nprl2 (nprl2)


Basic Information

Item Value
gene id nprl2
gene name nprl2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15033446 ~ 15039603 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929254.2
ataccGAACGGAGAGAATACTGGACAACAATCCGGCGATATTGTAGTCGGCTTCACACTGACAATCATGGGCACTAACAAGCGAAttgagtgtgtattttttagTGAATTTCATCCAACTCTTGGACCTAAAATCACCTATCAGgTTCCTGAAGAATATATATCAAGGGAGTTGTTTGATACAGTGCAAGTGTACATTATCACCAAACCTGAGCTACAGAATAAGCTCATTACAGTGACTGCAATGGATAAGAAGCTAATTGGATGTCCAGTGTGCATAGAGCATAAAAAATACAGTCGCAACGCCTTACTCTTCAACTTAGGTCTTGTGTGTGATGCTCAGACGAAGACATGTGCCCTTGAGCCCATAGTGAAGAAACTTTCACAATACCTTACAACTCTGGAGCTGGAGAGTGGCTTTATTTCAAATGAGGAGAGTAAACAGAAGCTGTTGCCCATCATGTCTACATTACTTGAGGAGCTCAACGCAACAGGAGCCTGTACTCTTCCTATTGATGAGTCAAATACAATTCACCTGAAGCTGATTGAGCAGAGGAAAGATCCCATCATTGTTCAGGAGTATGATGTTCCAGTCTTCACTCAAACTAAGGAACGCTATATTAAGTCTCAGTGGGATCTCACCACACAGCAGATTCTGCCCTACATCGATGGATATCGACACATACAGAAGATTTCCGCTGAGGCTGATGTTGAGTTGAACTTAGTACGAATCGCCATTCAGAACTTACTGTATTATGGAGTTGTAACACTAGTGTCAATATTTCAGTATTCTAATGTTTACTGCCCAACACCTAAAGTCCAGAGCCTGATAGATGACAAAGCTGTTCAGGAAGAATGTCTGCATTATGTCAGTAAACCTGGACAGCGAGTGAGCCTCCGAGATGTTTTCCAGCTTTATTGTGGTTTGACTCCAGGAACTACAGTGCGTGACCTGTGTTCCCGCTATGCTCAGCAACTACAAAGGGTAGATGAGAGAAAGCTGATCCAGTTTGGTTTAATGAAGGGCCTGATTCGCCGGTTGCAGAAATATCCTGTTAAAGTTGTTCGAGATGAGAGGAGTCGTCCTCCAAAACTTTATACTGGTTGCCACAGTTATGATGAGATCTGCTGCAAAACTGGAATGAGTTACAAGGAGCTGGATGAGCGATTAGAAAATGACCCCAATATTATCATCTGCTGGAAGTGATGTCATATTAAATATGGATTTGTGGATTCATTTATCTGATGAGGTAGACCAGCATATGCAGTTGAGCTGTAAGGCAGTCGGTGGGACCACAGCCTGAGACGCATAAGCAAGTGTGTCAAGTGGCCCATCCTCACCCACGGCCTGACCCAAAAACCAAGGACATacacagtcagctccagaattattggcacccttggaaAAGTTGGGTAAAAAAGgttatggggggaaaaatgtatttgtcattaattagcttaatctcgCACCgaaatatgagagaaatctaatctttaatataaacagtgttTAACAAAACCACAACTATTGGTAACCATAGaactcatttttaaagtttacCCGAGTGTTTAGGAGCTAAATTTTTAACTGTTTCTCTAGAAACTTACTGTACCTTGCTTAACTTTTACTATATCTACAATAAGTAGATATTGTAGTTGCTCTCTGGATTCTTATATATACATTCCtatctttccattttctttattCCACCTTCTTGATAGGAAATTGTTGCTCTCATTTCTAACCTTGCTGTTCAGCACAGAAACTGAAGTTTTGGTCTCCCCTAGGATCTAGAAACTGAGATCGCAAAACATTCATCCTGTGACcagttttctgactttttaagGTTTGATTTACATGCATGTGTGAAGCCATTAACTTGAATTTTCTGGAAAAGGCAACCTGGTTTTGGGCTAAAATATTCTGGTACTTAGAATGAAGAATATATGATATCATATGTTTTTATAAGTGCTGAAATGCGCAGTTGCATTTCAGCACTTGCGTGTACAAAAAAGTCTACAAATGTGtggaaatatgttaaataaatatgtttggACAACATATTAGCGGttgtaaatgaaatttttttaaatgggtaAGTTGATTTTGCTCAAGTTATTTTCAACCGGTAACAGTAAAATTATGGACATTTAACT

