padi2 (padi2,LOC100380857)


Basic Information

Item Value
gene id padi2
gene name padi2,LOC100380857
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 12933658 ~ 12949604 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925720.2
TTACACACAACAGCAGGATACCTGAGAGCGGAGAAGAGAACACAAGTACCTGGCACTATGGAGCAGCAAAAACATACTTCAACTGTGTTACTGCCAAAGAGAAAAGTTCGTAACAGCGATACTAACACGTCCCAGAGAACCTATCGCCTGAAAATCAACAACACATTAAGGGCCGTCTATGTTGTTGGGACTGAGCTGAAGATTAACCTGGACagttgtgCCCCAGTACAGAGCAAGTCCTACTCTGTTAAATGCACCCCCAATGTGCAGTGCCAGGTTTTGCCTCAGGTCCAGGCTGGAAACTCGCTCTTCTTGCCACAGCCACTCAGCAGAGACACTGTGCTTCTCATTTCCATGGAAGCTGCCAGCTTGCAGCCCAATGACAGCAAGCTATCTGTGAGGTTCTATGGGGATAAGTCAGAGATTCTTGGAAATGCTGTGCTGCATCTTACAGCTGTTGAAATCTCCCTAGATGTGGATGCAGATCGAGATGGTATTGTTGAGAGGAACAATCCAAACAAGGCTTCATGGAAGTGGGGTCCTAATGGACACGGTGCCATTCTGCTGGTCAACTGTGACTCTGAGTCTACCGTCTTAAAGAAAGTGGACAGTGAGAATGAGGAGCTCAGTAAAATCTCAGATTTAAAGGACATGTCCAAGATGATCTTGCGTACCAGTGGCCCAGCTGTGCTCCCAGAAGGCTATAAACTGAGCTTGCATATCTCTCAGACAGACGCTGAGAGAGTGAGAATCTTCAGGGCCAGGTCCACCAAGCAGGCAGAGGCCTCTCTGAAAAATACATTCCTCAGTTTGTTCCAGAAGGAATATCCTTTAGTGCTGAACAAAAAGCAACTGGCTAATGAAGTCCCCTATCAGGGTGGCAAGTCTGAGCTAATGTTCTATGTGGAGGGCCTTCACTTTCCAGATAAGGACTTTGATGGGCTACTTACGATCAACCTTAGTCTTTTAGAGCCTGTTGCTGAGGGTTTCCCAGAGACTCCGATTTTCACTGACAAGGTCATGTTCCGTGTTGCTCCTTGGATTATGACACCCAACACCCTAAGACCTCTGGAAGTCTTTGTCTGCAGCACATCTGATAACTATGAGTTTCTGAAGGGCATAAAGCAACTGTCCCAGAAGAGTGGACACAAACTGAGGATATGCCACGAGTACATGAACCGAGGAGATCGCTGGATGCAGGATGAGCTTGAGTTCGGCTATATTGATTCTCCGCACCAAAGATTTCCTGTGGTCCTGGACTCTCCACGAGATGGAGACCTTGGGGATTTCCCCTATGATGTCTTACTGGGTCCAGACTTTGGCTATGTGACCCGCTACGCTTCAAGACAAGAGGTGAGCAGCTTAGATTCATTTGGTAATCTGGAGGTAAGCCCCCCTGTCACTGTGAATGGGAAGAACTATCCACTGGGCCGGATCATCATTGGCGTGGCCTTCCCTACCACAGAGCATGGCCGCAATATGACCAAAGTGGTGCAGGACTTCCTGTGGGCTCAGAAGGTTCAGGAGCCCATTGCCCTCTACTCTGATTGGCTCTTCGTGGGTCATGTGGATGAGTTCATGACTTTTGTCCCAGCTCCTGACAGAAAGCAATTCAGACTGCTGCTGGCCAGCCCTGATGCAGCATATAAAGTGTTCAGGACATTGCAGAATAAAGGACATGGGAATGCTAAGATGTTTGCAGGGACAGAGGAGGAGGTCAGCGTTGATCAGATCTTGAGTGATGAGGAGTTTCAAGCAGAAAACAGTTATGTCCAGAGCTGTATTGACTGGAACAGGGATGTACTAAAGAAAGAGCTTGCACTAGATGATGAAGACATCATTGATGTACCAGTCCTGTTTAAAGTGATTCCTGAAAAGAACAGAGCTGTGGCGTTTTACCCTGACATGGTGAACATGATAGTACTCGGGAGGAACCTTGGCATTCCCAAGCCTTTTGGGCCACAGGTGGATGGAAAATGTGCCCTGGAGACTGAGATCCGCTCTCTGCTTGAGCCGCTTGGCCTGAACTGCTACTTCATTGATGACTTTGCATCCTACCACAAGCTCCTGGGGGAAGTGCACTGTGGCTCCAATGTGCTCAGAGAACCTTTCACCTTTAAATGGTGGAACCTTGAGCTGTGAGAAAGTAGAGCACAACGAATTCAGTAGGGTTTGATAACATGTGAGTACAATATCAAGAGGTCTTTTTTGTTTCACTTATAAAAAACTAATACAATATATTTCCCAAAGAAGGTAACATCATCTTCATTATTATAGGTTTGCTATTATTTATTGACAGCATAGAGCACTGTACAGAGCCTATATCAAGTGTTAGTCATTATGAGATGATAGCATGTGTTTAAAGCATTTGTGTTACTATTTGAGTGAAATACCATATCATTTTTGAATGGAGGAAATTGTGTAAGCTTGATATTcagaaatattacatttttcataCATGGATGaactctgggtactctggtttcctcccccagtccaaagacatgtgttgtaggctgattggcatctctaaattgtcagtagtgtgtgaatgtgagtgagcgattgtgccctgtgatggactggcaccccgtccaggcgccccgagtcccctggaataggctccaggctccctcatgaccctgtgtaggataagtgctATAGAGAAtggatgggatggatggatttctTGGATGACTAAAAGGTGTTCATAAATAATAAGTACTAATAGAGTTAAAAACTTTATTTGACGTTTGAtaaattgtgaaatatacaGGTCTTGGAGGGGAACTCGGATGTTTTGACGCTACTGCATACCTGTTGcctgcaaaaaatcatgcagttcCCAGAACAATCTACTAAAGCAGTATAACAAATCCCTACTGCACTAAGTTTGCCTACTGCAGTAAGAGTATCTACCAACCACTATGCGTCTGGGAATCTAGTTTTTTACGCTTCTGCGTTGTTGTTTTGTCCTGCTTACTTTATTACTACCTTTGGTGCCTTAACAATGAGACcttttgaaagaaaatgtttttgtgttgttttactGAATGAAAAATACAGTGTAACACAGCAccttttcacactgtacaaaataatcaataaaaccATTCTAAACATTG
>XM_026925727.2
ACTTTTCCAGCCCAGAAGGGCTGTGTCCGGTAGACTTTAAAATCAGTCTAGTGCCCTTTCTGAACTCTCCCCTCTCTCCTGCTGTAAGTAGTAGTGTAGCCAGTACGGAAGTAGAGGTTAAAGTGGGACAGAGGCGCTGTGTGAGTCAGTGCAGTGAGCGGAATTGTAGCTGCTTTGCAGAGCCGGCAGCAGCCGCAGTGTAGCTGTGTAAACCCAGACACGGTGTGTGTAAAAGTTAGGATGAGTGGAGCTCCAGCAAAACACAGGACCATGAATTCACCCCGAACTCTGCGCCTCGTCACTGGCAAGAGCACCAGGACCCTGTATGTGTTGGGAAGGAAACTGAGAGTGAATTTAACAAGttgtgCCCCAGTACAGAGCAAGTCCTACTCTGTTAAATGCACCCCCAATGTGCAGTGCCAGGTTTTGCCTCAGGTCCAGGCTGGAAACTCGCTCTTCTTGCCACAGCCACTCAGCAGAGACACTGTGCTTCTCATTTCCATGGAAGCTGCCAGCTTGCAGCCCAATGACAGCAAGCTATCTGTGAGGTTCTATGGGGATAAGTCAGAGATTCTTGGAAATGCTGTGCTGCATCTTACAGCTGTTGAAATCTCCCTAGATGTGGATGCAGATCGAGATGGTATTGTTGAGAGGAACAATCCAAACAAGGCTTCATGGAAGTGGGGTCCTAATGGACACGGTGCCATTCTGCTGGTCAACTGTGACTCTGAGTCTACCGTCTTAAAGAAAGTGGACAGTGAGAATGAGGAGCTCAGTAAAATCTCAGATTTAAAGGACATGTCCAAGATGATCTTGCGTACCAGTGGCCCAGCTGTGCTCCCAGAAGGCTATAAACTGAGCTTGCATATCTCTCAGACAGACGCTGAGAGAGTGAGAATCTTCAGGGCCAGGTCCACCAAGCAGGCAGAGGCCTCTCTGAAAAATACATTCCTCAGTTTGTTCCAGAAGGAATATCCTTTAGTGCTGAACAAAAAGCAACTGGCTAATGAAGTCCCCTATCAGGGTGGCAAGTCTGAGCTAATGTTCTATGTGGAGGGCCTTCACTTTCCAGATAAGGACTTTGATGGGCTACTTACGATCAACCTTAGTCTTTTAGAGCCTGTTGCTGAGGGTTTCCCAGAGACTCCGATTTTCACTGACAAGGTCATGTTCCGTGTTGCTCCTTGGATTATGACACCCAACACCCTAAGACCTCTGGAAGTCTTTGTCTGCAGCACATCTGATAACTATGAGTTTCTGAAGGGCATAAAGCAACTGTCCCAGAAGAGTGGACACAAACTGAGGATATGCCACGAGTACATGAACCGAGGAGATCGCTGGATGCAGGATGAGCTTGAGTTCGGCTATATTGATTCTCCGCACCAAAGATTTCCTGTGGTCCTGGACTCTCCACGAGATGGAGACCTTGGGGATTTCCCCTATGATGTCTTACTGGGTCCAGACTTTGGCTATGTGACCCGCTACGCTTCAAGACAAGAGGTGAGCAGCTTAGATTCATTTGGTAATCTGGAGGTAAGCCCCCCTGTCACTGTGAATGGGAAGAACTATCCACTGGGCCGGATCATCATTGGCGTGGCCTTCCCTACCACAGAGCATGGCCGCAATATGACCAAAGTGGTGCAGGACTTCCTGTGGGCTCAGAAGGTTCAGGAGCCCATTGCCCTCTACTCTGATTGGCTCTTCGTGGGTCATGTGGATGAGTTCATGACTTTTGTCCCAGCTCCTGACAGAAAGCAATTCAGACTGCTGCTGGCCAGCCCTGATGCAGCATATAAAGTGTTCAGGACATTGCAGAATAAAGGACATGGGAATGCTAAGATGTTTGCAGGGACAGAGGAGGAGGTCAGCGTTGATCAGATCTTGAGTGATGAGGAGTTTCAAGCAGAAAACAGTTATGTCCAGAGCTGTATTGACTGGAACAGGGATGTACTAAAGAAAGAGCTTGCACTAGATGATGAAGACATCATTGATGTACCAGTCCTGTTTAAAGTGATTCCTGAAAAGAACAGAGCTGTGGCGTTTTACCCTGACATGGTGAACATGATAGTACTCGGGAGGAACCTTGGCATTCCCAAGCCTTTTGGGCCACAGGTGGATGGAAAATGTGCCCTGGAGACTGAGATCCGCTCTCTGCTTGAGCCGCTTGGCCTGAACTGCTACTTCATTGATGACTTTGCATCCTACCACAAGCTCCTGGGGGAAGTGCACTGTGGCTCCAATGTGCTCAGAGAACCTTTCACCTTTAAATGGTGGAACCTTGAGCTGTGA

