gpr17 (gpr17,LOC107717943,LOC107752663,LOC107694121,LOC107590682)


Basic Information

Item Value
gene id gpr17
gene name gpr17,LOC107717943,LOC107752663,LOC107694121,LOC107590682
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 19501596 ~ 19506857 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929795.2
tgaggtcagaggtcacgcCAGAGCCTTCCCATTGGGCTTGCTTTTGTGTAATCAAATTTGTTGCGGGCACAAAAGGAGCCACAGTAAAATATCTGGAAGACATTGCAGTGCAGGGACAGTGCAGTTCATTCGTTCATTAGCCTTGTCCTCCACCTGGTCTTTACTGCTCCACAAATGCTGCATGTAGAAGAAGCTGCTGGATAACCTTCTTCTCTCACAGCAGCTGTTAACAAACCCACGTTCAGCGCCAAACTACACCCTCTCTACTTCACTCTGCTACACTCATCTTAGTCTGCACTGCTGATCAGACGTGAGAGGAACCAACATGGCTATGACCATGGAGTCATCTCCCACCGTGCTTCCCAAACTGCTGTCCAATCAGACGACTGAGACCTGTGAGCCTGTAGACAACACGGTGGAGAATCTCCTCTTTGGCCTCTACTACATCATAGTCTTTCTTCTCGCTCTGAATGGCAACAGTCTTGCCCTGTGGATCTTCTCCCGTCAGCGAGGAGCCTCCTCTCCAGCTAACGTCTTCTTGATGCACCTTGCTGTGGCTGACCTTTcttatgttattattttgccTCTAAGAGCCACATACCACTTGACAGGAGGTCACTGGCCATTTGGAGAAGTTCCTTGCCGTGTAGCTGGCTTCCTTTTCTATGTTAACATGTATGCCAGTCTTTACTTCCTGGCTTGTGTAGCCGGGGATCGATACCTCGCTGTAGTGCATGCTGTGAGTTCATTGAGAATCCGCCATGCCCGCTTTGCCCACATAACCAGCTTTGCTCTGTGGGCTCTAGTAATTGTAGCCATGGCTCCTCTGTTGGTGACCCAGCAGACTATAGAAGCGAACGGCTCCACAGTGTGCTTGCAGTTGTATAGAGAGAAAGCTTCCCGCCGAGCTTTAGTCTCCCTCATAGTTGCATTCACACCGCCTTTCCTGGCCACACTCTCCTGCTACCTGCTCATTGTGAACAGTCTGAGAAAGGGTTTGAGGATGGAGCCAGTGCTGAAGGTGCGAGCATTGCGTACAATCGGCCTGGTCATGCTCATCTATGTGGTGTGTTTCCTGCCATACCACGTTAGCCGGGCCACATTTATCCTGGGTTATGGACATCCAGATCTGTCCTGCCAAACACAGCGAGGTCTAGCCCTGGCTAATCGTCTCACCTCCTCTCTTACCTGTCTGAATGGAGCTTTGGACCCACTGGTCTACCTTTTTGGAGCAGAGAAATTCAGAGGCACTGTGCAAAGACTCCTGTGCAGGGATAAATCAGGTGGATCTGCAGCTACCAGTGGAGATCTTAAAGGGACACATGAGAGTTCCCTGAGTGCAAAGTCAGAGTTCTGAgaaaatagcattttaaagtctgtatCTGTCACCTATAGGCCAGGTTACATACCCTATTTGGTCAGTTTAATGCTGTGTAGGTCTTCATGTATGACGTACAGGAACACTGGGTTTGGGTGTGTAGACATTTGAACATAATTTAAAGTGTTGACTGGCTGGTGTGTGATTTTCTTAACCGGAAGTGAAAAAGGGAAGTTATGCAAATGCCAAAGACATCAGCCAGTCGGTTTAGTCTTATGGTTTGTCTGAGAGTACCTGgacctaaaaataaaaacaaaagaaatgtttatttacttatattacACAATTTGACATCATTTTGACCATTAAAACCAAAAGTTACAGttaaagttttttaaaagtaactatccagagtgtattcccacctcacgcccagttCCTGctataggctctggatccaccacgaccctgaccagcataaagctTTCTGAAAGTGACTGAGTGAATAAAAGTAACAAATGTGAGTGATCAGAAGACAAATTTCATCcaacttttcatttgtttaactAACAACAAACTGCTGACAAATTATTTTCAAAGTTGTTAGGTTAAACCGAAACAGCTttttggagtttgccaaaaaaaataagCCATTTTTTTGGAGTGCTTGCAGTGCAATGTCAAATTTTGAAAAacattacatattaaaaatgcatttatttgacTTATGCTTAAAACCTAACACATTTGATTAATGTCACAGAAGTGTTTCTAATCAACGGTTGCTCAAAAACCATGTGTGGGAGAAAAAGTCCCCAAGTAAAGCAAAGCCTATATacatatgtttattattattagccaatttttaaattgttattagacattatttttatttcttgatcTGTTTGCCAATGTTTAACACGCAGCCATGTGTCATGTTAAGAAAATCATCGCTAAGCAAAGGATGCCGCAATATTATAACAGCTGCTTTTGAGAATAACTAAGTGCATATACAGATCTTCATATTATCTTAGCTGATATGTGCTCAAAATGGAATTTTGTTTTTAGCAATATTGTTGTACTACAGCAAGCCCTTTATTCTCTGCAGTACTTATGTGGCTATTCAATTCTACATATGCATTGCATTGCGTAACACTTtgtacctcttttttttttatatatttaatcgCCTTTATGTGCTTATTTTGCCTCAGTGACTCAGTGAATATGAAGCTATTTATTATTCCATTTCATTCGATCTGATGTTTCGGCACTTATATCGCTATATTTCAATATTGCTGTATAAAGCGTGTTAGATGCACCATTTTGTAATCATGTATAAATTAAACTCTTTGCTATTTTTA

