LOC113534100 (bivm,LOC107548643,LOC104949108)


Basic Information

Item Value
gene id LOC113534100
gene name bivm,LOC107548643,LOC104949108
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20250115 ~ 20258553 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926703.2
GTTAAAGCAAACCGCGCAGAGGAGGAGGGGGGAATTGCTTCATGCTCACCTTTCTCAGCCTTTTAGCAGACTCATCATATTGAATAATTAGTGGTTTTGCTGTACTTATAAACTCGTAACTTATCAAATTTTAAGTCAGAATTGCTCGTCCTCGGCATCgcatatttgtcatattttttaatgtatttgaacAACCCTCCGTTATTTTCCGTGTGGTATAAACCAGCGGAGCCCCTTTAACAGAAGGCCAGTGTATTGAGAAGtcgtgttgtttttttaatcgttTGCTCATGCGGTGTTTATAAGTTGAAGGGCCAAGGAGTCACATCAGTCCAAAACCAACCAACAGGCAATCTTCTTGTCATCCAAGTGTTCAATGCCTAACACTGCAGAAAGTGAAGGCGGTAACATATCTGGTGCCAAGGATCCGGCACCCCCATCACGGTTGCCGGGCCAAGACGATGAGCGCGGCTTCCTGAACTCATTCAGCCGTGATACGCTGCGCGCCAGACGGGCCTCCAGCGCTGAGCTGCAGCTCCCGTGGACATGCCCGGTCACACATTCCCGGGAGAAATTCTACACAGTGTGCTCTGATTATGCACTGCTCAACCAAGCCCGTCCAATCCTCACCCCCAGAGATGTTCCCCAGTCCAGCCATGACAGCAGCACACCACTGAGTCAATCAAACACCATCACTATCTCCCAGGGTCAGGCTGGAGGAATCCATACACCTTCAGGTGATGCCTGTGATATAGAAGACACATTCTCCAGCAACTCCAAGCCCATTTTAGCCTGGGAGATCGACACCACTGACTTTGATGCCGTTTTAACCCGAAAAGCCAGGACAGGTAATATAAAGAAATTTGGCTTGAAGAAAATGAAGTCATCTGACCGATCGAGCAGAAATGTGCTAGATCTTCCACCACAAGCGTCTCTGGAAGAAATCAAACAGAGGAAAGTCCTGGACTTGCGCAGATGGTACTGCATCAGCCGCCCTCAGTATAAAACTTCATGTGGCATTTCCTCACTCGTCTCTTGCTGGAACTTTCTGTACAGTACCCTTGGAGCTGGAAGcCTTCCACCCATTTCCCAGGAGGAGGCCTTGCATATTCTCGGTTTCCAGCCTCCATTTGAAGATATCAAGTTTGGACCTTTTACTGGGAATGCCACTTTAATGAGATGGTTCAGACAGATCAATGACCATTTCCGTGTTCGAGGATGCTCTTATATTCTATATAAACCCCATGGGAAGCACAAGACAGCAGGAGAGACAGCTGAAGGAGCTTTGCTTAAGCTGACCCAGGGATTGAGAGATGAATCTATGGCCTATATTTACCACTGTCAGAACCACTACTTCTGCCCTGTGGGCTTCGAAGCTACACCATTAAAAGCAGCCAAAGCTTACAGggGACCACTTGCTCTCAATGAAATGGAGCATTGGATTCTTATTGGGGAGCCAAGCAGGAAACATCCTGCCATCCActgtaaaaaGTGGGCAGATATTGTGACTGACCTGAACACACAGAACCCAGAATACTTGGACATTCGCCATACAGAAAGAGGCATTCAGTTTCGGAAAACCAAAAAGGTGGGAGGCAACCTACACTGTCTCATGGCCTTCCAAAGGGTGAACTGGCAGAAAATCGGACCTTGGGCACTAAACCTGGAGAATCTGAGGCATGATAACCACCAACAGGGAGCAGATCACAGGAGCCAGACTTCAGCAGGGGAGGCTGTAGACGATGGCGAGACCAAACACGGGCACCTGGGCCGCTCTCACTGCACGGGGAATCAGAAATCAGAGCAAGCGTGGAAACGGATCTCCAATACTGCAGAGTACAGCCACAGAGGCTGCCCCGACAGCGATCTGGATGAGGACATCGCTGACTGAAAATGAAGTGGTTACTTCTCCA
