LOC113536633 (LOC108271735,LOC108413697)


Basic Information

Item Value
gene id LOC113536633
gene name LOC108271735,LOC108413697
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15935781 ~ 15951487 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930704.2
TGTCCCCAAGTTAGTAATGTAGATgcttaaaaataatcttttacCTCCTTCCAGTGATATGGCGATACATAATGATCCAGAGGCTGACTTGTCTTATCCAGAGTCAAACTCAAACTCAGGAAGAATTACTACAAAGGCCAAAACTAAGGAGAGAGGCCAGTGGTCAAGTAAAGTTGAATTTCTCCTGGCTGTTGCTGGACAAATCATTGGCCTAGGAAATGTGTGGAGGTTTCCTTACTTGTGCTACAAGAATGGAGGTGGAGTGTTTTTAATACCATATTTGATCTTCCTGTTTGCCTGTGGCATTCCACTGTTTCTCCTGGAGATATCATTGGGCCAGTACACCAGTCAGGGCAGCATCACCTGCTGGAGGAAAATCTGCCCTTTGTTTCAAGGATTAGGCTATGGAAATGTAGTGGTCCTGCTGTATTGCTGCATCTACTACATTATCATCATGGCCTGGGCATTCTTCtatctcttttcctcttttagtACTGAGCTACCATGGGCTAACTGCAGCAATGCCTGGAACACTGaaatgtgtgttGACTTTGATAAAAAGGACAATTTTAGCAACTTCAGTATACCTGAGAATGCAACTTCACCTGTTAAAGAGTTCTGGGAGAGGAGAGTGCTAAATCTCACAGGCAGTGTGTATGAGCTGGGCAATGTGAGGTGGGAGCTGGCTCTGTGTCTCCTCTTGGCTTGGATCATCTGCTACTTCTGTGTGTGGAAGGGAGTGAAGTCTGCAGGCAAGGTGGTCTATTTCACTGCTACTTTTCCTTATGTGatgttggtggtgctgttggTGCGTGGACTCACATTGCCTGGAGCCGTTGATGGCATCAGATTTTACCTCTACCCAGATCCTACAcgtctcacagacacacagGTGTGGATGGATGCTGGAACTCAAATTTTTTACTCCTATACTCTTTGTATGGGCACCCTCACTGCTCTAGGAAGCTACAACAAGTACAACAACGACTGCTACAAGGACTGTATTTATCTATGCCTGTTGAACAGTGGGACCAGTTTTGTGTCTGGATTTGCCATCTTCTCTGTGCTGGGCTTCATGGCTTATGAGCAGGAGACGGACATCTCAAAAGTGGCAGAGTCAGgtcCAGGGTTGGCCTTCATTGCATACCCCAGGGCAGTTGCAATGATGCCTGTTCCACAACTATGGaccatttgttttttcatcatgATAGTATTGCTGGGCTTGGACTCAGAgTTTGTGGGGTTGGAGACATTAATGACAGCTATAACTGACCTGTACCCTTCTTACTTACTCTGTGGTTATCGGCGTGAACTCACCCTGCTCTTCATCTGTGTTGGGAGTTTCCTCATTGGCCTGGTTATGGTAACAGAGGGCGGCTTGtatattttccatttgtttGATTACTATTGCTGCAGTGGGATGACACTTCTGTTATTCGCCATTCTGCAGTCAGTGTGTATAGGGTGGGTGTATGgGGCTAATCGCTTGTATGATAATATTGAGGACATGATTGGTTATCGACCaatgttcttaataaagtatTCTTGGAAATACATCACTCCTGTAGTCTGCACTGGTACATTTGTCTTCTCTCTGGTCAAATTCACTCCTCTGAAGTTTAACAATATAATTGAATACCCCTGGTGGGGCTATGCTATTGGCTGGTGGTTCACATTCTCTTCAACTCTATTGGTTCCTCTTTGGATGATCTATGCTCTCCTCGCTTCCAGTGGCTCAATAAGACAGAGATTACATGTTCTCTGCACCCCAGAAAGAAACCTTCTTCTGAACtccagcaaaacaaaaaactgttcAACGTTTATTGGCTTCACAGCTGTACCACAAGGGCAAGAACAACCTTGAAGCAAAAGCATTGTGTTCACATTGGGGTACTTGTCTACTGTGGGGGTAACTGTCTATTTGTCTCATTGTACATCAGCTCCTGAACATAACTGTTACACACTGTGATTTGATAAACAGTTTCATGCAAAATTTATAATCTACAATATTAGAGTATTTCATGTTACTCCGTGTGCATCAAGACCACATAGCCTATTGCATggaattatgttttttgtccTTGCTAAATGAACATTCATTACTTTGATATTGCAAAAGACTGATGTATGCAGTGAAGGCCAATACTAGATCAAATCATCACTCCATACATAAAGTATATTTGATAAAATGACAGTAgaggcaatgtttttttttccagctgctTGTTTTGTTGACAGTGCAATAACCAGTGCTTGTTTAATAAATTTCTGTGTTCTGACAACACAGAC

