cttnbp2nla (LOC108272146)


Basic Information

Item Value
gene id cttnbp2nla
gene name LOC108272146
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13120303 ~ 13139653 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928202.2
AATCATTGTTAGTCGTTCCCGTTGTCTCTTCATCACGAAATGCGGTATGTAGGTTACTCGTCCTTAAATCCAAAGCTGATGACCAGTGTTAGAAACTGAACAAAGCTGGAATGGCGCCGACCACGGAGTCCAGGCTGAATGTTGACGCTCTGAGTAAGAAAGATGTGCTGCTGCTCTTCAGTGTGCTGGAGGGAGAACTGGAGGCCCGAGACCTCGTCATCCAGGCACTCAGGGCCCAGCGCAGGGAAATGTATGTGTGGGAGCGCTATGGGAAGTATGATCTGAGCGATCCCTTCCTGGCCCTGCAGAGGGACAACGAGGCTCTTCGGAGCTCTGCTCAGGGCAGAGGAAATGGCGCAAGTTGTTCACAGAgacgagagacagacagcaggcgCTCTGATCCACTGACCATGCTCAGGCTGGTGGTGGGACACTGCAGGAGAATGCAGGAGAAGATGCTGAAACAGCTTGCAGCTGCCGAGAGCAGGCACAGAAGGGTCATTGCAGACttagaggaggagaagaggaggcaTGCTGAGGATACAGCTGAGGGAGATGACGTCACGTGCATCTTAGAGAAAGAACGAGAGCGCCTCCTACAGCAGttggagtttgaaaagtcaaagttCTCCCGCATGGAGAAGGAGAACAAGCGACTGCAAGCTCAGCTGGAGGATGAACGAGTACAGCACAAGCAGCTTATGGCAGCACTGGGGCGTGAGTGCAAACGCTCAAGCTTGCGTGCCCATGAGGAGGGACAGCGTGCCAGTGAGCTTAGTCGCCGCCTGGAGCGCCAACGTGCCACCAATCAAAGCCTGAGGGCAGAGcttgaggaggagaagaagcgTGCCATGCAGATGGAGGCAAGGAGGGAAGAGCTGCTGGCTGAGTTCGATACAGAAAGGGAGCAGCTGGGTCTGCGGTTAAGACGGGAAGAGGCATGCAGCAGTGCTCTGCAGGCGGAGGTGGAGAGGCTGAGGAGAGAGGTACGACAGCTCAGGGGAGAGGAGGACAAGGAGGAGCATAGTAGCGAGTTTAGGGAGGTGAGAAACGGTTCAGTGGAGGGTGGAACAGAAGAATCAGACATGATCCAGCTGAAGATTAACGGTCATCAGTCTCCAGTAGAGGAAGGAGGGAGTGGCTTGAGACAGAGGAATGAGAATGGAGAAGAAAATGGAGCTTTTCATTCCACACTAAACCCTGACCATAATGAACTGACTAATGGGAAGATGTCACCTGCTAATCTGAATAATGAGAGTCCTTCAACCTGTGGCACAGGCTCCTCTCCCGAGACAAGGTCTTCCTCTAGCCTACAGGCTGCCTACCAGGCTGGGATCCAGCAGCGTTTCCATGCGGCACGTCACAAATTCCAGTCTGTTGCCGAGCAAGACCCCCAGCTGGGCTCACCTGTCCCTCAGGCGCCTCGTGACTTTTCACCCTCTGCCACCGCAGATCCTCCAGCAGAGTGCAACTCCAAACAGGCAGGCCGCAGCACAGTGACTCAGGCTCTCAGCCGCTTCAGCACCAAAACACCCTCAACACCCAACAGCTCACCCTTTGGCACAGACTACCGTGCCCTGGCCCCGTCAGGCGCTCTGTCTCCTGGAATTCGCTCTCCCACAATCCCCAGGGTTGATAGGGGCATCCCTCCACCCATTCCCCCTAAGAAACCGGGCCTGGCTGAGACCCCACCCTCCCCTGCCACCCTCCGAGCTGCCCACATGGCTCAGATATTAGCCGGATGTGGGAGTAAAAGCACAGAAAACAGCAAAGAACCAGATCTGCTGTTGTCTTCCAGCAGCTAACAAGCACACCTTAGTCAACCAGTCACCAGTTCTGCAGAGgcatctggatttttttttttttttcattatttcagatCATCATGTTTATGCCTGCTAAGATAATACCATTAATCACAGACTTCATTATATGATAAGTCATATCATATTAGATGTAcgctaagtaaggaataacaaaTGACAGGCCATGCTCTTATACGAAAGTAATCCATGCCTGGGTGGTGTGACACCATGATGCCACCcggaagtggattattttcatataacagcatggccagAAGAGTGTTCTTCCACGTGcaccgcagcaatttgccatcagtgacatttttttatttattaataaaagctttttatagttagatttagtGGTATGGAACCTCtgtgagttcctgttatcactta