>XM_034311024.1
GTTAAAGCAAACCGCGCAGAGGAGGAGGGGGGAATTGCTTCATGCTCACCTTTCTCAGCCTTTTAGCAGACTCATCATATTGAATAATTAGTGGTTTTGCTGTACTTATAAACTCGTAACTTATCAAATTTTAAGTCAGAATTGCTCGTCCTCGGCATCgcatatttgtcatattttttaatgtatttgaacAACCCTCCGTTATTTTCCGTGTGGTATAAACCAGCGGAGCCCCTTTAACAGAAGGCCAGTGTATTGAGAAGtcgtgttgtttttttaatcgttTGCTCATGCGGTGTTTATAAGTTGAAGGTACGTGGGCATATCCCgtttttatttagattatttagGATTAGACGCACGTATGTGTTATATTTTTGGACATTTCCACAGTCTCCTGGCTGAACATCAGGTCGTCCCCTTATAGGGGCCAAGGAGTCACATCAGTCCAAAACCAACCAACAGGCAATCTTCTTGTCATCCAAGTGTTCAATGCCTAACACTGCAGAAAGTGAAGGCGGTAACATATCTGGTGCCAAGGATCCGGCACCCCCATCACGGTTGCCGGGCCAAGACGATGAGCGCGGCTTCCTGAACTCATTCAGCCGTGATACGCTGCGCGCCAGACGGGCCTCCAGCGCTGAGCTGCAGCTCCCGTGGACATGCCCGGTCACACATTCCCGGGAGAAATTCTACACAGTGTGCTCTGATTATGCACTGCTCAACCAAGCCCGTCCAATCCTCACCCCCAGAGATGTTCCCCAGTCCAGCCATGACAGCAGCACACCACTGAGTCAATCAAACACCATCACTATCTCCCAGGGTCAGGCTGGAGGAATCCATACACCTTCAGGTGATGCCTGTGATATAGAAGACACATTCTCCAGCAACTCCAAGCCCATTTTAGCCTGGGAGATCGACACCACTGACTTTGATGCCGTTTTAACCCGAAAAGCCAGGACAGGTAATATAAAGAAATTTGGCTTGAAGAAAATGAAGTCATCTGACCGATCGAGCAGAAATGTGCTAGATCTTCCACCACAAGCGTCTCTGGAAGAAATCAAACAGAGGAAAGTCCTGGACTTGCGCAGATGGTACTGCATCAGCCGCCCTCAGTATAAAACTTCATGTGGCATTTCCTCACTCGTCTCTTGCTGGAACTTTCTGTACAGTACCCTTGGAGCTGGAAGcCTTCCACCCATTTCCCAGGAGGAGGCCTTGCATATTCTCGGTTTCCAGCCTCCATTTGAAGATATCAAGTTTGGACCTTTTACTGGGAATGCCACTTTAATGAGATGGTTCAGACAGATCAATGACCATTTCCGTGTTCGAGGATGCTCTTATATTCTATATAAACCCCATGGGAAGCACAAGACAGCAGGAGAGACAGCTGAAGGAGCTTTGCTTAAGCTGACCCAGGGATTGAGAGATGAATCTATGGCCTATATTTACCACTGTCAGAACCACTACTTCTGCCCTGTGGGCTTCGAAGCTACACCATTAAAAGCAGCCAAAGCTTACAGggGACCACTTGCTCTCAATGAAATGGAGCATTGGATTCTTATTGGGGAGCCAAGCAGGAAACATCCTGCCATCCActgtaaaaaGTGGGCAGATATTGTGACTGACCTGAACACACAGAACCCAGAATACTTGGACATTCGCCATACAGAAAGAGGCATTCAGTTTCGGAAAACCAAAAAGGTGGGAGGCAACCTACACTGTCTCATGGCCTTCCAAAGGGTGAACTGGCAGAAAATCGGACCTTGGGCACTAAACCTGGAGAATCTGAGGCATGATAACCACCAACAGGGAGCAGATCACAGGAGCCAGACTTCAGCAGGGGAGGCTGTAGACGATGGCGAGACCAAACACGGGCACCTGGGCCGCTCTCACTGCACGGGGAATCAGAAATCAGAGCAAGCGTGGAAACGGATCTCCAATACTGCAGAGTACAGCCACAGAGGCTGCCCCGACAGCGATCTGGATGAGGACATCGCTGACTGAAAATGAAGTGGTTACTTCTCCA