Function

symbol description
padi2 Predicted to enable protein-arginine deiminase activity. Acts upstream of or within vasculature development. Predicted to be active in cytoplasm and nucleus. Is expressed in epidermis; pectoral fin musculature; periderm; pharynx; and sensory system. Human ortholog(s) of this gene implicated in infertility. Orthologous to several human genes including PADI2 (peptidyl arginine deiminase 2).

NR:

description
PREDICTED: protein-arginine deiminase type-2-like isoform X1

GO:

id name namespace
GO:0018101 protein citrullination biological_process
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004668 protein-arginine deiminase activity molecular_function

KEGG:

id description
K01481 E3.5.3.15; protein-arginine deiminase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925720.2 True 3125 mRNA 0.45 16 12933658 12949604
XM_026925727.2 False 2289 mRNA 0.49 16 12935443 12948621

Neighbor

gene id symbol gene type direction distance location
tespa1 tespa1,LOC107549312 coding upstream 501521 12422155 ~ 12432137 (+)
LOC113533905 LOC108271551 coding upstream 530977 12394065 ~ 12402681 (+)
LOC113533827 LOC108271551 coding upstream 547971 12364125 ~ 12385687 (+)
stau1 stau1 coding upstream 663851 12260322 ~ 12269807 (+)
pbrm1l LOC108271990,LOC108427561,LOC107667000,LOC107713535 coding upstream 674468 12246651 ~ 12259190 (+)
phc2b LOC108272160,LOC108427585 coding downstream 137336 13086940 ~ 13117556 (+)
cttnbp2nla LOC108272146 coding downstream 170699 13120303 ~ 13139653 (+)
wnt2ba LOC108271793,LOC106582740,LOC107666178,LOC107729733,LOC107708099 coding downstream 197666 13147270 ~ 13156144 (+)
mov10a mov10,LOC108427590 coding downstream 250448 13200052 ~ 13214563 (+)
LOC113543455 LOC108272164,LOC108272179,LOC108427594 coding downstream 491589 13441193 ~ 13448129 (+)
G26266 NA non-coding upstream 25564 12855396 ~ 12908094 (+)
G26233 NA non-coding upstream 133804 12799618 ~ 12799854 (+)
G26231 NA non-coding upstream 135629 12797696 ~ 12798029 (+)
G26229 NA non-coding upstream 138357 12795088 ~ 12795301 (+)
LOC117595882 NA non-coding upstream 171372 12758499 ~ 12762286 (+)
LOC113533310 NA non-coding downstream 402242 13351846 ~ 13374496 (+)
G26749 NA non-coding downstream 485300 13434904 ~ 13517403 (+)
G26848 NA non-coding downstream 676877 13626481 ~ 13629466 (+)
G26873 NA non-coding downstream 872780 13822384 ~ 13825226 (+)
G26875 NA non-coding downstream 884635 13834239 ~ 13836347 (+)
si:ch211-286o17.1 NA other upstream 182381 12728993 ~ 12751277 (+)
G25908 LOC108272198 other upstream 406167 12526170 ~ 12527491 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other upstream 720001 12204441 ~ 12213657 (+)
G25029 NA other upstream 2025086 10906200 ~ 10908572 (+)
G24500 NA other upstream 2735203 10197966 ~ 10198455 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other downstream 316184 13265788 ~ 13332177 (+)
tshba tshb,LOC108271948 other downstream 540557 13490161 ~ 13506004 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other downstream 2329218 15278822 ~ 15304494 (+)
LOC113534559 LOC108272085 other downstream 2839022 15788626 ~ 15790444 (+)
slc2a11a LOC108271728,LOC108440316 other downstream 3133685 16083289 ~ 16103248 (+)

Expression


Co-expression Network