Gene
RNA
| Item | Value |
|---|---|
| gene id | mrpl47 |
| gene name | mrpl47 |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 20324858 ~ 20328459 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| symbol | description |
|---|---|
| mrpl47 | Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial translation. Predicted to act upstream of or within translation. Predicted to be located in mitochondrial ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Is expressed in immature eye; optic tectum; and somite. Orthologous to human MRPL47 (mitochondrial ribosomal protein L47). |
| description |
|---|
| PREDICTED: 39S ribosomal protein L47, mitochondrial |
| id | name | namespace |
|---|---|---|
| GO:0005840 | ribosome | cellular_component |
| id | description |
|---|---|
| K17428 | MRPL47, NCM1; large subunit ribosomal protein L47 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_026927143.2 | True | 1229 | mRNA | 0.41 | 7 | 20324858 | 20328459 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| tmem131 | tmem131,LOC107659030 | coding | downstream | 14632 | 20265313 ~ 20310226 (-) |
| LOC113534100 | bivm,LOC107548643,LOC104949108 | coding | downstream | 66305 | 20250115 ~ 20258553 (-) |
| nme7 | nme7,LOC107659027,LOC107731836,LOC107732015,LOC107692347,LOC107590639 | coding | downstream | 78850 | 20207755 ~ 20246008 (-) |
| dpt | dpt | coding | downstream | 141564 | 20172128 ~ 20183294 (-) |
| zbtb11 | zbtb11,LOC106576566 | coding | downstream | 168699 | 20146385 ~ 20156159 (-) |
| lrrc7 | lrrc7,LOC107709201 | coding | upstream | 355088 | 20683547 ~ 20814820 (-) |
| zgc:153311 | LOC108271850 | coding | upstream | 556066 | 20884525 ~ 20886833 (-) |
| lurap1 | LOC108271563 | coding | upstream | 634930 | 20963389 ~ 20978637 (-) |
| ttc4 | ttc4,LOC107709194 | coding | upstream | 661226 | 20989685 ~ 20994441 (-) |
| pars2 | pars2 | coding | upstream | 667629 | 20996088 ~ 20999389 (-) |
| G30428 | NA | non-coding | downstream | 9347 | 20314838 ~ 20315511 (-) |
| G30423 | NA | non-coding | downstream | 76349 | 20248166 ~ 20248509 (-) |
| G30422 | NA | non-coding | downstream | 77521 | 20247111 ~ 20247337 (-) |
| G30421 | NA | non-coding | downstream | 77987 | 20246605 ~ 20246871 (-) |
| G30412 | NA | non-coding | downstream | 117126 | 20199533 ~ 20207732 (-) |
| G30507 | NA | non-coding | upstream | 75750 | 20404209 ~ 20404408 (-) |
| G30550 | NA | non-coding | upstream | 151653 | 20480112 ~ 20480726 (-) |
| G30551 | NA | non-coding | upstream | 152721 | 20481180 ~ 20482701 (-) |
| G30552 | NA | non-coding | upstream | 164025 | 20492484 ~ 20495517 (-) |
| G30561 | NA | non-coding | upstream | 178693 | 20507152 ~ 20507352 (-) |
| glmnb | LOC108272089 | other | downstream | 310764 | 20003359 ~ 20014094 (-) |
| trnap-ugg | NA | other | downstream | 1507660 | 18817127 ~ 18817198 (-) |
| LOC113537624 | NA | other | downstream | 1508046 | 18794025 ~ 18816812 (-) |
| trnag-ucc | NA | other | downstream | 1508528 | 18816259 ~ 18816330 (-) |
| zgc:153916 | LOC108271870,LOC108413223,LOC107749976 | other | downstream | 2129230 | 18148228 ~ 18195628 (-) |
| pex5la | pex5l,pex5la,LOC107709207 | other | upstream | 31263 | 20359722 ~ 20429325 (-) |
| lepr | lepr | other | upstream | 952905 | 21281364 ~ 21317823 (-) |
| raver2 | raver2 | other | upstream | 1121087 | 21449546 ~ 21531428 (-) |
| ccdc17 | ccdc17 | other | upstream | 2243973 | 22572432 ~ 22581943 (-) |
| gpbp1l1 | gpbp1l1,LOC107731630,LOC107551044,LOC107725200 | other | upstream | 2253844 | 22582303 ~ 22593861 (-) |
