zmynd10 (zmynd10)


Basic Information

Item Value
gene id zmynd10
gene name zmynd10
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15025127 ~ 15032562 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929243.2
gagagagagagagagagcgtgcgCGTGCCTGTGTGTACTCGTTGCCATAGTAACGAGGCTTCGCGGCTAGCTGGATCATTAAGCAGCAGTGATGGACTCTCTGCTTCTGCACGGAGAGGCTGAAGGTTACATCCAGGGTTTGGAAAGAGTAGCACTGCGCGACGTTGGGAGTCCCAGGTGGTTTCGGCAGCACGAATACATTGAGAAACTCAATATGCAAGCTATTCTTCATGCCAGCGCTAATCAAGAGGAGTTTATCAAAGACCTTTTTGTGTCACTTGGAAAGATTCCCATGCTGGTTCATGGATTGATACTTGTTGAAGTTTGGAAGCAGAAAGTGTTCCCTATCCTCTGCAAGCTTCAGGACTTCAGCCCAAAGAGCACCTTTCCACTGTACATGGTGATTCACCATGAAGCTACAATCATAAATCTGTTGGAGACGATCTTATACCATAAAGAATCATGTGAGGCAGCAGAGGATACTGTTGTGGACCTTGTCGATTATTGCCATCGTAAACTGACTCTGCTGGCAGGGCGCTGTGCCCGGGGGGAACTCCCCACTGAAGACAGAACCTCACACACAGAGGTCTCAAACATGAACTCTGTACAGAATCTGCAAAACCAGAGCACAATTTTAGAATTTGAGATCTCTCTCAAGGCTCTGTCTGTGCTACGCTACATTACGGATCATGTAGAAAGTTTGAGTTTGAGTGTTCTCACGAGGATGCTGAATACTCATAACTTGCCCTGTGTGCTGGTTCAACTTGTAGAGCATTGTCCCTGGAGCCGTAGTTCTGGAGGTAATCTGCAGAAGTACGAGGGTGGGAAGTGGAGAGAGATCCCTGCAGAGGACAGGCtaaaaatgaccaaactggAAGGGCAGGTGTGGATTGCTTTGCTGAATCTACTGCTTAAACCAGACTGCCAGAGGAAATATGATTTCAACAACTTCAACAAAAACCAGCTCTTAAAGCTGCGTGGATTTTTGACAGAGGTTGTTATCGATCAGCTGCCAAATCTTGCTGATCTTCAGCGTTTCCTCAGCCACTTAGCTGTTACAGACCCTGCACCTCCAAAAAAAGACCTTATCCTTGAGCAGCTACCAGAGATCTGGAATGAGATTGTTGCGGagaattctgggaaatggaaGGCCATAGCTAAACACCAAGTGAAGAAGGTGTTCAACCCATCTGAGAGTGAGCTGAGAGAACAGGCAAACAGGCTGGCTGAGACTTATAATCTTGATGTGATGGAGTATCTCATCCCAGATAAACCGAAGTGTGGTGCGTGTGGAGCAGTGGGGGCCAAGCGTTGCTCCCGCTGCCAGGGAGAGTGGTACTGCAACAGAGAATGCCAGGTGAAGCATTGGCCCAAGCACAAACTTGCGTGCCAAATGATTGCAGAAGCCTCAGAGAAACTCCAGAAAGAGCTGAACATCAAGACCTGAGGGACTCCACCACGTACTGACAGGAAAGAGGCAGAGACTTCATTTTCAGTCTTACAGAGATCAGAGGAACAAAATGACTATAAATGCCATTGTCTGAATGACCTGTGTATAGCAACAAACACCAGCTTGGCTTGCTGTGGTTTTGATGGGAATTGAGGAAGAGTTCACTGTTTTATTGTAGTGGACTGAGCCTGTGTGTGACTGCATGCACTGCAGGAACTTAAATTGAACTTTTTGAACTACCGagaatttttgaaaattaaaaagaaattataggTATGACCgccattttgtgttttgtttgtatgtaaCTGTTTTAGAAGATTTTGACAGTTAAAAGTCTGTTTTGAGTTTTCTGAGCATATTGCTTCAATGTGAATGTAGCCATATTACAGTTTCATGCATAGCTctttgctcacacacacacacacacaactgaactgaattgagagagat
