mybphb (mybph,LOC107696393,LOC108441582,LOC107587590,LOC107740275,LOC107744364)


Basic Information

Item Value
gene id mybphb
gene name mybph,LOC107696393,LOC108441582,LOC107587590,LOC107740275,LOC107744364
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9855971 ~ 9868275 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925788.2
CCCTTCCGAGACGCAGTCGAAGGTGCCAAGTTAGCGTGAGGGATCTTTCCTGCGGACAATCATGCCGGCCAAGCCAGCACCCATTAAGAAAGGGGTCAAGGTGGTGAAGAAGGAGGCGCCACCGCCGAAGCCCGAGCCTGCACCCGCGCCACCTCCGGCTGAAGCTCCACCCGCCGAGGCGCCTCCAGCTGAAGCTCCACCCGCCGAGGCGCCTCCAGCTGAAGCCCCACCTGCCGAGGCCCCTGCAGCGGCTCCAGCCGAGGCTCCACCAGCGGAGGTGCCCCAAAACGCTGATGCTGCCCCTGGCCAGGAAGACGCTGCACCTGCTGAAGGAGAGGCTCCTGCTGATGCCCCTGCTGCCGAAGCTCCACCAGCTGAGGAGATCAAAGCTCCTacccctcctcctcctgcagAGCCCACCAGCGAGCCTCTGGAGTTGGTTGTAGAGGATGTCAATGATGTTTCGGTCACTATCCAGTGGAGACCTCCTGCTACCATTGGGAGCGCTGGCTTGGATGGATACACTGTGGAATCCTGCAAGGAAGGAACTGGTGATTGGAAGGCTGTTAATGAGGAGCTCACCATTTCCTGCCGTTATGTCATTAAGAACCAGACCACTGGTGACCGTCTCAACATCAGGGTGGTGGCTGTGAACGCTGGTGGCCGCAGCCCCCCTGCCACTTTACCTGATGCCGTCCTGGTCAGAGAAATTGTTGATCGCCCCAAGATTCGCCTGCCACGTTTCCTGAGGCAGCGCTATGTGATTAACGTTGGAGAGAAAGTCAACCTTGTCATCCCCTTTAGTGGCAAACCCCAGCCTGTTGTGACCTGGACAAAGGATGGACAGCCCCTTGACACCAAGAGGGTGAATATCCGCAACAGTGAAAGAGACAGCATCTTTTTCATCCGTGCATCTGAGCGAGCTGACTCTGGTGTCTATGAGATGTGTGTTAAAGTGGACAGCTTTGAAGACAAAGCCCAGCTGACTCTGCAGATTATTGAACTGCCAGGTCCACCAGCAAGCGTAAAGATTGTGGACGCCTGGGGGTTCAATGTTGCTTTGGAATGGACCGAGCCGAAGGATAATGGAAACACAACTATCACTGGATACACAGTGCAGAAGGCTGACAAAAAGACTGGGGACTGGTTCACAGTGCTGGAACACTATCACAGGCTGAATGCCACTGTCTCAGACCTGATCATGGGAAATACTTATGCTTTCAGGGTCTTCTCTGAGAACAAGTGTGGAATCAGCGAGAATGCCACTGTTACAAAGACCTCTGCCACCATCCAGAAGACAGGTATTGACTATAAACCACCAGACTACAAGGAACATAACTTCAGCGAGGCCCCCAAGTTCACCACCGGCATGCCAGACCGCTGCACCACTGTGGGCTACAGCACCAAGCTGCTATGCTCCGTCAGAGGATTCCCTAAGCCCAAGATTCAGTGGATGAAGAACCAGATGATCATCGGTGATGACCCCAAGTACAGGCAGATAAACAACCAGGGCATCTGCAGTCTGGAGATCCGCAAGCCTGGTAACTTCGATGGTGGTGTGTACACATGCAAGGCCATCAATGAACATGGTGAGGCGGTTGTCACCTGCAAGCTGGAGGTCAAACAAGCACTGATTCCTGATGCTGATAAGAAATAAGTCCTAAATTAGGAGCATCAGGATCACAATTTGCTCAAAAGGATTTTGAAGACACCGGTTGCtgacgcaaaaaaaaaaaaaatgtaatgaactgtacatataaaagaaataacCAGTCTTTTTCTTGTGTAACACTTCGACTCACAAATAGAGCACATCTATTATATAGGTATATCATCGACTGCCTATGGTTGAGACaactgtttatttgtttctatttatgtatgtatCTTCTGATACCTGGCACTGTCCTTATGTTTAAGACTGATCAAGTTTTTGCCTGTTAAAGGGATCATCTGCAGAAAAAGGGAAACgtttcagtgtttattaaaaataaattcatgccTTCAA
