LOC113534455 (kcna3a,LOC108271529,LOC107554199,LOC107708155,LOC107685799,LOC107729772,LOC107666172,LOC107577939,LOC105907781)


Basic Information

Item Value
gene id LOC113534455
gene name kcna3a,LOC108271529,LOC107554199,LOC107708155,LOC107685799,LOC107729772,LOC107666172,LOC107577939,LOC105907781
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13570759 ~ 13578479 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927279.2
CCGGCTGTAAAGCATCCCCGCGCGCGCGCTGCTTCGCGCCACCCGATGGCTTTTCTCCTAGGGAAATGCATCAATCACCCCTGCGTGCTCGAAAAGCTTAATGGGTTTgcgttgttgttttgaaacgAAAACCCGATCGCGCCATTTTCATGTGAAAGGCTTTCACGCGCGCTCGGGGTTGCAGGCTGTCACTTGGCTGTGTGCCTGTGAAGTGTTTCGCGCTCGACTGGAATCGGTTGCCTGCTCTTTCAACACGTgctctgctgttttgttttacgGAAACGCTGTTGGCATTGTCATTGAGAAAATTTCTGGTCGGTGACTGGATGCATTCCATTGAACGGGGTTGCTGTTTCAAATTGTGAAATTGATTTCTTTCCTGAGAAATTTCTACCGACGAATACCTCGCTGGATTTTATTCACTTTGTATGAATGGGTGTATTTtcgtagaaaaaaaaaagtgagactGGGAATTGATGTTTATGCCAACTTAGGTTCTGATTTGGCGAGGATGCGTGAAGCGCACGCGCGCTGTGGGCGGGAATAGACGCGCGTTTATAAAGGACGCTGCGCGCGCCGTGAGGCGGCGACACCGCGCGGAAACGGCTGTCAGGAGCGCAGAGGACTGAGTGAAGACGCGAGGGAAGTCTTTTTTAATTCAGTCCAAGCTGGGTGGGAGAGGCGCGCCTCTCTCGGGCCCCTTGTCGCCTCTCCCCACCCCCTCGGTATGGATGAACACTTCAACCTCATAGACTCGCCGTCGACGCGCCACAGGGGGAACAACGCCGAGAATCACGGCTACGCGGAAACAGAAAAGGGCAGCATGACGGTGATGGCGGCGGAGCTGCTGGAGGAATCAGCCGCGCTGCCCGGCCACCTGTCGCTGGATCGATATGAGGCGGAGCACGAGTGCTGCGAGAGAGTGGTCATCAACATCTCGGGCCTGCGCTTCGAGACGCAGCTCAAAACTTTCAACCAATTTCCGGACACCTTGCTCGGCGACCCGAAAAAGAGGATGCGCTACTTCGATCCGCTCAGGAACGAGTACTTTTTCGACAGGAATCGTCCAAGCTTCGACGCCATCCTCTACTACTACCAGTCGGGCGGGCGCATCCGGAGACCCGTCAACGTGCCCATAGACATCTTCTCGGAGGAGATCCGCTTTTATCAGCTTGGCGAGGAGGCGATGGAGAAATTTCGGGAGGACGAGGGTTTTATCAAAGAAGAGGAGCGCCCCTTGCCTAGCCATGAGTTCCAGAGGCAAGTCTGGCTTTTATTTGAGTACCCGGAGAGCTCAGGCCCGGCCAGGGGCATCGCCATCGTGTCAGTACTGGTCATTCTCATCTCCATCGTCATTTTCTGTCTGGAAACTTTGCCAGAGTTTAGGGACGATAAGGATCCGGTCACTGTAGCGCCTGTAATAAACGGAACTGGCCCGTACGGGTCAGGCTCTTTTACCGACCCGTTTTTTGTGATCGAGACGCTTTGCATAATTTGGTTCTCCTTCGAGCTGCTTGTCCGCTTCTTCGCCTGCCCCAGCAAAGCCACCTTTTCCAAAAACATCATGAACATAATCGACATCGTGGCTATAATTCCATACTTCATCACGCTGGGTACAGAGTTGGCTGAAAGACAGGGCAATGGGCAGCAGGCCATGTCCCTGGCCATCCTGCGCGTGATCCGCCTAGTGCGAGTGTTTCGCATCTTCAAGCTGTCGCGCCACTCCAAGGGCCTCCAGATCCTTGGGCAGACGCTCAAAGCCAGCATGCGGGAACTTGGcttgcttatttttttcctttttatcgGGGTCATTTTATTCTCCAGCGCTGTGTACTTCGCAGAGGCGGACGACCCAGCCTCCAGCTTCAGCAGCATCCCGGACGCGTTCTGGTGGGCCGTGGTTACCATGACTACGGTGGGCTACGGAGACATGCACCCGGTGACCATCGGCGGGAAGATCGTCGGCTCGCTGTGTGCCATCGCTGGGGTTTTGACGATCGCGCTGCCCGTGCCCGTCATCGTCTCCAATTTCAACTACTTCTACCACCGGGAGACGGACGGCGAGGAGCACGCGCAGTACCTGCACACGGGCAGCTGCGAGCATCTCGACTCCGCGGAGGAGATGAAACGGACGCGGAGCACCTCGTCACTCAGCAAATCGGAGTACATGGTGATAGAGGAGGGCATAAACAGCGGCTTTAAGCAGGCCAACTACACAAACCAAAACAATCAGAACTGCGTAAACATCAAAAAGATTTTCACTGACGTGTAAATCAAGCGCAGGTCCAGTCGGCGATGCTCCTCAGATCACCTCCACTTTACTCTAGGATTTTCTTCATGCAGACCCTGTGCGCGGACTACAACCTGCTGGCCTGCAGAGGATCATGCATTCTCTATAGCGGTTAAAAGTGGACGAAGGGCGGGTCAGGGACGTTAAATAACCTACAAACAATAATCAGTCGTCTGTGATTGTCCGTCTGCATTTGTTCTCAGTGTTATATAGCCTATATAATCGTCATCATACGTATTGGCAATATATTACAATCAAACAAATGCCTGTTAATGTGATGAAACGCTATATTTTCGGAGGTCACGTGTTAGTGTCACATGAATTTTGTTAGTATATAAGTGCAGATTCCATTTTAACAAACTGAACGTCTGTGGATGAACCATCAATctgtcaaatatatatatatagcctattgtatgtatttattaatcaaaCCGCCTTTACCTATACCAAATAACTATGTGTTATACAAAATGAAAGGATTGGTTGTTATAGCtcaaaaaaatgctttattttgtgtagaaaaaaaGGTGTGTGAAAACAGTTATCCCCAAATCGATGTTAAGTGCTGTAATCAGCCACATAAAAAGCTAAGTTTCCCCCAAATTTCTATTTATCATCTCCCTGTAGAATTCCCCACGATTAGCATTCGGGAAAAGACACAGTAGGTAGGCATCAAAAGAAAACACTGTCGTTTCTTGCATGAGAAAACAGGACTGGGCTGAGCACGCGCGGATTCGCCTCCCCGTCGAGACCCCTGGCTCCGCCCTATGATGCAGTCTCCATAGCGACCACAGTTTCCTGGGAGGTAAAGATCAGGACCTTGTACTATTAAAGATTTCAGCTGATGGGCATCAAGCTGACCTGTGGCTCTATTCCAAACTGGGAAGAGAAGTTTTAAAGcAGATACAGATCCAGACTTATCAACAACCACTAGGCACAGGACAAAGCACAGGACAAAGCACACAAACTCATCTAAGAGATGTCCGCATTGTTGTATATCACCTTCTCATCATATGAAGACTCTAGAAGTGGCCTTGTTCATTGGATACACTGCCAGATTGAATGTATATAACCAATCAGACAGACACTCAAGGGACTGAAGCTGATTACCTTTGACATAACTGCCTACTGCAGTGAGATATATATTAGTGAGGATGGTTTTTGGTATGTTCTTCATGTATTCACCGTTTGTGCTGTTTTCAAACCAGATGTCTGTGTATAAGTGTGTTGTTATTAAGGCAATGTTTACGTATTAACTATATTAGACATTCCAAGCACTGAAGCACCAAAACTCTCAATGTTTTTTGATGAGATGAACTAATAAAATGGGTTACAAACA