>XM_034313979.1
CGGTCCTCTTGGCTCGGCTGTTGCTGGTGCTGGTGTAGTGAAGTTCTAGTGTTCATCTTGAGCAGGAGAGAggatcctgtgtgtgtttacaaacaAACGGCAATcctgtagaggatgttttGTGGTTTCGGCAGCACGAATACATTGAGAAACTCAATATGCAAGCTATTCTTCATGCCAGCGCTAATCAAGAGGAGTTTATCAAAGACCTTTTTGTGTCACTTGGAAAGATTCCCATGCTGGTTCATGGATTGATACTTGTTGAAGTTTGGAAGCAGAAAGTGTTCCCTATCCTCTGCAAGCTTCAGGACTTCAGCCCAAAGAGCACCTTTCCACTGTACATGGTGATTCACCATGAAGCTACAATCATAAATCTGTTGGAGACGATCTTATACCATAAAGAATCATGTGAGGCAGCAGAGGATACTGTTGTGGACCTTGTCGATTATTGCCATCGTAAACTGACTCTGCTGGCAGGGCGCTGTGCCCGGGGGGAACTCCCCACTGAAGACAGAACCTCACACACAGAGGTCTCAAACATGAACTCTGTACAGAATCTGCAAAACCAGAGCACAATTTTAGAATTTGAGATCTCTCTCAAGGCTCTGTCTGTGCTACGCTACATTACGGATCATGTAGAAAGTTTGAGTTTGAGTGTTCTCACGAGGATGCTGAATACTCATAACTTGCCCTGTGTGCTGGTTCAACTTGTAGAGCATTGTCCCTGGAGCCGTAGTTCTGGAGGTAATCTGCAGAAGTACGAGGGTGGGAAGTGGAGAGAGATCCCTGCAGAGGACAGGCtaaaaatgaccaaactggAAGGGCAGGTGTGGATTGCTTTGCTGAATCTACTGCTTAAACCAGACTGCCAGAGGAAATATGATTTCAACAACTTCAACAAAAACCAGCTCTTAAAGCTGCGTGGATTTTTGACAGAGGTTGTTATCGATCAGCTGCCAAATCTTGCTGATCTTCAGCGTTTCCTCAGCCACTTAGCTGTTACAGACCCTGCACCTCCAAAAAAAGACCTTATCCTTGAGCAGCTACCAGAGATCTGGAATGAGATTGTTGCGGagaattctgggaaatggaaGGCCATAGCTAAACACCAAGTGAAGAAGGTGTTCAACCCATCTGAGAGTGAGCTGAGAGAACAGGCAAACAGGCTGGCTGAGACTTATAATCTTGATGTGATGGAGTATCTCATCCCAGATAAACCGAAGTGTGGTGCGTGTGGAGCAGTGGGGGCCAAGCGTTGCTCCCGCTGCCAGGGAGAGTGGTACTGCAACAGAGAATGCCAGGTGAAGCATTGGCCCAAGCACAAACTTGCGTGCCAAATGATTGCAGAAGCCTCAGAGAAACTCCAGAAAGAGCTGAACATCAAGACCTGAGGGACTCCACCACGTACTGACAGGAAAGAGGCAGAGACTTCATTTTCAGTCTTACAGAGATCAGAGGAACAAAATGACTATAAATGCCATTGTCTGAATGACCTGTGTATAGCAACAAACACCAGCTTGGCTTGCTGTGGTTTTGATGGGAATTGAGGAAGAGTTCACTGTTTTATTGTAGTGGACTGAGCCTGTGTGTGACTGCATGCACTGCAGGAACTTAAATTGAACTTTTTGAACTACCGagaatttttgaaaattaaaaagaaattataggTATGACCgccattttgtgttttgtttgtatgtaaCTGTTTTAGAAGATTTTGACAGTTAAAAGTCTGTTTTGAGTTTTCTGAGCATATTGCTTCAATGTGAATGTAGCCATATTACAGTTTCATGCATAGCTctttgctcacacacacacacacacaactgaactgaattgagagagat