>XM_026925796.2
CCCTTCCGAGACGCAGTCGAAGGTGCCAAGTTAGCGTGAGGGATCTTTCCTGCGGACAATCATGCCGGCCAAGCCAGCACCCATTAAGAAAGGGGTCAAGGTGGTGAAGAAGGAGGCGCCACCGCCGAAGCCCGAGCCTGCACCCGCGCCACCTCCGGCTGAAGCTCCACCCGCCGAGGCGCCTCCAGCTGAAGCTCCACCCGCCGAGGCGCCTCCAGCTGAAGCCCCACCTGCCGAGGCCCCTGCAGCGGCTCCAGCCGAGGCTCCACCAGCGGAGGTGCCCCAAAACGCCCCTGCTGCCGAAGCTCCACCAGCTGAGGAGATCAAAGCTCCTacccctcctcctcctgcagAGCCCACCAGCGAGCCTCTGGAGTTGGTTGTAGAGGATGTCAATGATGTTTCGGTCACTATCCAGTGGAGACCTCCTGCTACCATTGGGAGCGCTGGCTTGGATGGATACACTGTGGAATCCTGCAAGGAAGGAACTGGTGATTGGAAGGCTGTTAATGAGGAGCTCACCATTTCCTGCCGTTATGTCATTAAGAACCAGACCACTGGTGACCGTCTCAACATCAGGGTGGTGGCTGTGAACGCTGGTGGCCGCAGCCCCCCTGCCACTTTACCTGATGCCGTCCTGGTCAGAGAAATTGTTGATCGCCCCAAGATTCGCCTGCCACGTTTCCTGAGGCAGCGCTATGTGATTAACGTTGGAGAGAAAGTCAACCTTGTCATCCCCTTTAGTGGCAAACCCCAGCCTGTTGTGACCTGGACAAAGGATGGACAGCCCCTTGACACCAAGAGGGTGAATATCCGCAACAGTGAAAGAGACAGCATCTTTTTCATCCGTGCATCTGAGCGAGCTGACTCTGGTGTCTATGAGATGTGTGTTAAAGTGGACAGCTTTGAAGACAAAGCCCAGCTGACTCTGCAGATTATTGAACTGCCAGGTCCACCAGCAAGCGTAAAGATTGTGGACGCCTGGGGGTTCAATGTTGCTTTGGAATGGACCGAGCCGAAGGATAATGGAAACACAACTATCACTGGATACACAGTGCAGAAGGCTGACAAAAAGACTGGGGACTGGTTCACAGTGCTGGAACACTATCACAGGCTGAATGCCACTGTCTCAGACCTGATCATGGGAAATACTTATGCTTTCAGGGTCTTCTCTGAGAACAAGTGTGGAATCAGCGAGAATGCCACTGTTACAAAGACCTCTGCCACCATCCAGAAGACAGGTATTGACTATAAACCACCAGACTACAAGGAACATAACTTCAGCGAGGCCCCCAAGTTCACCACCGGCATGCCAGACCGCTGCACCACTGTGGGCTACAGCACCAAGCTGCTATGCTCCGTCAGAGGATTCCCTAAGCCCAAGATTCAGTGGATGAAGAACCAGATGATCATCGGTGATGACCCCAAGTACAGGCAGATAAACAACCAGGGCATCTGCAGTCTGGAGATCCGCAAGCCTGGTAACTTCGATGGTGGTGTGTACACATGCAAGGCCATCAATGAACATGGTGAGGCGGTTGTCACCTGCAAGCTGGAGGTCAAACAAGCACTGATTCCTGATGCTGATAAGAAATAAGTCCTAAATTAGGAGCATCAGGATCACAATTTGCTCAAAAGGATTTTGAAGACACCGGTTGCtgacgcaaaaaaaaaaaaaatgtaatgaactgtacatataaaagaaataacCAGTCTTTTTCTTGTGTAACACTTCGACTCACAAATAGAGCACATCTATTATATAGGTATATCATCGACTGCCTATGGTTGAGACaactgtttatttgtttctatttatgtatgtatCTTCTGATACCTGGCACTGTCCTTATGTTTAAGACTGATCAAGTTTTTGCCTGTTAAAGGGATCATCTGCAGAAAAAGGGAAACgtttcagtgtttattaaaaataaattcatgccTTCAA