Function

NR:

description
PREDICTED: sodium- and chloride-dependent GABA transporter 2-like isoform X1

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K03308 TC.NSS; neurotransmitter:Na+ symporter, NSS family

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930704.2 True 2289 mRNA 0.43 14 15935781 15951487

Neighbor

gene id symbol gene type direction distance location
LOC113536620 slc6a13l,LOC108271591,LOC108436256,LOC107673491,LOC107567081,LOC107712076,LOC107658051 coding downstream 25709 15899291 ~ 15910072 (-)
cadpsb cadpsb,LOC108271493,LOC108436257,LOC107673496 coding downstream 61063 15795801 ~ 15874718 (-)
cplane2 rsg1,LOC107673497,LOC107750284,LOC107712114 coding downstream 141005 15791568 ~ 15794776 (-)
wdr82 wdr82,swd2,LOC106565976 coding downstream 151537 15778190 ~ 15784244 (-)
LOC113530515 wdr82,twf2,LOC107673495,LOC107567090,LOC107712117,LOC107750262,LOC106582800 coding downstream 159903 15762536 ~ 15775878 (-)
LOC113536636 LOC108271735,LOC108413697,LOC105889205 coding upstream 8677 15960164 ~ 15975984 (-)
fkbp5 fkbp5,LOC108271732,LOC108413698,LOC107712109,LOC107673486,LOC107667344 coding upstream 60511 16011998 ~ 16024469 (-)
entpd8 entpd8 coding upstream 96506 16047993 ~ 16056687 (-)
tgfa LOC108271731 coding upstream 122559 16074046 ~ 16083778 (-)
patz1 patz1 coding upstream 155342 16106829 ~ 16119848 (-)
G28232 NA non-coding downstream 1923 15929041 ~ 15933858 (-)
G28207 NA non-coding downstream 147628 15786853 ~ 15788153 (-)
G28191 NA non-coding downstream 210325 15720767 ~ 15725456 (-)
G28182 NA non-coding downstream 253737 15681570 ~ 15682044 (-)
G28173 NA non-coding downstream 319033 15615025 ~ 15616748 (-)
G28256 NA non-coding upstream 84346 16035833 ~ 16045675 (-)
G28258 NA non-coding upstream 86496 16037983 ~ 16039793 (-)
G28278 NA non-coding upstream 171242 16122729 ~ 16122949 (-)
G28325 NA non-coding upstream 229588 16181075 ~ 16181718 (-)
G28331 NA non-coding upstream 245087 16196574 ~ 16196867 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 440572 15461950 ~ 15495209 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other downstream 474780 15456635 ~ 15461001 (-)
G27843 NA other downstream 636762 15297309 ~ 15299019 (-)
pxmp4 pxmp4,LOC103464829 other downstream 1059791 14872948 ~ 14875990 (-)
G27107 LOC108272123 other downstream 1877336 14050401 ~ 14058445 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other upstream 174343 16125830 ~ 16135715 (-)
G29158 NA other upstream 1321468 17272955 ~ 17280173 (-)
si:dkey-44g17.6 LOC108271932,LOC107705318,LOC103038496,LOC107564436,LOC107555383,LOC105895117,LOC107678346 other upstream 1520843 17472330 ~ 17529315 (-)
G29263 NA other upstream 1997670 17949157 ~ 17949718 (-)
G29279 NA other upstream 2119500 18070987 ~ 18072909 (-)

Expression


Co-expression Network