LOC113533905 (LOC108271551)


Basic Information

Item Value
gene id LOC113533905
gene name LOC108271551
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 12394065 ~ 12402681 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926400.2
ATGGAGAACCTTCAGAAAGATGCTACTTTCTGGCCGCTGAACAGATCACGGAGTGAGTCGAGCAGCGGAAACGAAAGTATAGCTGCAAACCGAACCGAGAACCCTCTGAAGCGCAACGAGGAGGTGGCCAAAGTGGAAGTGGCAGTGTTGTTTGTGGTGCTGCTGCTCGCACTGGCCGGTAACCTGTGCGTACTGGCGGCGCTTCACGCGAGCAAACGCGCGCGCTCGCGCATGCATTTCTTCATGAAACACCTGAGCATCGCGGATCTGGTGGTGGCCATCTTCCAGGTGCTGCCGCAGCTCATCTGGGATATCACGTTCCGCTTCTATGGGCCAGACTTCTTGTGCCGCTTGGTGAAGTATCTGCAGGTGGTGGGGATGTTTGCCTCCACATACCTGCTTGTGCTGATGTCCGTGGACAGGTGCCTTGCAGTATGCCAGCCTCTCCGCTCACTGCGGCGCAGGAAGGACCGTGAGTACGTTCTCGGGTCATGGCTCCTGAGCCTGCTGCTCAGCCTCCCACAGACATATATCTTCTCCCTCAAGGAAGTGGGCCAGGGGGTCTATGACTGCTGGGGAGACTTTGTGCAGCCATGGGGGGCAAAAGCCTACATAACCTGGATAAGCCTTACCATCTACATCATACCTGTTAccattctgagtgtgtgttatggccTCACAAGTTTTAAGATATGGCAAAACTTCAAGCAGAAGAGCAGAAAGGATCAGCCTCTAAGATTGTCTGGGGAGCTGGCCGATAGTGCAGCACTTTCACGCGTCAGCAGTGTGAGACTATGGCACCAAGAGAGGAAATGGCATTCATTATTACCATGCTTCTGGCTAGCCTGAACAGTTGCTGTAACCCCTGGATCTACATGTTCTTTGCTGGCCACCTGTTCCGTGACCTGATGCACAACTGCCTGATAACATTACGCTGTAACTGTG

Function

NR:

description
PREDICTED: isotocin receptor-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0045766 positive regulation of angiogenesis biological_process
GO:0048848 neurohypophysis morphogenesis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004990 oxytocin receptor activity molecular_function
GO:0005000 vasopressin receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926400.2 True 945 mRNA 0.54 2 12394065 12402681

Neighbor

gene id symbol gene type direction distance location
LOC113533827 LOC108271551 coding upstream 8378 12364125 ~ 12385687 (+)
stau1 stau1 coding upstream 124258 12260322 ~ 12269807 (+)
pbrm1l LOC108271990,LOC108427561,LOC107667000,LOC107713535 coding upstream 134875 12246651 ~ 12259190 (+)
cfap20dc c11h3orf67 coding upstream 190893 12183047 ~ 12203172 (+)
cenps LOC108271797,LOC107713529,LOC107708744,LOC107555976 coding upstream 358276 12032047 ~ 12035789 (+)
tespa1 tespa1,LOC107549312 coding downstream 19474 12422155 ~ 12432137 (+)
padi2 padi2,LOC100380857 coding downstream 530977 12933658 ~ 12949604 (+)
phc2b LOC108272160,LOC108427585 coding downstream 684259 13086940 ~ 13117556 (+)
cttnbp2nla LOC108272146 coding downstream 717622 13120303 ~ 13139653 (+)
wnt2ba LOC108271793,LOC106582740,LOC107666178,LOC107729733,LOC107708099 coding downstream 744589 13147270 ~ 13156144 (+)
LOC117599716 NA non-coding upstream 84565 12302924 ~ 12309500 (+)
G25886 NA non-coding upstream 98023 12295611 ~ 12296042 (+)
G25882 NA non-coding upstream 100936 12292923 ~ 12293129 (+)
G25872 NA non-coding upstream 119013 12274852 ~ 12275052 (+)
LOC113533008 NA non-coding upstream 419076 11957228 ~ 11974989 (+)
G25907 NA non-coding downstream 5640 12408321 ~ 12408523 (+)
G25939 NA non-coding downstream 72030 12474711 ~ 12475823 (+)
G25909 LOC108271616,LOC108427537,LOC107666972,LOC107708174,LOC107713484,LOC107561018 non-coding downstream 106958 12509639 ~ 12512658 (+)
LOC117595882 NA non-coding downstream 355818 12758499 ~ 12762286 (+)
G26229 NA non-coding downstream 392407 12795088 ~ 12795301 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other upstream 180408 12204441 ~ 12213657 (+)
G25029 NA other upstream 1485493 10906200 ~ 10908572 (+)
G24500 NA other upstream 2195610 10197966 ~ 10198455 (+)
manbal manbal other upstream 2452878 9938365 ~ 9941187 (+)
LOC113530691 LOC108410934,LOC108272263,LOC107696444,LOC107587591,LOC107744363 other upstream 2470900 9874708 ~ 9923165 (+)
G25908 LOC108272198 other downstream 123489 12526170 ~ 12527491 (+)
si:ch211-286o17.1 NA other downstream 326312 12728993 ~ 12751277 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other downstream 863107 13265788 ~ 13332177 (+)
tshba tshb,LOC108271948 other downstream 1087480 13490161 ~ 13506004 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other downstream 2876141 15278822 ~ 15304494 (+)

Expression


Co-expression Network