>XM_034298925.1
GTAAGAAAGATGTGCTGCTGCTCTTCAGTGTGCTGGAGGGAGAACTGGAGGCCCGAGACCTCGTCATCCAGGCACTCAGGATATTGGCATATGACCAAGGCTGCATGAGTCGCCTGAGAGACTGGATATTTCCACTGGGGAATTGGGGTTCCATGGATATTTCCATTGTGGAATTTCCAGTGGGAAATTTCCATTCTGAAACCCCAGTCAGGAAATGTTAAAACACCACTACCCACACCCCACAGATAACTTGGAGAACAACTAAAGTATGCTTCAGCCCAGCGCAGGGAAATGTATGTGTGGGAGCGCTATGGGAAGTATGATCTGAGCGATCCCTTCCTGGCCCTGCAGAGGGACAACGAGGCTCTTCGGAGCTCTGCTCAGGGCAGAGGAAATGGCGCAAGTTGTTCACAGAgacgagagacagacagcaggcgCTCTGATCCACTGACCATGCTCAGGCTGGTGGTGGGACACTGCAGGAGAATGCAGGAGAAGATGCTGAAACAGCTTGCAGCTGCCGAGAGCAGGCACAGAAGGGTCATTGCAGACttagaggaggagaagaggaggcaTGCTGAGGATACAGCTGAGGGAGATGACGTCACGTGCATCTTAGAGAAAGAACGAGAGCGCCTCCTACAGCAGttggagtttgaaaagtcaaagttCTCCCGCATGGAGAAGGAGAACAAGCGACTGCAAGCTCAGCTGGAGGATGAACGAGTACAGCACAAGCAGCTTATGGCAGCACTGGGGCGTGAGTGCAAACGCTCAAGCTTGCGTGCCCATGAGGAGGGACAGCGTGCCAGTGAGCTTAGTCGCCGCCTGGAGCGCCAACGTGCCACCAATCAAAGCCTGAGGGCAGAGcttgaggaggagaagaagcgTGCCATGCAGATGGAGGCAAGGAGGGAAGAGCTGCTGGCTGAGTTCGATACAGAAAGGGAGCAGCTGGGTCTGCGGTTAAGACGGGAAGAGGCATGCAGCAGTGCTCTGCAGGCGGAGGTGGAGAGGCTGAGGAGAGAGGTACGACAGCTCAGGGGAGAGGAGGACAAGGAGGAGCATAGTAGCGAGTTTAGGGAGGTGAGAAACGGTTCAGTGGAGGGTGGAACAGAAGAATCAGACATGATCCAGCTGAAGATTAACGGTCATCAGTCTCCAGTAGAGGAAGGAGGGAGTGGCTTGAGACAGAGGAATGAGAATGGAGAAGAAAATGGAGCTTTTCATTCCACACTAAACCCTGACCATAATGAACTGACTAATGGGAAGATGTCACCTGCTAATCTGAATAATGAGAGTCCTTCAACCTGTGGCACAGGCTCCTCTCCCGAGACAAGGTCTTCCTCTAGCCTACAGGCTGCCTACCAGGCTGGGATCCAGCAGCGTTTCCATGCGGCACGTCACAAATTCCAGTCTGTTGCCGAGCAAGACCCCCAGCTGGGCTCACCTGTCCCTCAGGCGCCTCGTGACTTTTCACCCTCTGCCACCGCAGATCCTCCAGCAGAGTGCAACTCCAAACAGGCAGGCCGCAGCACAGTGACTCAGGCTCTCAGCCGCTTCAGCACCAAAACACCCTCAACACCCAACAGCTCACCCTTTGGCACAGACTACCGTGCCCTGGCCCCGTCAGGCGCTCTGTCTCCTGGAATTCGCTCTCCCACAATCCCCAGGGTTGATAGGGGCATCCCTCCACCCATTCCCCCTAAGAAACCGGGCCTGGCTGAGACCCCACCCTCCCCTGCCACCCTCCGAGCTGCCCACATGGCTCAGATATTAGCCGGATGTGGGAGTAAAAGCACAGAAAACAGCAAAGAACCAGATCTGCTGTTGTCTTCCAGCAGCTAACAAGCACACCTTAGTCAACCAGTCACCAGTTCTGCAGAGgcatctggatttttttttttttttcattatttcagatCATCATGTTTATGCCTGCTAAGATAATACCATTAATCACAGACTTCATTATATGATAAGTCATATCATATTAGATGTAcgctaagtaaggaataacaaaTGACAGGCCATGCTCTTATACGAAAGTAATCCATGCCTGGGTGGTGTGACACCATGATGCCACCcggaagtggattattttcatataacagcatggccagAAGAGTGTTCTTCCACGTGcaccgcagcaatttgccatcagtgacatttttttatttattaataaaagctttttatagttagatttagtGGTATGGAACCTCtgtgagttcctgttatcactta