Function

symbol description
gpr17 Predicted to enable G protein-coupled receptor activity. Predicted to be involved in positive regulation of Rho protein signal transduction and positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G protein-coupled signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human GPR17 (G protein-coupled receptor 17).

NR:

description
uracil nucleotide/cysteinyl leukotriene receptor

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K08404 GPR17; G protein-coupled receptor 17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929795.2 True 2682 mRNA 0.42 2 19501596 19506857

Neighbor

gene id symbol gene type direction distance location
LOC113527823 LOC108271983,LOC108427680,LOC108271985 coding upstream 989 19477978 ~ 19500607 (+)
LOC117595738 LOC108271985,LOC108271983,LOC108427680 coding upstream 26863 19465393 ~ 19474733 (+)
sap130a sap130a,LOC108271984,LOC107696772,LOC107590658,LOC107552246,LOC108427679 coding upstream 38279 19448315 ~ 19463317 (+)
amotl2a amotl2 coding upstream 64943 19427503 ~ 19436653 (+)
cep63 cep63 coding upstream 102879 19386688 ~ 19398717 (+)
inpp5d inpp5d coding downstream 2975 19509832 ~ 19532805 (+)
lpp lpp,LOC108271779,LOC108427685,LOC107717931,LOC107590653,LOC107684332,LOC107696776,LOC107752632 coding downstream 81970 19588827 ~ 19803848 (+)
tprg1 LOC108272012 coding downstream 348273 19855130 ~ 19883588 (+)
tp63 tp63,LOC107574491,LOC103365775 coding downstream 377904 19884761 ~ 19956034 (+)
rpl5b LOC103397662,LOC103368809,LOC104921761,LOC101078338,LOC107590646 coding downstream 597347 20104204 ~ 20112519 (+)
G29819 NA non-coding upstream 84688 19415605 ~ 19416908 (+)
G29792 NA non-coding upstream 242330 19259048 ~ 19259266 (+)
G29674 NA non-coding upstream 299497 19200315 ~ 19202099 (+)
G29656 NA non-coding upstream 306187 19192549 ~ 19195409 (+)
G29641 NA non-coding upstream 450553 19050824 ~ 19051043 (+)
LOC113533855 NA non-coding downstream 31128 19537985 ~ 19540117 (+)
G29984 NA non-coding downstream 33772 19540629 ~ 19540910 (+)
G29985 NA non-coding downstream 34082 19540939 ~ 19541248 (+)
LOC117596099 NA non-coding downstream 46195 19553052 ~ 19582043 (+)
G29999 NA non-coding downstream 58953 19565810 ~ 19566023 (+)
LOC113533886 espnl other upstream 414385 19061097 ~ 19087211 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other upstream 552859 18932683 ~ 18948737 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other upstream 665875 18774770 ~ 18835721 (+)
trnai-aau NA other upstream 684121 18817402 ~ 18817475 (+)
tomm6 tomm6 other upstream 3100485 16398245 ~ 16401111 (+)
smx5 lsm2,LSM2,smx5 other downstream 27488 19534345 ~ 19537197 (+)
LOC113543059 c11h1orf146 other downstream 493189 20000046 ~ 20020226 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other downstream 1030116 20536973 ~ 20658080 (+)
insl5a insl5 other downstream 1507981 21014838 ~ 21017867 (+)
tmem69 tmem69 other downstream 3090738 22597595 ~ 22603436 (+)

Expression


Co-expression Network