pbrm1l (LOC108271990,LOC108427561,LOC107667000,LOC107713535)


Basic Information

Item Value
gene id pbrm1l
gene name LOC108271990,LOC108427561,LOC107667000,LOC107713535
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 12246651 ~ 12259190 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928903.2
ATGGGCTCCAAGAGACGACGCATCGCTTCTCCCTCCAGCAGTGTGAGTGGAGACTTTGATGATGCCACTTCATCAACTCCAGCCAGTAGCTGGAAAAGGAGGAGGACTTCTAATGCCACTGCTGTCGATCAGattgctGTTTGCAATGAATTGTACAACACTATCAGGGACTACAAAGATGAGCAAGGGAGGCAGATCTGTGAGCTGTTTGTTCGTGCTCCAAAAAGAAGGAATCAGCCGGATTACTATGAGGTGGTGAGCCAGCCCATTGACATGATGAAGATCCAGCAGAAGCTCAGGACAGAAGACTACCAAGATGCAGAGCAGTTCTCTGAAGATTTTAAGCTACTTATAAACAATGCCAAAGCTTACTATCCGaCTGATAGTCCGGAGTACAGGGCTGCCTGTAAGTTGTGGGCTCTGTTTCTGTCCACAAAGAGTAGCCTTCTTCGTGGGGGAGATGTCgaggatgatgaggaagaagaggaaagtGAAGATGCTGACAACCCAGGAGTCTCCACAGAGGAGGAGATGTCACCCAACTATATGAAGGGAGTCCTAGAGCAGCTGTTGGAGGCTGTTGTGTCTTACACTGATTCTTCAGGGAGATTAGTTAGTGAACTTTTCCAGAAGCTGCCCTCTAAACTGCAATACCCAGACTACTATGCCATAATCAAAGAGCCAATAGATTTGCGAACCATAGCTCAGAggatacagATGGGACATTACAAATCCATCAGTGCCATGGCCAAGGACATTGATCTTTTGACCAAAAATGCCAAAGCCTACAATGAACCTGGATCACAAGTTTATAAGGATGCAAACACAATCAAGAAGGTCTTTACGCAGAGGAGGAGTGAACTTGAACAGGCAGAACCAACAAAATCCAGCCTCCGCATCAGGAATCGGAGGTCTGCTCAGGGTGATCGTCTGCCTGCTATTACTGTGTCTCTGCAGCCTGGCTCAGAGAGCGATGAAGACTCCATTCTGTCAGGCTCTGTGCGGTATGATGCTGGGGAGATGGAGTCTGAAAGTGGGCATACTCGATTAGCTACTGGTGACCCGATCTTCCAGTTGTACCAAGCTGTCCGAGGGGCCCGTAACACTCAGGGTCAGCTCCTCGCTGAGCCGTTCCTCCAGCTTCCTTCACGCAGAGAGTACCCTGATTACTACCAGCAGATCAAACACCCCATTTCTCTCCAGCAAATCAGAGAAAAAATGCGGAATGGGGACTATGAGGGAGTCGAGCAGATGGAATCAGACCTTAATACTATGTTTGAGAATGCTAAACGATACAATGTCCCCAATTCTGCCATTTACAAGCGTGCTCAAAAACTACAGCAAATAATGCAGCTAAAAAGGAGAGAACTTCGAGATGAATATGAGGGAGACAGTTTGCTCGCCACCATAACCCCTGACACAGGAAGCAGTAAGAGAAAAAGTCATAAGAAGAACACcaagaaaaacagaatgaaagcGCTGTATGCAGCAGTGACAGAGGCACGAGAGGCAGGTACAGGTCGGCGCCTCTGTGACCTCTTCATGGTAAAGCCGTCAAAGAAGGACTACCCTGATTACTACCAGGTTATCATAGAGCCCATGGACCTGCGCACCATTGAGAGCAATATCCGCTCTGAGCGCTATGTCAGCGAGGAGGCTCTCATGAACGATATGAAGCTCATGTTCCGCAATGCTCGCCACTACAACGAGGAAGGCTCTCAGGTTTACAATGATGCAGATATTCTGGAAAAGATtgtaaaggaaaaacagaaggaaCTTGGACCTTTACCtgaggatgatgatgttggCTCACCCAAACTCAAACTACGGAGGAGTGGTGGTGCTGCATCTCCCAAGAAGTTCCGTTCTCAGACGTCCCTGCAGCAGAAACTGAGCGAGCTCTATGAAGCTGTTCGCAGTTTCACAGACAGTCGTGGACGCCGCCTGAGCACGGTGTTTCTGCGGTTGCCGTCACGCTCTGAGCTGCCCGATTACTACGCCGCCATCAAGCGGCCTATTGACATGGAGCGTCTGCGCAGCTACATGGTCCAGGGCCGCTACCAGGACATAGAGTCAATGGCTGAGGATTTCATCCTTATGTTCAACAACGCCTGTACATACAATGAGCCTGAGTCACTCATCTACCGCGATGCACTGCTGCTCCACAGAGCCTTCCTTGATGCACGCCGCAACctggagaaggaggaagaggaaggagaggaaagaGTGGGAGCTCAAGTGGCCGTAGCTCCGCTGGTCTGCGAGCTCATTCGGAACCTATTTGTGTCAGTAATGGGCCATCAGGACGACGAGAGCCGCTGCTACAGTGACTCGCTCGCAGAGGTGCCCGCTGTGGATCCTGCAAACTCAGAGGCCCCGCCTCTTAACTTGGAGATGATCCGCAACAATGTAGAGCGTGGACGCTATCGGAGACTGGATGTGTTTCAGGAGCATTTCTTTGAGGTGCTGGAGAAAGCCAGACGCCTCAACAGAACGGACTCTGAGATCTTTGAGGACTCGGTTGAGCTGCAGCAGTTCTTTGTGAAGATCCGAGATGAGCTATGCAAGAATGGTGAGATCCTGCTGTCCCCAGCACTGAGCTACACATCCAGACACCTGCATGCAGATGTGGAGCAGgacaagagagaaaaactgcCTCTGGAAATGGAGGAAGATCGACTCAAAGTTGAGGAAGACAAGAAAGAGGAGGAAAAGGCAGAGGGTGCTACAGATGGACAGTGGTCGTCAGGCTTTCAAAACACCTATAGTCAAGACTGCAGTTTTGAGAACAGCACCTACAGTGTAGGAGACTGTGTATATGTGCAGCCATCTGAAGCCAACCTGCAGCCCCACATTGTAAGCATCGAGAAACTGTGGAAGGATGAGGCTGGTGAGCAGTGGCTAAATGGCTGCTGGTTTTACCGACCAGGCGAGACCTTCCACTTGGCTACACGCAAGTTCCTGGAAAAAGAAGTATTCAAGAGTGACTACTACAACAAAGTTCCAGTCAGTAAGATACTGGGGAAATGCATGGTCATATTTGTAAAGgattattttaaatttcagcCCGAGGGCTTCAAGCCTGAGGACGTCTTTGTTTGTGAGTCTCGTTACACGACCCGGACCAAGGCCTTCAAGAAGATCAAAATGTGGACCATGCCACCAAGCTCTGTGAAATTAGTCCCTCGTGATGTGCCATTACCTGTAGTCAGAGTTGCGTCCATGTTTGTCAATGCTGCAAATCATGACCAGGACAAGATGGCAGACACTGCTGATGATCATGTTAGCTTTATTGAGAAAGAGAGAGAGGCTGTTCCTGTAGAGGTGGCCAATGCTGAACCTGGATGTCAGTACTACGAACAGCTTTGCTACAATAACATGTGGCTGAAAGTGGGTGATTGTGTCTACATTCGATCGCATGGATTGACACGTCCACGAATTGGCAGGATTGAGAAGATGTGGGAGCAGGATGGAGTTGCTTTCTTCTTTGGGCCCATATTTATCCACCCTGAGGAGACAGAACATGAGCCCACAAAGATGTTCTACCAGCGTGAAGTGTTCCTGAGCAACCTGGAGGAGACCTCCCCTATGATGTGCATTTTAGGAAAGTGTGTTGTCTCCTCCTTTAAGGACTTTATTTCCTGTAGGCCCACTGAGTGTACAGAGGAGAATGTACACGTGTGTGAGAGCCGCTACATTGAGAGCGAGAAGCAGATGAAAAAATTTAAAGGCCTCAAACGATTTTCCCTTTCAGCCAAAGTGGTAGATGATGAGATCTACTACTTCAGAAAGCCGCTTGTGCCCTCCAAGGAGCCATCTCCCCTGCTGGATAAAAAGATTGAAGAGCTAGAGGCTAAATTTGCAGATATTGAGGACCTGGATGAAGATCTAGAtgagatggaggatgaggatgatgaagcaCCAGCAACACCCTCTATGCCCCAGCATCAGGCTTCACTGACTAGTGATATGGACCTTCCTAACTTACCACTACAGTCCACACCAAAGACGATAAAAGGTCTATCCAAGAAAGAAGGAGCCAAGCGCAAGATCAACATGAGTGGCTACATTCTGTTTAGCAGTGAGATGCGAGCTGTCATCAAGGCTCGACACCCAGATTTCTCATTTGGAGAGCTGAGTCGTCTTGTGGGTACGGAGTGGAGGAACCTGGAATCTAATAAGAAGTCAGAGTATGAAGAGCGGGCCGCTAAACTGGTAGAACAGCAGGAACGGGAAAGGGccctccagcagcagcagcagcagcaacaacagcagcagcagcagcaggcagcAGCCTCCCCGAGAGCAGGTACCCCAGTCGGGTCTCTGATGGGGGTGGTGCCTCCCCCAAGCTCTATGGGGATGCTAAACCAAGCCATGCCAGGCATGATGGGAAATTATGGCCCACCCTTCATGCCTATGCAGGGTCCTCCTGATGGCATGATGGGTATGGGTGGCACACCTCCTCACCCCATGGGGGTGCCCGCGTTGCCACCTCAGCACTACTTTACATCAGGCATGGCTGGGTACCCCGGTATGCCCCCTCCTGGTGGAATGGGACCTGGTATTAATGGTATGGCTGGAAGTCCTGGTCCAGGAAACCCTTATGGGCTTCAGATGGGTGCATATGGCCCCGGGCAGGTGGCTCCGCCTCCGTACCCAGGCCAGAGTCAACTGGGTCAGTCTACCCACCAACCACCAGGCGCGCCCATGTTCATAGCGCCGCCTCCCAGGCCACAGCGCCTCCTGCATTCAGAAGCCTACCTGAAATACATAGAAGGGCTCAGTGCAGATTGCCCCACTATCAGCAAATGGGACCAGAGCCTTAAGGCTCAAAGGAAAGACTCTCGCCTCAGTAGAGAGCAGGAGAGCCGTCTTCCTTCTCATTGGCTGAAGAGCAAAGGTGCTCACACCACGATGGTTGATGCACTGTGGCGACTGAGAGATTTAATGATGAGAGACACTCTCAGCATCCGACAAGCTTACAACCTTTAA

Function

NR:

description
PREDICTED: protein polybromo-1-like

GO: NA

KEGG:

id description
K11757 PBRM1, PB1; protein polybromo-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928903.2 True 4995 mRNA 0.50 29 12246651 12259190

Neighbor

gene id symbol gene type direction distance location
cfap20dc c11h3orf67 coding upstream 43479 12183047 ~ 12203172 (+)
cenps LOC108271797,LOC107713529,LOC107708744,LOC107555976 coding upstream 210862 12032047 ~ 12035789 (+)
h6pd h6pd coding upstream 220017 12020246 ~ 12026634 (+)
shmt2 shmt2,LOC107758195,LOC103359782 coding upstream 309088 11902218 ~ 11937563 (+)
LOC113547077 nxph4,LOC107556734,LOC107758187,LOC107676147,LOC107735585 coding upstream 353911 11832707 ~ 11892740 (+)
stau1 stau1 coding downstream 1132 12260322 ~ 12269807 (+)
LOC113533827 LOC108271551 coding downstream 104935 12364125 ~ 12385687 (+)
LOC113533905 LOC108271551 coding downstream 134875 12394065 ~ 12402681 (+)
tespa1 tespa1,LOC107549312 coding downstream 162965 12422155 ~ 12432137 (+)
padi2 padi2,LOC100380857 coding downstream 674468 12933658 ~ 12949604 (+)
G25624 LOC108271795 non-coding upstream 208637 11946093 ~ 12038014 (+)
LOC113533008 NA non-coding upstream 271662 11957228 ~ 11974989 (+)
LOC113534932 NA non-coding upstream 441192 11803590 ~ 11805459 (+)
G25452 NA non-coding upstream 454526 11732424 ~ 11792125 (+)
LOC117599151 NA non-coding upstream 558427 11668819 ~ 11688224 (+)
G25872 NA non-coding downstream 15662 12274852 ~ 12275052 (+)
G25882 NA non-coding downstream 33733 12292923 ~ 12293129 (+)
G25886 NA non-coding downstream 36421 12295611 ~ 12296042 (+)
LOC117599716 NA non-coding downstream 43734 12302924 ~ 12309500 (+)
G25907 NA non-coding downstream 149131 12408321 ~ 12408523 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other upstream 32994 12204441 ~ 12213657 (+)
G25029 NA other upstream 1338079 10906200 ~ 10908572 (+)
G24500 NA other upstream 2048196 10197966 ~ 10198455 (+)
manbal manbal other upstream 2305464 9938365 ~ 9941187 (+)
LOC113530691 LOC108410934,LOC108272263,LOC107696444,LOC107587591,LOC107744363 other upstream 2323486 9874708 ~ 9923165 (+)
G25908 LOC108272198 other downstream 266980 12526170 ~ 12527491 (+)
si:ch211-286o17.1 NA other downstream 469803 12728993 ~ 12751277 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other downstream 1006598 13265788 ~ 13332177 (+)
tshba tshb,LOC108271948 other downstream 1230971 13490161 ~ 13506004 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other downstream 3019632 15278822 ~ 15304494 (+)

Expression


Co-expression Network