAGGGAGTGCACTTACCTCACCTTTCTCAGGGAAGAAGAGCAGAAAGGAGCGGGAGCAGGAGAATGAGAggaaggtgcaggagctgacCGACCAGAATGAGAGGCTTAAAGCTGAGATTGAGCGACTTGGCGAGGAGGTTCAGCGGACACGCCGTGCACTCATCGAGAGGCTCGTCAACACCAGGAAGTGAGGGGTTACGGGAAGGAAGTGGGGTAGAGAAAGgttggaaagaaagaaggaa

Function

symbol description
ddit3 Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and protein heterodimerization activity. Acts upstream of or within intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress; regulation of lipid biosynthetic process; and response to hypoxia. Predicted to be located in nucleus. Predicted to be part of CHOP-ATF3 complex; CHOP-ATF4 complex; and CHOP-C/EBP complex. Predicted to be active in cytoplasm. Is expressed in brain; caudal fin; digestive system; and head. Human ortholog(s) of this gene implicated in myxoid liposarcoma. Orthologous to human DDIT3 (DNA damage inducible transcript 3).

NR:

description
PREDICTED: DNA damage-inducible transcript 3 protein

GO:

id name namespace
GO:0046890 regulation of lipid biosynthetic process biological_process
GO:0070059 intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress biological_process

KEGG:

id description
K04452 DDIT3, GADD153; DNA damage-inducible transcript 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925428.2 True 1145 mRNA 0.57 4 11517494 11520910

Neighbor

gene id symbol gene type direction distance location
dctn2 dctn2,LOC107558166 coding upstream 16978 11486737 ~ 11500516 (+)
LOC117595871 NA coding upstream 61404 11452072 ~ 11456090 (+)
igsf8 igsf8,LOC108431823 coding upstream 98054 11408776 ~ 11419440 (+)
sp7 sp7 coding upstream 159841 11353572 ~ 11357653 (+)
stmn3 stmn3 coding upstream 181996 11330363 ~ 11335498 (+)
arhgap9 arhgap9 coding downstream 15419 11536329 ~ 11579131 (+)
LOC113526407 r3hdm2 coding downstream 174721 11695631 ~ 11753218 (+)
LOC113534407 stac3 coding downstream 233653 11754563 ~ 11760603 (+)
LOC113547077 nxph4,LOC107556734,LOC107758187,LOC107676147,LOC107735585 coding downstream 311797 11832707 ~ 11892740 (+)
shmt2 shmt2,LOC107758195,LOC103359782 coding downstream 381308 11902218 ~ 11937563 (+)
G25387 NA non-coding upstream 32128 11484801 ~ 11485366 (+)
G25374 NA non-coding upstream 56149 11461122 ~ 11461345 (+)
G25372 NA non-coding upstream 57023 11460261 ~ 11460471 (+)
G25371 NA non-coding upstream 59490 11457778 ~ 11458004 (+)
G25357 kif5a,kif5ab,LOC106566150,LOC107558152,LOC107681593,LOC106582664 non-coding upstream 72058 11445124 ~ 11445436 (+)
G25408 NA non-coding downstream 58828 11579738 ~ 11580030 (+)
G25410 NA non-coding downstream 64497 11585407 ~ 11585643 (+)
G25422 gli1 non-coding downstream 98259 11619169 ~ 11623069 (+)
G25434 NA non-coding downstream 141320 11662230 ~ 11663094 (+)
LOC117599151 NA non-coding downstream 147909 11668819 ~ 11688224 (+)
G25029 NA other upstream 608922 10906200 ~ 10908572 (+)
G24500 NA other upstream 1319039 10197966 ~ 10198455 (+)
manbal manbal other upstream 1576307 9938365 ~ 9941187 (+)
LOC113530691 LOC108410934,LOC108272263,LOC107696444,LOC107587591,LOC107744363 other upstream 1594329 9874708 ~ 9923165 (+)
LOC113532547 LOC108271588 other upstream 1913988 9591941 ~ 9603506 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other downstream 683531 12204441 ~ 12213657 (+)
G25908 LOC108272198 other downstream 1005260 12526170 ~ 12527491 (+)
si:ch211-286o17.1 NA other downstream 1208083 12728993 ~ 12751277 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other downstream 1744878 13265788 ~ 13332177 (+)
tshba tshb,LOC108271948 other downstream 1969251 13490161 ~ 13506004 (+)

Expression


Co-expression Network