Function

symbol description
bivm Orthologous to human BIVM (basic, immunoglobulin-like variable motif containing).

NR:

description
PREDICTED: basic immunoglobulin-like variable motif-containing protein isoform X1

GO: NA

KEGG:

id description
K10846 ERCC5, XPG, RAD2; DNA excision repair protein ERCC-5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926703.2 False 1913 mRNA 0.49 10 20250115 20258553
XM_034311024.1 True 2029 mRNA 0.48 10 20250115 20258553

Neighbor

gene id symbol gene type direction distance location
nme7 nme7,LOC107659027,LOC107731836,LOC107732015,LOC107692347,LOC107590639 coding downstream 4107 20207755 ~ 20246008 (-)
dpt dpt coding downstream 66821 20172128 ~ 20183294 (-)
zbtb11 zbtb11,LOC106576566 coding downstream 93956 20146385 ~ 20156159 (-)
dipk1ab fam69a,LOC108272054,LOC108427695,LOC103026455,LOC107590645,LOC107659006,LOC107566484 coding downstream 107858 20112945 ~ 20142257 (-)
evi5b evi5,LOC108427692 coding downstream 148917 20038950 ~ 20101198 (-)
tmem131 tmem131,LOC107659030 coding upstream 6760 20265313 ~ 20310226 (-)
mrpl47 mrpl47 coding upstream 66305 20324858 ~ 20328459 (-)
lrrc7 lrrc7,LOC107709201 coding upstream 424994 20683547 ~ 20814820 (-)
zgc:153311 LOC108271850 coding upstream 625972 20884525 ~ 20886833 (-)
lurap1 LOC108271563 coding upstream 704836 20963389 ~ 20978637 (-)
G30423 NA non-coding downstream 1606 20248166 ~ 20248509 (-)
G30422 NA non-coding downstream 2778 20247111 ~ 20247337 (-)
G30421 NA non-coding downstream 3244 20246605 ~ 20246871 (-)
G30412 NA non-coding downstream 42383 20199533 ~ 20207732 (-)
LOC117599142 NA non-coding downstream 50599 20197220 ~ 20199516 (-)
G30428 NA non-coding upstream 56285 20314838 ~ 20315511 (-)
G30507 NA non-coding upstream 145656 20404209 ~ 20404408 (-)
G30550 NA non-coding upstream 221559 20480112 ~ 20480726 (-)
G30551 NA non-coding upstream 222627 20481180 ~ 20482701 (-)
G30552 NA non-coding upstream 233931 20492484 ~ 20495517 (-)
glmnb LOC108272089 other downstream 236021 20003359 ~ 20014094 (-)
trnap-ugg NA other downstream 1432917 18817127 ~ 18817198 (-)
LOC113537624 NA other downstream 1433303 18794025 ~ 18816812 (-)
trnag-ucc NA other downstream 1433785 18816259 ~ 18816330 (-)
zgc:153916 LOC108271870,LOC108413223,LOC107749976 other downstream 2054487 18148228 ~ 18195628 (-)
pex5la pex5l,pex5la,LOC107709207 other upstream 101169 20359722 ~ 20429325 (-)
lepr lepr other upstream 1022811 21281364 ~ 21317823 (-)
raver2 raver2 other upstream 1190993 21449546 ~ 21531428 (-)
ccdc17 ccdc17 other upstream 2313879 22572432 ~ 22581943 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other upstream 2323750 22582303 ~ 22593861 (-)

Expression


Co-expression Network