>XM_034313981.1
CGCGGCTAGCTGGAGTAAGTAGATTTGTTCTGTGTGGTAGAAATAAAAGTAGACCCATAAACTAGCTTATTAGTTTCCTCTGTTCCCCTTCGCGAATCATTAGTCATTAAGCAGCAGTGATGGACTCTCTGCTTCTGCACGGAGAGGCTGAAGGTTACATCCAGGGTTTGGAAAGAGTAGCACTGCGCGACGTTGGGAGTCCCAGATTCCCATGCTGGTTCATGGATTGATACTTGTTGAAGTTTGGAAGCAGAAAGTGTTCCCTATCCTCTGCAAGCTTCAGGACTTCAGCCCAAAGAGCACCTTTCCACTGTACATGGTGATTCACCATGAAGCTACAATCATAAATCTGTTGGAGACGATCTTATACCATAAAGAATCATGTGAGGCAGCAGAGGATACTGTTGTGGACCTTGTCGATTATTGCCATCGTAAACTGACTCTGCTGGCAGGGCGCTGTGCCCGGGGGGAACTCCCCACTGAAGACAGAACCTCACACACAGAGGTCTCAAACATGAACTCTGTACAGAATCTGCAAAACCAGAGCACAATTTTAGAATTTGAGATCTCTCTCAAGGCTCTGTCTGTGCTACGCTACATTACGGATCATGTAGAAAGTTTGAGTTTGAGTGTTCTCACGAGGATGCTGAATACTCATAACTTGCCCTGTGTGCTGGTTCAACTTGTAGAGCATTGTCCCTGGAGCCGTAGTTCTGGAGGTAATCTGCAGAAGTACGAGGGTGGGAAGTGGAGAGAGATCCCTGCAGAGGACAGGCtaaaaatgaccaaactggAAGGGCAGGTGTGGATTGCTTTGCTGAATCTACTGCTTAAACCAGACTGCCAGAGGAAATATGATTTCAACAACTTCAACAAAAACCAGCTCTTAAAGCTGCGTGGATTTTTGACAGAGGTTGTTATCGATCAGCTGCCAAATCTTGCTGATCTTCAGCGTTTCCTCAGCCACTTAGCTGTTACAGACCCTGCACCTCCAAAAAAAGACCTTATCCTTGAGCAGCTACCAGAGATCTGGAATGAGATTGTTGCGGagaattctgggaaatggaaGGCCATAGCTAAACACCAAGTGAAGAAGGTGTTCAACCCATCTGAGAGTGAGCTGAGAGAACAGGCAAACAGGCTGGCTGAGACTTATAATCTTGATGTGATGGAGTATCTCATCCCAGATAAACCGAAGTGTGGTGCGTGTGGAGCAGTGGGGGCCAAGCGTTGCTCCCGCTGCCAGGGAGAGTGGTACTGCAACAGAGAATGCCAGGTGAAGCATTGGCCCAAGCACAAACTTGCGTGCCAAATGATTGCAGAAGCCTCAGAGAAACTCCAGAAAGAGCTGAACATCAAGACCTGAGGGACTCCACCACGTACTGACAGGAAAGAGGCAGAGACTTCATTTTCAGTCTTACAGAGATCAGAGGAACAAAATGACTATAAATGCCATTGTCTGAATGACCTGTGTATAGCAACAAACACCAGCTTGGCTTGCTGTGGTTTTGATGGGAATTGAGGAAGAGTTCACTGTTTTATTGTAGTGGACTGAGCCTGTGTGTGACTGCATGCACTGCAGGAACTTAAATTGAACTTTTTGAACTACCGagaatttttgaaaattaaaaagaaattataggTATGACCgccattttgtgttttgtttgtatgtaaCTGTTTTAGAAGATTTTGACAGTTAAAAGTCTGTTTTGAGTTTTCTGAGCATATTGCTTCAATGTGAATGTAGCCATATTACAGTTTCATGCATAGCTctttgctcacacacacacacacacaactgaactgaattgagagagat