Function

symbol description
nprl2 Predicted to be involved in several processes, including cellular response to starvation; negative regulation of TOR signaling; and regulation of autophagosome assembly. Predicted to be part of GATOR1 complex. Human ortholog(s) of this gene implicated in focal epilepsy. Orthologous to human NPRL2 (NPR2 like, GATOR1 complex subunit).

NR:

description
Tumor suppressor candidate 4

GO: NA

KEGG:

id description
K20405 NPRL2; nitrogen permease regulator 2-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929254.2 True 2156 mRNA 0.39 11 15033446 15039603

Neighbor

gene id symbol gene type direction distance location
zmynd10 zmynd10 coding downstream 884 15025127 ~ 15032562 (-)
LOC113535748 rassf1 coding downstream 8913 15010827 ~ 15024533 (-)
LOC113534431 grm7,LOC108271537,LOC108272196,LOC108427575,LOC107708172,LOC107549321 coding downstream 24263 14887465 ~ 15009183 (-)
tgm5l LOC108272022 coding downstream 163743 14862967 ~ 14869703 (-)
vstm2l LOC108271577 coding downstream 218999 14797637 ~ 14814447 (-)
gpx1b gpx1,gpx1b,LOC103035764,LOC108436253,LOC107657914,LOC105017170 coding upstream 237302 15276905 ~ 15278713 (-)
rad18 rad18 coding upstream 466041 15505644 ~ 15568428 (-)
srgap3 srgap3,LOC107750258,LOC107657972 coding upstream 578748 15618351 ~ 15727114 (-)
cish LOC108272001 coding upstream 712610 15752213 ~ 15756341 (-)
LOC113530515 wdr82,twf2,LOC107673495,LOC107567090,LOC107712117,LOC107750262,LOC106582800 coding upstream 722933 15762536 ~ 15775878 (-)
G27600 NA non-coding downstream 22785 15010325 ~ 15010661 (-)
G27502 NA non-coding downstream 148959 14884255 ~ 14884487 (-)
G27484 NA non-coding downstream 173200 14860005 ~ 14860246 (-)
G27448 NA non-coding downstream 242805 14790431 ~ 14790641 (-)
G27303 NA non-coding downstream 540607 14492637 ~ 14492839 (-)
G27652 NA non-coding upstream 25282 15064885 ~ 15065211 (-)
G27699 NA non-coding upstream 90400 15130003 ~ 15130260 (-)
G27705 NA non-coding upstream 105102 15144705 ~ 15146155 (-)
G27706 NA non-coding upstream 111209 15150812 ~ 15151049 (-)
G27801 sec61a1,LOC103036990,LOC108436273,LOC108272151,LOC107384934 non-coding upstream 204712 15244315 ~ 15246353 (-)
pxmp4 pxmp4,LOC103464829 other downstream 157456 14872948 ~ 14875990 (-)
G27107 LOC108272123 other downstream 975001 14050401 ~ 14058445 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other downstream 1126257 13864944 ~ 13907189 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other downstream 1386269 13640381 ~ 13647177 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other downstream 1398702 13632262 ~ 13634744 (-)
G27843 NA other upstream 257706 15297309 ~ 15299019 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other upstream 417032 15456635 ~ 15461001 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other upstream 422347 15461950 ~ 15495209 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other upstream 1086227 16125830 ~ 16135715 (-)
G29158 NA other upstream 2233352 17272955 ~ 17280173 (-)

Expression


Co-expression Network