>XM_026925802.2
CCTTCCGAGACGCAGTCGAAGGTGCCAAGTTAGCGTGAGGGATCTTTCCTGCGGACAATCATGCCGGCCAAGCCAGCACCCATTAAGAAAGGGGTCAAGGTGGTGAAGAAGGAGGCGCCACCGCCGAAGCCCGAGCCTGCACCCGCGCCACCTCCGGCTGAAGCTCCACCCGCCGAGGCGCCTCCAGCTGAAGCTCCACCCGCCGAGGCGCCTCCAGCTGAAGCCCCACCTGCCGAGGCCCCTGCAGCGGCTCCAGCCGAGGCTCCACCAGCGGAGGTGCCCCAAAACGAGCCCACCAGCGAGCCTCTGGAGTTGGTTGTAGAGGATGTCAATGATGTTTCGGTCACTATCCAGTGGAGACCTCCTGCTACCATTGGGAGCGCTGGCTTGGATGGATACACTGTGGAATCCTGCAAGGAAGGAACTGGTGATTGGAAGGCTGTTAATGAGGAGCTCACCATTTCCTGCCGTTATGTCATTAAGAACCAGACCACTGGTGACCGTCTCAACATCAGGGTGGTGGCTGTGAACGCTGGTGGCCGCAGCCCCCCTGCCACTTTACCTGATGCCGTCCTGGTCAGAGAAATTGTTGATCGCCCCAAGATTCGCCTGCCACGTTTCCTGAGGCAGCGCTATGTGATTAACGTTGGAGAGAAAGTCAACCTTGTCATCCCCTTTAGTGGCAAACCCCAGCCTGTTGTGACCTGGACAAAGGATGGACAGCCCCTTGACACCAAGAGGGTGAATATCCGCAACAGTGAAAGAGACAGCATCTTTTTCATCCGTGCATCTGAGCGAGCTGACTCTGGTGTCTATGAGATGTGTGTTAAAGTGGACAGCTTTGAAGACAAAGCCCAGCTGACTCTGCAGATTATTGAACTGCCAGGTCCACCAGCAAGCGTAAAGATTGTGGACGCCTGGGGGTTCAATGTTGCTTTGGAATGGACCGAGCCGAAGGATAATGGAAACACAACTATCACTGGATACACAGTGCAGAAGGCTGACAAAAAGACTGGGGACTGGTTCACAGTGCTGGAACACTATCACAGGCTGAATGCCACTGTCTCAGACCTGATCATGGGAAATACTTATGCTTTCAGGGTCTTCTCTGAGAACAAGTGTGGAATCAGCGAGAATGCCACTGTTACAAAGACCTCTGCCACCATCCAGAAGACAGGTATTGACTATAAACCACCAGACTACAAGGAACATAACTTCAGCGAGGCCCCCAAGTTCACCACCGGCATGCCAGACCGCTGCACCACTGTGGGCTACAGCACCAAGCTGCTATGCTCCGTCAGAGGATTCCCTAAGCCCAAGATTCAGTGGATGAAGAACCAGATGATCATCGGTGATGACCCCAAGTACAGGCAGATAAACAACCAGGGCATCTGCAGTCTGGAGATCCGCAAGCCTGGTAACTTCGATGGTGGTGTGTACACATGCAAGGCCATCAATGAACATGGTGAGGCGGTTGTCACCTGCAAGCTGGAGGTCAAACAAGCACTGATTCCTGATGCTGATAAGAAATAAGTCCTAAATTAGGAGCATCAGGATCACAATTTGCTCAAAAGGATTTTGAAGACACCGGTTGCtgacgcaaaaaaaaaaaaaatgtaatgaactgtacatataaaagaaataacCAGTCTTTTTCTTGTGTAACACTTCGACTCACAAATAGAGCACATCTATTATATAGGTATATCATCGACTGCCTATGGTTGAGACaactgtttatttgtttctatttatgtatgtatCTTCTGATACCTGGCACTGTCCTTATGTTTAAGACTGATCAAGTTTTTGCCTGTTAAAGGGATCATCTGCAGAAAAAGGGAAACgtttcagtgtttattaaaaataaattcatgccTTCAA