Function

NR:

description
CTTNBP2 N-terminal-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928202.2 False 2204 mRNA 0.52 5 13120303 13139653
XM_034298925.1 True 2247 mRNA 0.52 5 13127220 13139653

Neighbor

gene id symbol gene type direction distance location
phc2b LOC108272160,LOC108427585 coding upstream 2747 13086940 ~ 13117556 (+)
padi2 padi2,LOC100380857 coding upstream 170699 12933658 ~ 12949604 (+)
tespa1 tespa1,LOC107549312 coding upstream 688166 12422155 ~ 12432137 (+)
LOC113533905 LOC108271551 coding upstream 717622 12394065 ~ 12402681 (+)
LOC113533827 LOC108271551 coding upstream 734616 12364125 ~ 12385687 (+)
wnt2ba LOC108271793,LOC106582740,LOC107666178,LOC107729733,LOC107708099 coding downstream 7617 13147270 ~ 13156144 (+)
mov10a mov10,LOC108427590 coding downstream 60399 13200052 ~ 13214563 (+)
LOC113543455 LOC108272164,LOC108272179,LOC108427594 coding downstream 301540 13441193 ~ 13448129 (+)
LOC113535652 LOC108272179,LOC103032899,LOC108427596,LOC107666031 coding downstream 316909 13456562 ~ 13466321 (+)
sycp1 sycp1 coding downstream 327789 13467442 ~ 13490077 (+)
G26266 NA non-coding upstream 212209 12855396 ~ 12908094 (+)
G26233 NA non-coding upstream 320449 12799618 ~ 12799854 (+)
G26231 NA non-coding upstream 322274 12797696 ~ 12798029 (+)
G26229 NA non-coding upstream 325002 12795088 ~ 12795301 (+)
LOC117595882 NA non-coding upstream 358017 12758499 ~ 12762286 (+)
LOC113533310 NA non-coding downstream 212193 13351846 ~ 13374496 (+)
G26749 NA non-coding downstream 295251 13434904 ~ 13517403 (+)
G26848 NA non-coding downstream 486828 13626481 ~ 13629466 (+)
G26873 NA non-coding downstream 682731 13822384 ~ 13825226 (+)
G26875 NA non-coding downstream 694586 13834239 ~ 13836347 (+)
si:ch211-286o17.1 NA other upstream 369026 12728993 ~ 12751277 (+)
G25908 LOC108272198 other upstream 592812 12526170 ~ 12527491 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other upstream 906646 12204441 ~ 12213657 (+)
G25029 NA other upstream 2211731 10906200 ~ 10908572 (+)
G24500 NA other upstream 2921848 10197966 ~ 10198455 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other downstream 126135 13265788 ~ 13332177 (+)
tshba tshb,LOC108271948 other downstream 350508 13490161 ~ 13506004 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other downstream 2139169 15278822 ~ 15304494 (+)
LOC113534559 LOC108272085 other downstream 2648973 15788626 ~ 15790444 (+)
slc2a11a LOC108271728,LOC108440316 other downstream 2943636 16083289 ~ 16103248 (+)

Expression


Co-expression Network