arpc4 (arpc4,LOC103358720,LOC107721188,LOC100696600)


Basic Information

Item Value
gene id arpc4
gene name arpc4,LOC103358720,LOC107721188,LOC100696600
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16234025 ~ 16239942 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929639.2
TATTACGTCTGTGGTCTTCCTGGACACCCCCATGCTAACTCTGTTAGTGGTATCGCCCACGGAGCGACGAGGAACACGGAAGTGGTTCGCTGTTTGTAGCATTTCCGCTTTCAGACAAGAGCCGGAAAAGAGAAATGACAGCGACTCTGCGTCCATACCTGAATGCAGTACGAGCAACACTGCAGGCAGCTCTCTGCCTGGAAAACTTCTCCTCACAGGTGGTCGAGCGCCACAACAAACCCGAGGTTGAAGTCCGGAGCAGTAAGGAATTGTTGCTTCAGCCAGTTGTGATTAGCAGAAATGATAAAGAGAAGGTCCTTATAGAAGGTTCAATCAACTCTGTTCGTGTCAGCATTGCAGTAAAGCAGGCTGATGAGATTGAGAAGATTCTGTGCCACAAGTTCATGCGCTTTATGATGATGAGAGCTGAGAACTTTTTCATTCTGCGGAGAAAACCAGTGGAGGGCTACGATATCAGTTTCCTCATCACTAACTTTCACACAGAGCAGATGTATAAGCACAAGTTGGTGGATTTTGTGATCCATTTTATGGAGGAAATTGATAAGGAAATCAGCGAGATGAAGCTGTCAGTCAATGCAAGAGCACGAATAGTTGCTGAAGAATTCCTCAagaatttttaagGAAGTACCTGCTCACCCTCAGCACACTGCAACACTTCACCATGGTCAGCATAAGCAGGGTGGAGGTTTGGGGCCTTGAAAGTCAAGCAAgcaacagagagtgagagagaggacacAAAGTGTGTACATCAACATGGAGAAACATGGACCAAGTGGATTCAGGGCATGTGTCCTCGCCACAGGACTGAATTTGGAGTATTGCAGAGATCTCGACCAAAAGCACTCATGGAATTCAAAGACTCTCTGTACTGTTCAGCTGTACTGTTCAGTAGttattaaaattgcattatTAATCCTCTTGTGCCAACTTAATTTGCTTGCTTGCTAACTTGCtccaaaaacattctatacTACTTAATGATCTTTTCTATTAGTAATTTCCACTCATCTCTTCCCTTCTACAGTTTGCCCCTTTAAACtgatcattattttttatagttaAGTGCTCACAATGCTGCAGTATGGATTCACCTCATCTTCCTCCATGCTCATGAATCATGATATGCATAGATGCTGAACAAACCTTTAATATCAGGGTGGAAGTCTTTAATGTTCTTGAGcatgaaagggaaaaaaagagccaaTGTTCCGATAATATAAACTGTGTTAATGATCTtgaattatttgtaaaatatatgtatattgtgtGCATAGTGACATTTTCATGTCTGATTTTGATATATTGACCTTCACGCTATTGCACATGGATTACACAAGACCTTATTAGTTGTAGAGACAAGATTGAAACAGTTATGATGAATAAACATCCCTTTATTGCTT

Function

symbol description
arpc4 Predicted to enable actin binding activity. Predicted to act upstream of or within Arp2/3 complex-mediated actin nucleation and actin filament polymerization. Predicted to be located in actin cytoskeleton; cell projection; and cytoplasm. Predicted to be part of Arp2/3 protein complex. Orthologous to human ARPC4 (actin related protein 2/3 complex subunit 4).

NR:

description
Actin-related protein 2/3 complex subunit 4

GO:

id name namespace
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0005885 Arp2/3 protein complex cellular_component

KEGG:

id description
K05755 ARPC4; actin related protein 2/3 complex, subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929639.2 True 1421 mRNA 0.42 6 16234025 16239942

Neighbor

gene id symbol gene type direction distance location
LOC113530143 LOC100304607,LOC107667340 coding upstream 687 16231892 ~ 16233338 (+)
LOC113527941 rab7a,LOC108271868,LOC106518505,LOC101061812,LOC105017315,LOC108254780 coding upstream 3243 16227005 ~ 16230782 (+)
eefsec eefsec,LOC107667374,LOC107584423,LOC107568193 coding upstream 38765 16188335 ~ 16195260 (+)
rft1 rft1,LOC107721169,LOC107568194,LOC107584424,LOC107673548 coding upstream 53891 16175199 ~ 16180134 (+)
sirt4 sirt4 coding upstream 62801 16166729 ~ 16171224 (+)
myhb myhb,LOC108271865,LOC108440470,LOC107721187,LOC108254796,LOC107568178,LOC108443910,LOC107667337 coding downstream 5365 16245307 ~ 16258431 (+)
p4htm p4htm,LOC108440486 coding downstream 19490 16259432 ~ 16268579 (+)
kbtbd12 kbtbd12,LOC107721181,LOC107712091,LOC107673613,LOC107667403 coding downstream 44011 16283953 ~ 16288642 (+)
akap14 akap14 coding downstream 61326 16301268 ~ 16302456 (+)
c2h1orf159 c11h1orf159 coding downstream 66119 16306061 ~ 16313244 (+)
G28287 NA non-coding upstream 78781 16154986 ~ 16155244 (+)
G28162 NA non-coding upstream 110885 16122896 ~ 16123140 (+)
G28160 NA non-coding upstream 111693 16121977 ~ 16122332 (+)
G28156 NA non-coding upstream 127753 16106043 ~ 16106272 (+)
G28150 NA non-coding upstream 157475 16073222 ~ 16076550 (+)
G28361 NA non-coding downstream 28767 16268709 ~ 16269552 (+)
G28402 LOC108271943 non-coding downstream 93509 16333451 ~ 16334652 (+)
G28404 NA non-coding downstream 96250 16336192 ~ 16336694 (+)
G28405 NA non-coding downstream 105703 16345645 ~ 16346086 (+)
G28410 NA non-coding downstream 118140 16358082 ~ 16361347 (+)
mustn1a LOC108272082,LOC108439813 other upstream 51716 16181171 ~ 16182309 (+)
slc2a11a LOC108271728,LOC108440316 other upstream 130777 16083289 ~ 16103248 (+)
LOC113534559 LOC108272085 other upstream 443581 15788626 ~ 15790444 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other upstream 929531 15278822 ~ 15304494 (+)
tshba tshb,LOC108271948 other upstream 2728021 13490161 ~ 13506004 (+)
tomm6 tomm6 other downstream 158303 16398245 ~ 16401111 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other downstream 2534828 18774770 ~ 18835721 (+)
trnai-aau NA other downstream 2577460 18817402 ~ 18817475 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other downstream 2692741 18932683 ~ 18948737 (+)
LOC113533886 espnl other downstream 2821155 19061097 ~ 19087211 (+)

Expression


Co-expression Network