Function

symbol description
mybph Predicted to be a structural constituent of muscle. Predicted to be involved in regulation of striated muscle contraction. Predicted to be located in myosin filament.

NR:

description
PREDICTED: myosin-binding protein H-like isoform X2

GO: NA

KEGG:

id description
K24494 MYBPH; myosin-binding protein H

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925788.2 True 2008 mRNA 0.51 14 9855971 9868275
XM_026925796.2 False 1948 mRNA 0.51 13 9855971 9868275
XM_026925802.2 False 1884 mRNA 0.50 12 9855972 9868275

Neighbor

gene id symbol gene type direction distance location
nav1b nav1 coding upstream 430 9788663 ~ 9855541 (+)
pkp1b pkp1 coding upstream 144133 9694499 ~ 9711838 (+)
smpd2b LOC108271873 coding upstream 163005 9682331 ~ 9692966 (+)
tead3b tead3,LOC108441590,LOC107665997,LOC105907572 coding upstream 183326 9639105 ~ 9672645 (+)
LOC113533334 tulp1,LOC108441591,LOC107587584,LOC107744370 coding upstream 219234 9628575 ~ 9636737 (+)
LOC113536587 LOC108271763,LOC108410937,LOC107666076,LOC107740256,LOC797048,LOC107696440,LOC107587593 coding downstream 95698 9963973 ~ 9974363 (+)
zgc:109913 LOC108271762 coding downstream 107167 9975442 ~ 9978699 (+)
pltp pltp coding downstream 143260 10011535 ~ 10025366 (+)
ncoa5 ncoa5 coding downstream 166358 10034633 ~ 10044782 (+)
nat8l2 LOC108271756 coding downstream 335299 10203574 ~ 10208434 (+)
G24289 NA non-coding upstream 86470 9769288 ~ 9769501 (+)
G24283 NA non-coding upstream 97005 9758585 ~ 9758966 (+)
LOC113534952 NA non-coding upstream 116520 9738017 ~ 9739451 (+)
G24183 NA non-coding upstream 186580 9658633 ~ 9669391 (+)
G24178 NA non-coding upstream 240508 9613112 ~ 9615463 (+)
G24354 NA non-coding downstream 332 9868607 ~ 9954984 (+)
G24390 NA non-coding downstream 125287 9993562 ~ 9995992 (+)
LOC117599366 NA non-coding downstream 137262 10005537 ~ 10010607 (+)
G24463 NA non-coding downstream 274734 10143009 ~ 10143237 (+)
G24476 NA non-coding downstream 283487 10151762 ~ 10152208 (+)
LOC113532547 LOC108271588 other upstream 252465 9591941 ~ 9603506 (+)
hmga1b NA other upstream 401509 9450925 ~ 9454462 (+)
cysltr3 LOC108271499 other upstream 851030 8996934 ~ 9004941 (+)
lrrn1 lrrn1,LOC107713505,LOC107667032,LOC107584468,LOC107680720 other upstream 1416630 8407805 ~ 8439341 (+)
rybpb rybp,LOC108272260,LOC107599415,LOC107680715,LOC107732045,LOC107713516,LOC107584476 other upstream 1925414 7905598 ~ 7930557 (+)
LOC113530691 LOC108410934,LOC108272263,LOC107696444,LOC107587591,LOC107744363 other downstream 6433 9874708 ~ 9923165 (+)
manbal manbal other downstream 70090 9938365 ~ 9941187 (+)
G24500 NA other downstream 329691 10197966 ~ 10198455 (+)
G25029 NA other downstream 1037925 10906200 ~ 10908572 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other downstream 2336166 12204441 ~ 12213657 (+)

Expression


Co-expression Network