ptmaa


Basic Information

Item Value
gene id ptmaa
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20512789 ~ 20516555 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927339.2
CTCCGCTGGCGGAGGAGTTTCGCCAGAGGCACCAACTAAACCTTCATTTTTTCCGAAGCGGGTTTTGGACACCCCTTTCCATTATTTTATTCCGTGACCGGATCACATTTTTCACGTTCGGACAGAAATGGCTGACACAAAAGTCGACACCAGCTCGGAAATATCCGCCAAGgaccttaaagaaaaaaagttggTTGAGGAGGAGGCAGAAAATGGAAAGGACGCTCCAGCCAATGGGAATGCAGATAATGAGGAAAATGGAGATCAGGAAAatgaagtagaagaagaagaggaagatgttggtgaggaagaagatgaagaagatgatggAGAGGGcgatgaagatgaagaggaagatgaggCTGAGGGTGGAACAGGGAAGCGGGCAGCtgaagaggatgatgatgaaGATGATGTTGAGCCTAAGAAGCAGAAGACGGACAATTAAAAGAGGACGTCCTGCTGAACATCTTCCCAACCCTCCTCTCCTTAACTCGTCCTCTGGGGGAAGACAGAAATGTGGTCATCATCAAGTAGAGTTCAGCATCTGTGTACACACACCTAACTGCAAATTTTGTAGAAACAACCAAGACTTCAAAGCTCTACCTTCTTACAAAATACTTTAAAAGGagaatttgtttgtatttttatttacattttatatttttgtacatattgTTAGGAGGTCAGCCATTTTTGACAGTGATCTCTGGTTACCAAACGGTGCTTTGAAGTTGAAGCCTCTCTATGAAATAGATTTTACTTGTGGTCTGACCATGTCATGCTATCTCAActgaaattgtaaaaaaaaaaaaaaaaagaaaaaaatcgaAAGCCGTTTAATTCAAAGCATTCCAGTACTTTGTGTATGTACATCAGTTGTACCATACGTAGTTGGTTTGTATGAGATGGCAAGGCTGAAGAAaagagttttcttttcttgcttgTCTATTAAATTGCTATCTATTGTGGCCTGTTTGATGTATGTGTGAAATTGTTGTGCGACAATAAACCgaaattttattttgtgagttcctaatttattttctctagttttttgggttttttttgttttgttttttgtttttactttttaacagGAGCTTTTAATGTCGCAGGTGTGGAGACTCATGGCCGAGCATCATTTTCAGATATGCACTTCACATATTTCAGAAATATGTCACAGGGAAATGTACTTCAATGTAAATTATTCATGCCTTAAAACCTCAAGATCCGGTATAAATTatattgaattaaataaa

Function

GO: NA

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927339.2 True 1262 mRNA 0.39 5 20512789 20516555

Neighbor

gene id symbol gene type direction distance location
phb2b LOC108427714,LOC107692360,LOC102296991,LOC102211951 coding upstream 32715 20473271 ~ 20480074 (+)
pde6d pde6d coding upstream 40724 20467149 ~ 20472065 (+)
usp13 usp13,LOC107659032 coding upstream 153138 20335631 ~ 20359651 (+)
ndufb5 ndufb5,LOC107709185,LOC107659010,LOC107692354 coding upstream 179098 20329443 ~ 20333691 (+)
actl6a actl6a coding upstream 188210 20315025 ~ 20324579 (+)
meltf meltf coding downstream 142264 20658819 ~ 20671746 (+)
lrrc40 lrrc40,LOC107709203,LOC107590628 coding downstream 157846 20674401 ~ 20683491 (+)
shroom2a shroom2 coding downstream 307785 20824340 ~ 20871696 (+)
cldn34a cldn34 coding downstream 360390 20876945 ~ 20880467 (+)
wwc3 wwc3 coding downstream 377468 20894023 ~ 20948637 (+)
G30545 NA non-coding upstream 6143 20506323 ~ 20506646 (+)
G30543 NA non-coding upstream 7152 20505039 ~ 20505637 (+)
G30536 NA non-coding upstream 25579 20484465 ~ 20487210 (+)
LOC113534552 NA non-coding upstream 28411 20480974 ~ 20484378 (+)
G30489 NA non-coding upstream 83540 20428913 ~ 20429249 (+)
G30620 NA non-coding downstream 163845 20680400 ~ 20680770 (+)
LOC117599214 NA non-coding downstream 254000 20770555 ~ 20781908 (+)
G30715 NA non-coding downstream 318932 20835487 ~ 20889710 (+)
G30721 NA non-coding downstream 331936 20848491 ~ 20851676 (+)
G30747 NA non-coding downstream 446877 20963432 ~ 20963641 (+)
LOC113543059 c11h1orf146 other upstream 492563 20000046 ~ 20020226 (+)
smx5 lsm2,LSM2,smx5 other upstream 975592 19534345 ~ 19537197 (+)
LOC113533886 espnl other upstream 1425578 19061097 ~ 19087211 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other upstream 1564052 18932683 ~ 18948737 (+)
trnai-aau NA other upstream 1695314 18817402 ~ 18817475 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other downstream 20418 20536973 ~ 20658080 (+)
insl5a insl5 other downstream 498283 21014838 ~ 21017867 (+)
tmem69 tmem69 other downstream 2081040 22597595 ~ 22603436 (+)
uhmk1 uhmk1,LOC107692420 other downstream 3117051 23633606 ~ 23653555 (+)
G32684 NA other downstream 3503823 24020378 ~ 24021036 (+)

Expression


Co-expression Network