>XM_026927289.2
CCGGCTGTAAAGCATCCCCGCGCGCGCGCTGCTTCGCGCCACCCGATGGCTTTTCTCCTAGGGAAATGCATCAATCACCCCTGCGTGCTCGAAAAGCTTAATGGGTTTgcgttgttgttttgaaacgAAAACCCGATCGCGCCATTTTCATGTGAAAGGCTTTCACGCGCGCTCGGGGTTGCAGGCTGTCACTTGGCTGTGTGCCTGTGAAGTGTTTCGCGCTCGACTGGAATCGGTTGCCTGCTCTTTCAACACGTgctctgctgttttgttttacgGAAACGCTGTTGGCATTGTCATTGAGAAAATTTCTGGTCGGTGACTGGATGCATTCCATTGAACGGGGTTGCTGTTTCAAATTGTGAAATTGATTTCTTTCCTGAGAAATTTCTACCGACGAATACCTCGCTGGATTTTATTCACTTTGTATGAATGGGTGTATTTtcgtagaaaaaaaaaagtgagactGGGAATTGATGTTTATGCCAACTTAGGTTCTGATTTGGCGAGGATGCGTGAAGCGCACGCGCGCTGTGGGCGGGAATAGACGCGCGTTTATAAAGGACGCTGCGCGCGCCGTGAGGCGGCGACACCGCGCGGAAACGGCTGTCAGGAGCGCAGAGGACTGAGTGAAGACGCGAGGGAAGTCTTTTTTAATTCAGTCCAAGCTGGGTGGGAGAGGCGCGCCTCTCTCGGGCCCCTTGTCGCCTCTCCCCACCCCCTCGGTATGGATGAACACTTCAACCTCATAGACTCGCCGTCGACGCGCCACAGGGGGAACAACGCCGAGAATCACGGCTACGCGGAAACAGAAAAGGGCAGCATGACGGTGATGGCGGCGGAGCTGCTGGAGGAATCAGCCGCGCTGCCCGGCCACCTGTCGCTGGATCGATATGAGGCGGAGCACGAGTGCTGCGAGAGAGTGGTCATCAACATCTCGGGCCTGCGCTTCGAGACGCAGCTCAAAACTTTCAACCAATTTCCGGACACCTTGCTCGGCGACCCGAAAAAGAGGATGCGCTACTTCGATCCGCTCAGGAACGAGTACTTTTTCGACAGGAATCGTCCAAGCTTCGACGCCATCCTCTACTACTACCAGTCGGGCGGGCGCATCCGGAGACCCGTCAACGTGCCCATAGACATCTTCTCGGAGGAGATCCGCTTTTATCAGCTTGGCGAGGAGGCGATGGAGAAATTTCGGGAGGACGAGGGTTTTATCAAAGAAGAGGAGCGCCCCTTGCCTAGCCATGAGTTCCAGAGGCAAGTCTGGCTTTTATTTGAGTACCCGGAGAGCTCAGGCCCGGCCAGGGGCATCGCCATCGTGTCAGTACTGGTCATTCTCATCTCCATCGTCATTTTCTGTCTGGAAACTTTGCCAGAGTTTAGGGACGATAAGGATCCGGTCACTGTAGCGCCTGTAATAAACGGAACTGGCCCGTACGGGTCAGGCTCTTTTACCGACCCGTTTTTTGTGATCGAGACGCTTTGCATAATTTGGTTCTCCTTCGAGCTGCTTGTCCGCTTCTTCGCCTGCCCCAGCAAAGCCACCTTTTCCAAAAACATCATGAACATAATCGACATCGTGGCTATAATTCCATACTTCATCACGCTGGGTACAGAGTTGGCTGAAAGACAGGGCAATGGGCAGCAGGCCATGTCCCTGGCCATCCTGCGCGTGATCCGCCTAGTGCGAGTGTTTCGCATCTTCAAGCTGTCGCGCCACTCCAAGGGCCTCCAGATCCTTGGGCAGACGCTCAAAGCCAGCATGCGGGAACTTGGcttgcttatttttttcctttttatcgGGGTCATTTTATTCTCCAGCGCTGTGTACTTCGCAGAGGCGGACGACCCAGCCTCCAGCTTCAGCAGCATCCCGGACGCGTTCTGGTGGGCCGTGGTTACCATGACTACGGTGGGCTACGGAGACATGCACCCGGTGACCATCGGCGGGAAGATCGTCGGCTCGCTGTGTGCCATCGCTGGGGTTTTGACGATCGCGCTGCCCGTGCCCGTCATCGTCTCCAATTTCAACTACTTCTACCACCGGGAGACGGACGGCGAGGAGCACGCGCAGTACCTGCACACGGGCAGCTGCGAGCATCTCGACTCCGCGGAGGAGATGAAACGGACGCGGAGCACCTCGTCACTCAGCAAATCGGAGTACATGGTGATAGAGGAGGGCATAAACAGCGGCTTTAAGCAGGCCAACTACACAAACCAAAACAATCAGAACTGCGTAAACATCAAAAAGATTTTCACTGACGTGTAAATCAAGCGCAGGTCCAGTCGGCGATGCTCCTCAGATCACCTCCACTTTACTCTAGGATTTTCTTCATGCAGACCCTGTGCGCGGACTACAACCTGCTGGCCTGCAGAGGATCATGCATTCTCTATAGCGGTTAAAAGTGGACGAAGGGCGGGTCAGGGACGTTAAATAACCTACAAACAATAATCAGTCGTCTGTGATTGTCCGTCTGCATTTGTTCTCAGTGTTATATAGCCTATATAATCGTCATCATACGTATTGGCAATATATTACAATCAAACAAATGCCTGTTAATGTGATGAAACGCTATATTTTCGGAGGTCACGTGTTAGTGTCACATGAATTTTGTTAGTATATAAGTGCAGATTCCATTTTAACAAACTGAACGTCTGTGGATGAACCATCAATctgtcaaatatatatatatagcctattgtatgtatttattaatcaaaCCGCCTTTACCTATACCAAATAACTATGTGTTATACAAAATGAAAGGATTGGTTGTTATAGCtcaaaaaaatgctttattttgtgtagaaaaaaaGGTGTGTGAAAACAGTTATCCCCAAATCGATGTTAAGTGCTGTAATCAGCCACATAAAAAGCTAAGTTTCCCCCAAATTTCTATTTATCATCTCCCTGTAGAATTCCCCACGATTAGCATTCGGGAAAAGACACAGTAGGTAGGCATCAAAAGAAAACACTGTCGTTTCTTGCATGAGAAAACAGGACTGGGCTGAGCACGCGCGGATTCGCCTCCCCGTCGAGACCCCTGGCTCCGCCCTATGATGCAGTCTCCATAGCGACCACAGTTTCCTGGGAGGTAAAGATCAGGACCTTGTACTATTAAAGATTTCAGCTGATGGGCATCAAGCTGACCTGTGGCTCTATTCCAAACTGGGAAGAGAAGTTTTAAAGATACAGATCCAGACTTATCAACAACCACTAGGCACAGGACAAAGCACAGGACAAAGCACACAAACTCATCTAAGAGATGTCCGCATTGTTGTATATCACCTTCTCATCATATGAAGACTCTAGAAGTGGCCTTGTTCATTGGATACACTGCCAGATTGAATGTATATAACCAATCAGACAGACACTCAAGGGACTGAAGCTGATTACCTTTGACATAACTGCCTACTGCAGTGAGATATATATTAGTGAGGATGGTTTTTGGTATGTTCTTCATGTATTCACCGTTTGTGCTGTTTTCAAACCAGATGTCTGTGTATAAGTGTGTTGTTATTAAGGCAATGTTTACGTATTAACTATATTAGACATTCCAAGCACTGAAGCACCAAAACTCTCAATGTTTTTTGATGAGATGAACTAATAAAATGGGTTACAAACA

