LOC113536767 (LOC108272161)


Basic Information

Item Value
gene id LOC113536767
gene name LOC108272161
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18298375 ~ 18413955 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930929.2
ACTTCAGACTGGCTGAGCCAGGCAGATGTTTTTCTCAACATGCACACAGAATGACTCAGTCCTTGCTACAGTCACTTCCTGTATGGGCACTGCGAAGAAAAAAACGAGGAGATCTGACTGGCTCCCTGTTTGCCTGtttcctgaaaaacaaaaacagtgaggCATACATGTTGGAAAAGTTTGGGGCCCGGGTCTCTGTCAGTTAAGAACAACAGATCCCTGCACGTGTGTGAGTGCTTGGCATGTGTGTCTACTGTACAGCTGCCAACCTACAGAACAGTGTCCTGCATCAGTGTTAGACGTGTCCATGAGAACGTCTGCCCACAAGAAGAGAGAAGGGGATATAGGACAGGAAATGGTAAAGTAAAAGCATTGAAAAGCGCTCGAAAGAGTACAAGAAGGTGTCAAAGCAATGATGGATGATGGCTGTGCAGATACCTGTAAAGTTCTCGTTGCAGaaaCTCCTGAGTGCTTCATCTGCAGAGAAGTGCAGCTGGTGGACGGAGAACAACTGAAAAGATTTTGTGACTGCAAGAATCTCATGGCACATCATAGTTGCCTGCTCACTTGGGTCAGAATGGGGCTGAAGAGGGAGGATCAGCTGCGGTGTCGTGTGTGTAATGCAGAGTACCAGCAGCAGAGAGTTGCCCCATGGCAGTCCGTGGCGTCTCAGTGGCGTGTGTGGCCCGTGCTGGTGGTGGCAGTGGTGATGGCGGCCCTGGTTCCCTACACTGTGTTCTGCATGCTGACAGTCTTTGATAACGACCATCCACATACTCTCttcaacatggctgccatcTGCTTTGGCATCCTCTCTGAAATCCTGCTGCTCAGGCTCTTATACTGCTATATCACCAACCATTTCCGGAAAGCACAGCGGGCATCCTTCAGTCTTCAACCTCGGAACCTGGAGGAGGTGCAGGAGgctggggtcagaggtcacgaCCATAAGGCAGATGCCCTTTGGCAGTGGAAAAGCAGCCCTGTGGTGGAAAAGGCAAAGCAGATTGACTCACAGTGATTCATTTAACTTCTGGACAGGATGGAGTGTCTGCCTGCTGCCCTGATGGCTGAGAGTCAGCAGTACCAACCTGGCGCAAGCAGCAGAGCATCACATACCCAGTCTCACATGGAATTCACAGGAATGTGAATAATGATTGTGAACAATTTTGTTGGATTTCATTTGACCCTTACCCTGACCTTACCCATTCAAAACGTGGCATATTTGTTGTTAATATTGCTTCAATAATTTGTGTGTGGAAGGATATAAGATGCTTCTGGCTTTGATGTTTGCCTATTTCCTCTCTTGTTGCACTTGAATTGGGTTAAAGCCAAAGTCCGATGCTGTCCAAACATGGCTGGTGTGGATCCAGAATTTCATTCCAACCAGAAGCACACCTGATTCGGCTGAGCAAACTCTTGCTTAATGAGTTATTATTGCTTGTTCAGTCGAGTCTGATGTATTCTCACTGGTAGGAAGCATGCACTGATTCACTCCCAGTCTTTGTAGTTGAGGATAACATGTATGTTTAGAACAAGTTGTAtgtgttacatttaaattttgtatttgttaattGCACTTGtcacttttaaaaaagttaCTTAGAACTCCGTAGTGTAAGTGTACACTTCCCGTAAGTGTAGCTAAAGTGTAACATGAGCAGGTGATCATCCAGGTCCCCAATAATCATGATTCTGACCACGTTAATTCCTTAAACTCTAATGGCAAGACAAGAGAATTGTCTTTTCTGACAACTCTGCAATCTTTGATTATCAGTAAATTGTAAATGAATTTACATTTCTGccaattttgtttttgtttcgaGAAATACTGACCTGACTGTGAAATATTGACTGTGAAATATTGATATAGACTGGCATCCTGCAGTGtgtttactctcatgcaggACAGAGTGGGAGGTCTGGTATGAAGTTTGTGGGACAAAGAGGGATAGATTTCAGTAACATTCAGTAAAATGCCATTAAAACCCTTACttgaaatgagcaaaatgatAAACTGCCAATTTGTTTTGGTTTTCCAAAAA
>XM_034300733.1
GTTGATGACTTCAGACTGGCTGAGCCAGGCAGATGTTTTTCTCAACATGCACACAGAATGACTCAGTCCTTGCTACAGTCACTTCCTGTATGGGCACTGCGAAGAAAAAAACGAGGAGATCTGACTGGCTCCCTGTTTGCCTGtttcctgaaaaacaaaaacagtgaggCATACATGTTGGAAAAGTTTGGGGCCCGGGTCTCTGTCAGTTAAGAACAACAGATCCCTGCACGTGTGTGAGTGCTTGGCATGTGTGTCTACTGTACAGCTGCCAACCTACAGAACAGTGTCCTGCATCAGTGTTAGACGTGTCCATGAGAACGTCTGCCCACAAGAAGAGAGAAGGGGATATAGGACAGGAAATGGTAAAGTAAAAGCATTGAAAAGCGCTCGAAAGAGTACAAGAAGGTGTCAAAGCAATGATGGATGATGGCTGTGCAGATACCTGTAAAGTTCTCGTTGCAGaaaCTCCTGAGTGCTTCATCTGCAGAGAAGTGCAGCTGGTGGACGGAGAACAACTGAAAAGATTTTGTGACTGCAAGAATCTCATGGCACATCATAGTTGCCTGCTCACTTGGGTCAGAATGGGGCTGAAGAGGGAGGATCAGCTGCGGTGTCGTGTGTGTAATGCAGAGTACCAGCAGCAGAGAGTTGCCCCATGGCAGTCCGTGGCGTCTCAGTGGCGTGTGTGGCCCGTGCTGGTGGTGGCAGTGGTGATGGCGGCCCTGGTTCCCTACACTGTGTTCTGCATGCTGACAGTCTTTGATAACGACCATCCACATACTCTCttcaacatggctgccatcTGCTTTGGCATCCTCTCTGAAATCCTGCTGCTCAGGTTGCCTGGCAACCTGTAGTGGCCCAGCTCTCCAAAACCGAGATGTTCTTGATTGCCAGAGTGAATGACTGTTGTAATGAATCTCTCTCTGAAAAAATACTTAGATATGGATGCCCTCATGAGACACCAAGGTGACTCGTGTCACTATAACTGATGACATGGCAAGTCTGTACATGACCTCACTAGTGCACTGGACCAGCTGAGCGTAAGACAGAGAACTGACTCAAAGAAAATACATAATTCAGATTTTCAATTAAGGATTCCTCTTTTAGGGGTGTTCTTATTAACTGATGCTTGGGTTAATTGGGGGAACCATTTGGAGGAGGTCAGACCATTTGTGTTGAAAtggtcatttgcatatcaagcattttttaaaaatataaataagtagGCTGCATATAGATTTTTATATGACATATAAGAGTAAAGAAATCCTCATTGATTCTACCTGCATATATTATGTTGAATGTCCAATACAAAATACTCTGTGTTttc

