LOC113535652 (LOC108272179,LOC103032899,LOC108427596,LOC107666031)


Basic Information

Item Value
gene id LOC113535652
gene name LOC108272179,LOC103032899,LOC108427596,LOC107666031
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13456562 ~ 13466321 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929119.2
TGAACCTGGGCCTGGCATGTTACTTCATTAAGACCTGTGGTGCTTGTGATATCTCTTAGTTCAGTTGTGTGTCAGTGCCTTCAGTGTACTCTATTAAATACTAAAGCATCGCTGACTTGTATTTTGGAGAACTAGTGTGCTTtggagtttgtttgtttttttcttctgagaaCGTGTTGAGTGGTGTTCAAAAGAAATCACCATGCCGCCTGCAGTTGGCGGTCCTGTGGGTTACACTCCTCCAGAGGGGGGCTGGGGTTGGGCAGTTGTGGTTGGTGCCTTCATCTCTATTGGTTTCTCCTATGCCTTCCCAAAGTCCATCACTGTGTTCTTCAAAGAGATTGAAGTGATCTTTCAAGCCACCAGTAGCCAAGTCTCCTGGATCTCATCCATCATGCTAGCTGTCATGTATGGAGCAGGTCCTATCAGCAGTATTCTGGTGAATAAGTATGGGAGTCGTCCGATCATGATAGCAGGGGGTTGCCTGTCAGGAGCTGGACTTATTGGTGCATCTTTCTGCAACACAGTGGAGGGCTTGTATTTCTTTGTGGGTGTTGTAGGAGGTTTGGGACTCGCGTTCAATCTCAACCCAGCCCTTACTATGATTGGCAAATATTTCTACAAAAGAAGGCCCATTGCAAATGGCATTGCCATGGCTGGTAGCCCTGTGTTTCTGTCCACGTTAGCCCCTCTGAACAGTTGGTTTTATGACCAGTTTGGTTGGAGGGGTAGCTTCCTAATCCTGGGTGGACTTCTGTTCAACTGTTGCGTAGCTGGATCTCTCATGAGGCCTATAGGGCCAAAACCCAAACCTGCTGTGAAGGAAGTTAGTGCTGATGGAGAGAAGAAGACAGTGATGCAGCTTATCAACAGTCTCATTGATCTGTCTCTCTTCAAACACCGTGGATTCATCCTGTACCTCATAGGCAATATTGTCATGTTCTTTGGCCTTTTCACACCCCTAGTATTCCTCAGTAATTTTGCCAAAAGTAGGGGTATTACAAAGGACAAAGcagcttttttactttcagTGCTGGCCTTTGTGGACATGGTGGTGCGGCCATCCATGGGAACAGTGGCCAACACCAAGTGGGTACGACCTAGGatacagtatttctttgcaGCCTCCATTCTATTTAACGGTGTGTGCCATGTTCTTGCACCTCTTTCAGTTGATTACCTAGGGTTTGTTATCTATTCGGTCTTCtttgggtttgggtttgggTGGCTGAGCTGTGTGCTATTTGAGACCCTGATGGACTTGGTGGGAACCCAGCGTTTCTCCAGTGCTGTGGGCCTGGTCACCATTGTGGAGTGTGGACCAGTGTTAATTAGCCCTCCACTGCTGGGAAAATTTAATGACATCTACCATGACTACAAGTACACTTACATAACCTGTGGAATATTCCTGATGGTTGCAAGCATGTTCCTTTTTATCTGCATGAGCATTAACTACAGGCTACTGGATAAGGAAGCAAAGGAGGAAGCTAGAAAATCTCAGCTAacaggaaaagaggaagaatcCACCATAGACATTGCAGACAAGGAGACAGCTGCTGCTGCACTGAGAGTAAACAGAGAagctaaaacagcagaagacactGTGTGACTTCCCCTATCCAGACATGACTGTACACTTTTGTGGAACTATATGTCATGCatttctgcattattattattattattattattattattattattattactattattattatgcaatatTTCCATGCATAAAAATATCACTGAGAGGACACAATACAAGGTGGTTCAgtgcataaaaacattttagaaatgttaatgtttgacATTATTTTAACTGACCCTAAGagattttctcctcttttttttatttgtatcacAGTCAAAAGTAGTCTAAAAATATGGTATTTATAAGGGTATTACAATAGCTAGCactaataaaacagtattttaaatgtctttatttattttttgagtaAACTTAGATTTTATGTTTATAGTCTCCTGTTAAGTTATAACAAAGGGTTGACAAGTTACTATatgatatggccaaaagtatgtgaacacctgaccatcccaCCCACATGTTCTTCCCTAAACAGTTTCCACAAtggtggaagcacacagttgtatagaatgtcttctATGTATagaatgctgtagcattacaatttcccttgactggaactaaggggcatAAACATgtacaaagcgaggtccatgaagacacggCTTGCCAATGCTTGCCAATGCCTCcacgcccaacatcagtgcctgaccttactaatgctcttgtgctGGAATGAGAAAAACCCCATAGCCATGCTTCAAAATTTAGTGGAAAGACTTCTTAGAAGaatggaagttattataacagcaaaggggtaTTAAATCCGGAttgggatgttcagaaagcacatataggtgtgatggtcagccttttggccatgtagtgtattttaaTGCTTTGCAGTAATACATTAATGAACTGATAAGATATGTTTAAAGAACAACCAATCATGGGCATTTTGAAAAATGGGAGTACTGATTTTCTGACGCCTTCGTTCGGCATCATACTTGTGATTAagtaactgaataaaaatatgatcaGAAAGA

