LOC113533827 (LOC108271551)


Basic Information

Item Value
gene id LOC113533827
gene name LOC108271551
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 12364125 ~ 12385687 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926200.2
GCGAGGTTTCCACAGCCAGTGGCCACGTCTAGCTTTAGACGTTCACCAAAattcacatactgtacattcccGTGAAGAACTCGTGTTTTACCGGCAAACCTGGTAATCAGAAGGCGCGTTAAGTTCTCCGCTGATGGTGGATTGTAGTTTAGCGTGTGGGCACAAACGGCAAAGTGTTCGCTCCACTGCGCGCTGCGGTGCTTCTGACGCGCGATGGAGAACCTTCAGAAAGATGCGACTTTCTGGCCGCTGAACAGATCACGGAGTGAGTCGAGCAGCGGAAACGAAAGTATAGCTGCAAACCGAACCGAGAACCCTCTGAAGCGCAACGAGGAGGTGGCCAAAGTGGAAGTGGCAGTGTTGTTTGTGGTGCTGCTGCTCGCACTGGCCGGTAACCTGTGCGTACTGGCGGCGCTTCACGCGAGCAAACGCGCGCGCTCGCGCATGCATTTCTTCATGAAACACCTGAGCATCGCGGATCTGGTGGTGGCCATCTTCCAGGTGCTGCCGCAGCTCATCTGGGATATCACGTTCCGCTTCTATGGGCCAGACTTCTTGTGCCGCTTGGTGAAGTATCTGCAGGTGGTGGGGATGTTTGCCTCCACATACCTGCTTGTGCTGATGTCCGTGGACAGGTGCCTTGCAGTATGCCAGCCTCTCCGCTCACTGCGGCGCAGGAAGGACCGTGAGTACGTTCTCGGGTCATGGCTCCTGAGCCTGCTGCTCAGCCTCCCACAGACATACATCTTCTCCCTCAAGGAAGTGGGCCAGGGGGTCTATGACTGCTGGGGAGACTTTGTGCAGCCATGGGGGGCAAAAGCCTACATAACCTGGATAAGCCTTACCATCTACATCATACCTGTTAccattctgagtgtgtgttatggccTCACAAGTTTTAAGATATGGCAAAACTTCAAGCAGAAGAGCAGAAAGGATCAGCCTCTAAGATTGTCTGGGGAGCTGGCCGATAGTGCAGCACTTTCACGCGTCAGCAGTGTGAGACTCATCTCTGAGGCGAAAATCAGGACGGTGAAAATGACATTTGTTGTCGTCTTGGCCTACATTGTGTGCTGGACGCCATTCTTCTTCGTGCAGATGTGGTCAGCTTGGGATCCTATGGCACCAAGAGAGGAAATGGCATTCATTATTACCATGCTTCTGGCTAGCCTGAACAGTTGCTGTAACCCCTGGATCTACATGTTCTTTGCTGGCCACCTGTTGCGTGACCTGATGCACAACTGCCTGATAACATTACGCTGTAACAGTGTGGGGCAGCAGAGTCCTAATGGCCATGCAGGAGAAATAGTGATGAAGGACACTGGCAGCCAGAGGAGCCTCACTCAAACATCGTAAACTACGTAACACAGCAGACTGCAAGGAAGGCAAGAGAAATGAGGACAAACTCTCTGCAAACCATGGCTGCAAATGGGGAAAACACCTACATATAGTTGACTTACAGAGGCTCTTTGGTCTGGACTTTACTGACTTGTACTATAAGAAAAGTTATTCATATGGACAGATACAATCATTAAAGACCTGATAATAAACCTCAGGACCAATGTATTAAAATACA

Function

NR:

description
PREDICTED: isotocin receptor-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0045766 positive regulation of angiogenesis biological_process
GO:0048848 neurohypophysis morphogenesis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004990 oxytocin receptor activity molecular_function
GO:0005000 vasopressin receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926200.2 True 1576 mRNA 0.51 3 12364125 12385687

Neighbor

gene id symbol gene type direction distance location
stau1 stau1 coding upstream 94318 12260322 ~ 12269807 (+)
pbrm1l LOC108271990,LOC108427561,LOC107667000,LOC107713535 coding upstream 104935 12246651 ~ 12259190 (+)
cfap20dc c11h3orf67 coding upstream 160953 12183047 ~ 12203172 (+)
cenps LOC108271797,LOC107713529,LOC107708744,LOC107555976 coding upstream 328336 12032047 ~ 12035789 (+)
h6pd h6pd coding upstream 337491 12020246 ~ 12026634 (+)
LOC113533905 LOC108271551 coding downstream 8378 12394065 ~ 12402681 (+)
tespa1 tespa1,LOC107549312 coding downstream 36468 12422155 ~ 12432137 (+)
padi2 padi2,LOC100380857 coding downstream 547971 12933658 ~ 12949604 (+)
phc2b LOC108272160,LOC108427585 coding downstream 701253 13086940 ~ 13117556 (+)
cttnbp2nla LOC108272146 coding downstream 734616 13120303 ~ 13139653 (+)
LOC117599716 NA non-coding upstream 54625 12302924 ~ 12309500 (+)
G25886 NA non-coding upstream 68083 12295611 ~ 12296042 (+)
G25882 NA non-coding upstream 70996 12292923 ~ 12293129 (+)
G25872 NA non-coding upstream 89073 12274852 ~ 12275052 (+)
G25624 LOC108271795 non-coding upstream 326111 11946093 ~ 12038014 (+)
G25907 NA non-coding downstream 22634 12408321 ~ 12408523 (+)
G25939 NA non-coding downstream 89024 12474711 ~ 12475823 (+)
G25909 LOC108271616,LOC108427537,LOC107666972,LOC107708174,LOC107713484,LOC107561018 non-coding downstream 123952 12509639 ~ 12512658 (+)
LOC117595882 NA non-coding downstream 372812 12758499 ~ 12762286 (+)
G26229 NA non-coding downstream 409401 12795088 ~ 12795301 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other upstream 150468 12204441 ~ 12213657 (+)
G25029 NA other upstream 1455553 10906200 ~ 10908572 (+)
G24500 NA other upstream 2165670 10197966 ~ 10198455 (+)
manbal manbal other upstream 2422938 9938365 ~ 9941187 (+)
LOC113530691 LOC108410934,LOC108272263,LOC107696444,LOC107587591,LOC107744363 other upstream 2440960 9874708 ~ 9923165 (+)
G25908 LOC108272198 other downstream 140483 12526170 ~ 12527491 (+)
si:ch211-286o17.1 NA other downstream 343306 12728993 ~ 12751277 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other downstream 880101 13265788 ~ 13332177 (+)
tshba tshb,LOC108271948 other downstream 1104474 13490161 ~ 13506004 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other downstream 2893135 15278822 ~ 15304494 (+)

Expression


Co-expression Network