Function

NR:

description
PREDICTED: uncharacterized protein LOC108272161

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930929.2 True 2045 mRNA 0.45 5 18298382 18413955
XM_034300733.1 False 1336 mRNA 0.46 5 18298375 18411183

Neighbor

gene id symbol gene type direction distance location
LOC113532395 kyat3,ccbl2,LOC100332215 coding upstream 151458 18139055 ~ 18146917 (+)
barhl2 barhl2,LOC107749991 coding upstream 375556 17918400 ~ 17922819 (+)
znf644b LOC108271612 coding upstream 457393 17804545 ~ 17840982 (+)
tgfbr3 tgfbr3 coding upstream 531095 17666584 ~ 17767280 (+)
gadd45ab gadd45a,gadd45ab,LOC108272203,LOC107670797,LOC107555372,LOC107678351 coding upstream 830217 17465581 ~ 17468158 (+)
dzip1l LOC108271535 coding downstream 187004 18600959 ~ 18614825 (+)
LOC113527312 NA coding downstream 427482 18841437 ~ 18857162 (+)
farp2 farp2 coding downstream 444484 18858439 ~ 18917006 (+)
atg4b atg4b coding downstream 537734 18951689 ~ 18957780 (+)
kif1aa kif1a,kif1aa,LOC108427666,LOC107593169 coding downstream 574048 18988003 ~ 19049750 (+)
G29281 znf326 non-coding upstream 212731 18083719 ~ 18085644 (+)
G29106 NA non-coding upstream 533602 17694754 ~ 17764773 (+)
G29105 NA non-coding upstream 609640 17683821 ~ 17688735 (+)
G29036 NA non-coding upstream 763024 17530575 ~ 17535351 (+)
G28997 NA non-coding upstream 872052 17423821 ~ 17426323 (+)
LOC113530672 NA non-coding downstream 50929 18464884 ~ 18467320 (+)
G29561 sox14,LOC103365676,LOC100695210 non-coding downstream 274698 18688653 ~ 18691007 (+)
G29640 NA non-coding downstream 636271 19050226 ~ 19050438 (+)
G29641 NA non-coding downstream 636869 19050824 ~ 19051043 (+)
G29656 NA non-coding downstream 778594 19192549 ~ 19195409 (+)
tomm6 tomm6 other upstream 1897264 16398245 ~ 16401111 (+)
mustn1a LOC108272082,LOC108439813 other upstream 2116066 16181171 ~ 16182309 (+)
slc2a11a LOC108271728,LOC108440316 other upstream 2195127 16083289 ~ 16103248 (+)
LOC113534559 LOC108272085 other upstream 2507931 15788626 ~ 15790444 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other upstream 2993881 15278822 ~ 15304494 (+)
G29569 hdlbpa,hdlbp,LOC107694132,LOC107733253 other downstream 360815 18774770 ~ 18835721 (+)
trnai-aau NA other downstream 403447 18817402 ~ 18817475 (+)
boka bok,LOC107733256,LOC107752647,LOC107694130,LOC107696759 other downstream 518728 18932683 ~ 18948737 (+)
LOC113533886 espnl other downstream 647142 19061097 ~ 19087211 (+)
smx5 lsm2,LSM2,smx5 other downstream 1120390 19534345 ~ 19537197 (+)

Expression


Co-expression Network