Function

NR:

description
PREDICTED: monocarboxylate transporter 1-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0015718 monocarboxylic acid transport biological_process
GO:0007130 synaptonemal complex assembly biological_process
GO:0000795 synaptonemal complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015355 secondary active monocarboxylate transmembrane transporter activity molecular_function

KEGG:

id description
K08179 SLC16A1; MFS transporter, MCT family, solute carrier family 16 (monocarboxylic acid transporters), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929119.2 True 2601 mRNA 0.42 5 13456562 13466321

Neighbor

gene id symbol gene type direction distance location
LOC113543455 LOC108272164,LOC108272179,LOC108427594 coding upstream 8433 13441193 ~ 13448129 (+)
mov10a mov10,LOC108427590 coding upstream 241999 13200052 ~ 13214563 (+)
wnt2ba LOC108271793,LOC106582740,LOC107666178,LOC107729733,LOC107708099 coding upstream 300418 13147270 ~ 13156144 (+)
cttnbp2nla LOC108272146 coding upstream 316909 13120303 ~ 13139653 (+)
phc2b LOC108272160,LOC108427585 coding upstream 339006 13086940 ~ 13117556 (+)
sycp1 sycp1 coding downstream 1121 13467442 ~ 13490077 (+)
slc25a55a LOC108271946,LOC108427598,LOC106566040,LOC107554200,LOC107708156,LOC107685798 coding downstream 44007 13510328 ~ 13515529 (+)
LOC113534455 kcna3a,LOC108271529,LOC107554199,LOC107708155,LOC107685799,LOC107729772,LOC107666172,LOC107577939,LOC105907781 coding downstream 104438 13570759 ~ 13578479 (+)
LOC113534264 LOC108271528,LOC103030675,LOC108427602,LOC107685800,LOC100537815,LOC107554174,LOC107596796,LOC107666037,LOC107729734 coding downstream 118771 13585092 ~ 13590794 (+)
LOC113537237 LOC108271567,LOC108427546,LOC107708091,LOC107596858,LOC107666053,LOC107729737,LOC107554173,LOC107685839 coding downstream 130528 13596849 ~ 13612881 (+)
LOC113533310 NA non-coding upstream 82066 13351846 ~ 13374496 (+)
G26266 NA non-coding upstream 548468 12855396 ~ 12908094 (+)
G26233 NA non-coding upstream 656708 12799618 ~ 12799854 (+)
G26231 NA non-coding upstream 658533 12797696 ~ 12798029 (+)
G26229 NA non-coding upstream 661261 12795088 ~ 12795301 (+)
G26848 NA non-coding downstream 160160 13626481 ~ 13629466 (+)
G26873 NA non-coding downstream 356063 13822384 ~ 13825226 (+)
G26875 NA non-coding downstream 367918 13834239 ~ 13836347 (+)
G26884 NA non-coding downstream 406994 13873315 ~ 13873523 (+)
G26921 NA non-coding downstream 534610 14000931 ~ 14054690 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other upstream 124385 13265788 ~ 13332177 (+)
si:ch211-286o17.1 NA other upstream 705285 12728993 ~ 12751277 (+)
G25908 LOC108272198 other upstream 929071 12526170 ~ 12527491 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other upstream 1242905 12204441 ~ 12213657 (+)
G25029 NA other upstream 2547990 10906200 ~ 10908572 (+)
tshba tshb,LOC108271948 other downstream 23840 13490161 ~ 13506004 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other downstream 1812501 15278822 ~ 15304494 (+)
LOC113534559 LOC108272085 other downstream 2322305 15788626 ~ 15790444 (+)
slc2a11a LOC108271728,LOC108440316 other downstream 2616968 16083289 ~ 16103248 (+)
mustn1a LOC108272082,LOC108439813 other downstream 2714850 16181171 ~ 16182309 (+)

Expression


Co-expression Network