Function

symbol description
kcna3a Orthologous to human KCNA3 (potassium voltage-gated channel subfamily A member 3).

NR:

description
PREDICTED: potassium voltage-gated channel subfamily A member 3-like

GO: NA

KEGG:

id description
K04876 KCNA3, KV1.3; potassium voltage-gated channel Shaker-related subfamily A member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927279.2 True 3632 mRNA 0.49 3 13570759 13578479
XM_026927289.2 False 3629 mRNA 0.49 3 13570759 13578479

Neighbor

gene id symbol gene type direction distance location
slc25a55a LOC108271946,LOC108427598,LOC106566040,LOC107554200,LOC107708156,LOC107685798 coding upstream 55230 13510328 ~ 13515529 (+)
sycp1 sycp1 coding upstream 80682 13467442 ~ 13490077 (+)
LOC113535652 LOC108272179,LOC103032899,LOC108427596,LOC107666031 coding upstream 104438 13456562 ~ 13466321 (+)
LOC113543455 LOC108272164,LOC108272179,LOC108427594 coding upstream 122630 13441193 ~ 13448129 (+)
mov10a mov10,LOC108427590 coding upstream 356196 13200052 ~ 13214563 (+)
LOC113534264 LOC108271528,LOC103030675,LOC108427602,LOC107685800,LOC100537815,LOC107554174,LOC107596796,LOC107666037,LOC107729734 coding downstream 6613 13585092 ~ 13590794 (+)
LOC113537237 LOC108271567,LOC108427546,LOC107708091,LOC107596858,LOC107666053,LOC107729737,LOC107554173,LOC107685839 coding downstream 18370 13596849 ~ 13612881 (+)
LOC113541997 NA coding downstream 41845 13620324 ~ 13624171 (+)
LOC113528606 LOC108271940 coding downstream 58518 13636997 ~ 13640777 (+)
arf3b arf3,ARF3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878 coding downstream 72914 13651393 ~ 13658672 (+)
G26749 NA non-coding upstream 53356 13434904 ~ 13517403 (+)
LOC113533310 NA non-coding upstream 196263 13351846 ~ 13374496 (+)
G26266 NA non-coding upstream 662665 12855396 ~ 12908094 (+)
G26233 NA non-coding upstream 770905 12799618 ~ 12799854 (+)
G26231 NA non-coding upstream 772730 12797696 ~ 12798029 (+)
G26848 NA non-coding downstream 48002 13626481 ~ 13629466 (+)
G26873 NA non-coding downstream 243905 13822384 ~ 13825226 (+)
G26875 NA non-coding downstream 255760 13834239 ~ 13836347 (+)
G26884 NA non-coding downstream 294836 13873315 ~ 13873523 (+)
G26921 NA non-coding downstream 422452 14000931 ~ 14054690 (+)
tshba tshb,LOC108271948 other upstream 64755 13490161 ~ 13506004 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other upstream 238582 13265788 ~ 13332177 (+)
si:ch211-286o17.1 NA other upstream 819482 12728993 ~ 12751277 (+)
G25908 LOC108272198 other upstream 1043268 12526170 ~ 12527491 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other upstream 1357102 12204441 ~ 12213657 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other downstream 1700343 15278822 ~ 15304494 (+)
LOC113534559 LOC108272085 other downstream 2210147 15788626 ~ 15790444 (+)
slc2a11a LOC108271728,LOC108440316 other downstream 2504810 16083289 ~ 16103248 (+)
mustn1a LOC108272082,LOC108439813 other downstream 2602692 16181171 ~ 16182309 (+)
tomm6 tomm6 other downstream 2819766 16398245 ~ 16401111 (+)

Expression


Co-expression Network