Function

symbol description
zmynd10 Predicted to enable metal ion binding activity. Predicted to be involved in cilium assembly and positive regulation of motile cilium assembly. Predicted to be located in apical plasma membrane and dynein axonemal particle. Predicted to be active in centriolar satellite and cytoplasm. Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; nervous system; neural tube; and pronephric duct. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 22. Orthologous to human ZMYND10 (zinc finger MYND-type containing 10).

NR:

description
zinc finger MYND domain-containing protein 10 isoform X2

GO:

id name namespace
GO:0044458 motile cilium assembly biological_process
GO:0036158 outer dynein arm assembly biological_process
GO:0036159 inner dynein arm assembly biological_process
GO:0034451 centriolar satellite cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K24030 ZMYND10; zinc finger MYND domain-containing protein 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929243.2 True 1903 mRNA 0.46 13 15025127 15032562
XM_034313979.1 False 1847 mRNA 0.45 12 15025127 15031645
XM_034313981.1 False 1822 mRNA 0.45 11 15025127 15032501

Neighbor

gene id symbol gene type direction distance location
LOC113535748 rassf1 coding downstream 594 15010827 ~ 15024533 (-)
LOC113534431 grm7,LOC108271537,LOC108272196,LOC108427575,LOC107708172,LOC107549321 coding downstream 15944 14887465 ~ 15009183 (-)
tgm5l LOC108272022 coding downstream 155424 14862967 ~ 14869703 (-)
vstm2l LOC108271577 coding downstream 210680 14797637 ~ 14814447 (-)
dlgap4b LOC108272050,LOC108427631 coding downstream 323092 14600663 ~ 14702035 (-)
nprl2 nprl2 coding upstream 884 15033446 ~ 15039603 (-)
gpx1b gpx1,gpx1b,LOC103035764,LOC108436253,LOC107657914,LOC105017170 coding upstream 244343 15276905 ~ 15278713 (-)
rad18 rad18 coding upstream 473082 15505644 ~ 15568428 (-)
srgap3 srgap3,LOC107750258,LOC107657972 coding upstream 585789 15618351 ~ 15727114 (-)
cish LOC108272001 coding upstream 719651 15752213 ~ 15756341 (-)
G27600 NA non-coding downstream 14466 15010325 ~ 15010661 (-)
G27502 NA non-coding downstream 140640 14884255 ~ 14884487 (-)
G27484 NA non-coding downstream 164881 14860005 ~ 14860246 (-)
G27448 NA non-coding downstream 234486 14790431 ~ 14790641 (-)
G27303 NA non-coding downstream 532288 14492637 ~ 14492839 (-)
G27652 NA non-coding upstream 32323 15064885 ~ 15065211 (-)
G27699 NA non-coding upstream 97441 15130003 ~ 15130260 (-)
G27705 NA non-coding upstream 112143 15144705 ~ 15146155 (-)
G27706 NA non-coding upstream 118250 15150812 ~ 15151049 (-)
G27801 sec61a1,LOC103036990,LOC108436273,LOC108272151,LOC107384934 non-coding upstream 211753 15244315 ~ 15246353 (-)
pxmp4 pxmp4,LOC103464829 other downstream 149137 14872948 ~ 14875990 (-)
G27107 LOC108272123 other downstream 966682 14050401 ~ 14058445 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other downstream 1117938 13864944 ~ 13907189 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other downstream 1377950 13640381 ~ 13647177 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other downstream 1390383 13632262 ~ 13634744 (-)
G27843 NA other upstream 264747 15297309 ~ 15299019 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other upstream 424073 15456635 ~ 15461001 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other upstream 429388 15461950 ~ 15495209 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other upstream 1093268 16125830 ~ 16135715 (-)
G29158 NA other upstream 2240393 17272955 ~ 17280173 (-)

Expression


Co-expression Network