actl6a (actl6a)


Basic Information

Item Value
gene id actl6a
gene name actl6a
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20315025 ~ 20324579 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927129.2
CCGGAAGGGGGCGACGCTGTACTTCTGAGTTCAGATCACCTCCGTTATTGTTCACCACAGAGGAAGATGTCCGTCTCGTTTCCTTTGTTGTGATGAATTCCTTATTataaaagaagaagacaaaatTGCGGATTTAGATTTAATCAGGGAcggtttagttttatttgtgatAAGTAAATCTACATCCATCATTGGCTATAATGAGTGGAGGAGTGTATGGCggggACGAGGTTGGCGCGCTGGTGTTTGATATCGGCTCCTACTCCGTGAGGGCTGGTTATGCTGGAGAGGACTGCCCCAAGGCTGACTTCCCCACCGTGATTGGCGTGACTGTGGACAGGGAAGATGGCACTACACCGATGGAAACAGATGGGGATAAGGGCAAGCAAAGTGGAACGACATACTACATCGATACCAACCAGCTCAGGGTGCCACGGGAAAACATGGAGGTCATGTCACCTCTTAAAAATGGCATGATTGAAGACTGGGACAGCTTTCAGGCCATTTTGGACCACACCTACAGAATGCACTTCAAATCCGAGCCTAGCTTGCATCCTGTGCTGATGTCAGAAGCCTCTTGGAACACACGAGCCAAGAGGGAGAAGCTGACAGAGCTTATGTTTGAGCATTACAACATCCCTGCTTTCTTCTTGTGTAAAACAGCCGTCCTGTCTGCATTTGCAAATGGACGATCCACTGGTTTGGTGTTAGACAGCGGTGCGACGCACACGACTGCTATTCCAGTGCATGATGGTTATGTCCTGCAGCAAGGCATTGTCAAGTCCCCACTTGCAGGTGACTTCATGAGCATGCAGTGTAGAGAGCTGTTTCAGGAATTAAATGTCGAAATCATTCCCCCATACATGATTGCATCAAAGGATTCAGTACGTGAAGGTGCACCAGCCAGctggaagaagaaagagaaactaCCTCAAGTTACTCGCTCATGGCATAACTACATGTGTAATACTGTTATTCAAGATTTCCAGGCCTCAGTCTTGCAGGTTTCAGATTCACCTTATGATGAACAGGTGGCTGTTCAGATGCCGACTGTTCACTATGAGCTGCCTAATGGCTACAACTGTGACTTTGGAGCTGAACGACTGAAGATTCCTGAGGGGCTTTTTGACCCTTCTAATGCAAAGggCCTGTCAGGAAACACCATGCTTGGAGTAGGCCATGTTGTGACCACCAGTGTTGGCATGTGTGACGTTGATATCCGACCAggtCTGTATGGCAGTGTGATAGTTACTGGAGGAAACACTCTCATCCAAGGATTTACAGACAGACTAAACAGAGAACTGTCTCAGAAGACACCACCGAGTATGCGCTTGAAGTTAATAGCCAACAATACGACTCTGGAGCGCAGGTTCAGTGCCTGGATCGGAGGGTCTATCCTGGCATCACTGGGAACCTTCCAACAAATGTGGATTTCCAAGCAGGAGTATGAGGAAGGAGGGAAGCAGTGTGTAGAGAGGAAGTGCCCTTGACCAACTCCAGCTTTTTTTGCCATTTGATtctttaactaaaaaaaagaaaaaaaaaagtttctggtAGAACAGGCCTTCTTA

Function

symbol description
actl6a Predicted to enable chromatin binding activity. Predicted to be involved in chromatin organization; nervous system development; and regulation of transcription by RNA polymerase II. Predicted to be part of NuA4 histone acetyltransferase complex and SWI/SNF complex. Is expressed in ventricular zone. Orthologous to human ACTL6A (actin like 6A).

NR:

description
PREDICTED: actin-like protein 6B isoform X1

GO: NA

KEGG:

id description
K11340 ACTL6A, INO80K; actin-like protein 6A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927129.2 True 1571 mRNA 0.47 14 20315025 20324579

Neighbor

gene id symbol gene type direction distance location
si:ch211-201h21.5 LOC108271508,LOC108427703 coding upstream 49532 20258821 ~ 20265493 (+)
zgc:172121 LOC108271828 coding upstream 65567 20245574 ~ 20249458 (+)
atp1b1a atp1b1 coding upstream 107272 20199525 ~ 20207753 (+)
rpl5b LOC103397662,LOC103368809,LOC104921761,LOC101078338,LOC107590646 coding upstream 202506 20104204 ~ 20112519 (+)
LOC113537321 NA coding upstream 204800 20110130 ~ 20110225 (+)
ndufb5 ndufb5,LOC107709185,LOC107659010,LOC107692354 coding downstream 4864 20329443 ~ 20333691 (+)
usp13 usp13,LOC107659032 coding downstream 11052 20335631 ~ 20359651 (+)
pde6d pde6d coding downstream 142570 20467149 ~ 20472065 (+)
phb2b LOC108427714,LOC107692360,LOC102296991,LOC102211951 coding downstream 148692 20473271 ~ 20480074 (+)
ptmaa NA coding downstream 188210 20512789 ~ 20516555 (+)
G30382 nme7,LOC107732015 non-coding upstream 80253 20233975 ~ 20234772 (+)
G30288 evi5 non-coding upstream 275051 20037735 ~ 20039974 (+)
G30224 NA non-coding upstream 396657 19918145 ~ 19918368 (+)
G30049 NA non-coding upstream 494654 19820142 ~ 19820371 (+)
G29999 NA non-coding upstream 749002 19565810 ~ 19566023 (+)
G30436 NA non-coding downstream 9164 20333743 ~ 20334121 (+)
G30442 NA non-coding downstream 36011 20360590 ~ 20361838 (+)
G30445 pex5l non-coding downstream 43234 20367813 ~ 20368152 (+)
G30448 NA non-coding downstream 48127 20372706 ~ 20373062 (+)
G30455 NA non-coding downstream 56191 20380770 ~ 20380982 (+)
LOC113543059 c11h1orf146 other upstream 294799 20000046 ~ 20020226 (+)
smx5 lsm2,LSM2,smx5 other upstream 777828 19534345 ~ 19537197 (+)
LOC113533886 espnl other upstream 1227814 19061097 ~ 19087211 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other upstream 1366288 18932683 ~ 18948737 (+)
trnai-aau NA other upstream 1497550 18817402 ~ 18817475 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other downstream 212394 20536973 ~ 20658080 (+)
insl5a insl5 other downstream 690259 21014838 ~ 21017867 (+)
tmem69 tmem69 other downstream 2273016 22597595 ~ 22603436 (+)
uhmk1 uhmk1,LOC107692420 other downstream 3309027 23633606 ~ 23653555 (+)
G32684 NA other downstream 3695799 24020378 ~ 24021036 (+)

Expression


Co-expression Network