LOC113536922 (LOC108271893,LOC108436255)


Basic Information

Item Value
gene id LOC113536922
gene name LOC108271893,LOC108436255
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15052308 ~ 15063316 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931131.2
CCGGTCCACGGCTCGTATAAGAAAGTGCGCATTACCAGCAGCAGTTCCACCTCTGAATCATTCATGCTCGTATCTAAGTTAAACAAGGGATTTAATCATCGTCATGATTTGGACAATCCTTCTGCTACTCAATGGGATCCtgttcttttatttcctttctaaTCGGACGCGGTCCAAAAGAGAACCACCTTTGGACAAAGGAGTTATCCCATGGTTGGGGCATGCGCTGGATTTTGGAAAGGACGCTGCCAAATTTTTAACaagaatgaaacagaaacatggaGACATATTTACGGTCCGTGTGGCTGGACGTTACGTTACCGTCTTACTGGATCCCAATTCCTATGACTCTGTACTTCAGGACACAACATCTCTTGACTTTGCACGCTATGCTCAGGTGCTGATGGAACGGATTTTTAATTTGAGGCTTCCAAATTACAAACCTGAGACAGAGAAGGCCATAATGAGAAGGCATTTCCAGGGCGAGAGCCTGTTACGCTTGAACCACGTCATGGAGAACCACCTGCGAACACTGCTATCACAGGAGACAGAGGCCCTAAACCAGTCTGGCTGGAAACAAGACGGGCTTTTCGACTTCTGCTACAGCCTGATGTTTAGAGCTGGGTATCTCACACTCTTTGGTGGAGAACAGAACAACAATTGCGCTGATGCTGCCAATGTTTATACAGAGTACCACAAATTCGATGGCCTCTTGATGAAGATGGCTCGCAGCACCCTAAAGTCTGGGGAGAAGCAGACCGCAGGCTCAGTGAAGCAGAGGTTGTGGGAGTTGCTGGCACAGGCTGGATTGAGGCAGGAGTCCAGTTTGTGGCTGCAGAGTTACAGACATCACTTGCAGGCAGAGGGCGCTGATGAGGAAACACAGAGAAAGGCCATGCTGTTACAGCTCTGGGCCACACAGGGTAATGTGGGCCCTGCTGCATTTTGGCTCCTGGCCTTCCTGCTAACCCACTCAGAGGCCATGAGGGAAGTGAGAAAGGAGTTTAAGAGTGTCGGAGTGCCTGGAACtaacacactcaacactcaggAACAGACACCTGTGTTTGACAGTGTGCTGGAGGAGACTCTCCGCCTGACCGCTGCCCCTTTCATCACTCGGGAGGTCCTGCAGGACAAGACACTGTGCATGGCAGATGGACAAGAATACGATCTGAGGAAGGGTGACCGTGTCTGTCTGTTTCCATTCATAAGTCCACAGATGGACccagaaatacattttgaacCTGAGaaattcaAGTATGACAGGTTTCTTAAGGCAGATAGAACAGTAAAAAAAGACTTCTTTAAAGGTGGGAGGAGGCTGAAGTATTACACCATGCCTTGGGGAGCAGGGACCAATGCGTGCGTGGGAAAGCCATTTGCCATCCAGTCCATCAGACAGTTTGTGTTTCTGGTTCTGTTCCATCTGGACATTGAGCTGCATGACCCTGAAGCTCAGGTGCCTGAAGGGGATGTCATTCGCTATGGTTTTGGAATGCTACAGCCGAACAAGGAGCTTCAAATCCGATACAAACGCAGAGAGCACCCTTTTTCCCAATAACAGTCCACCTGTACCAATTACCCAGCTCAcctgtacatatttatttaacattttttcatactttttatatatgaCTGTAcataattttgtatatatttcaaTACTTTGTATCTTACTTGTTTGCAATTGTATATTATCATTGTCACTTTATGAAAACTTGTGGGAAAATGCTATATTTACAACAAGGATATAGTTTTATGCATTTTGAAGGGGgttttgaataaacaaattatcTAACAA

Function

NR:

description
PREDICTED: prostacyclin synthase-like

GO: NA

KEGG:

id description
K01831 PTGIS, CYP8A; prostacyclin synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931131.2 True 1801 mRNA 0.46 10 15052308 15063316

Neighbor

gene id symbol gene type direction distance location
thumpd3 thumpd3 coding upstream 1511 15039857 ~ 15050797 (+)
tgm2b LOC108271939,LOC108427633 coding upstream 263241 14775843 ~ 14789067 (+)
quo LOC108271936,LOC107582340,LOC107690824 coding upstream 290381 14727157 ~ 14761927 (+)
myl9b myl9,LOC103045271,LOC103386121,LOC106565219,LOC100697131 coding upstream 463989 14583327 ~ 14588319 (+)
LOC113531458 LOC108271995 coding upstream 923125 14117983 ~ 14129183 (+)
LOC113524957 LOC108271998,LOC108436281 coding downstream 1579 15064895 ~ 15104302 (+)
rae1 rae1,LOC105017333 coding downstream 45686 15109002 ~ 15117087 (+)
rbm38 rbm38,LOC108271996,LOC103039930,LOC108436278 coding downstream 56175 15119491 ~ 15128259 (+)
LOC113526373 LOC108272120,LOC108436276,LOC103038804,LOC105017330 coding downstream 81334 15144650 ~ 15150334 (+)
LOC113529833 LOC108271721 coding downstream 95618 15158934 ~ 15159317 (+)
LOC117596203 NA non-coding upstream 171884 14876678 ~ 14880424 (+)
LOC117598849 NA non-coding upstream 202187 14813879 ~ 14850121 (+)
G27450 NA non-coding upstream 259686 14792411 ~ 14792622 (+)
G27311 dlgap4,LOC108272050 non-coding upstream 447762 14562217 ~ 14604546 (+)
G27309 NA non-coding upstream 496843 14555251 ~ 14555465 (+)
G27679 NA non-coding downstream 43641 15106957 ~ 15107174 (+)
G27733 NA non-coding downstream 213324 15276640 ~ 15278716 (+)
G27764 NA non-coding downstream 408216 15471532 ~ 15471756 (+)
G27769 NA non-coding downstream 426220 15489536 ~ 15489764 (+)
G27979 NA non-coding downstream 551708 15615024 ~ 15616714 (+)
tshba tshb,LOC108271948 other upstream 1546304 13490161 ~ 13506004 (+)
si:dkey-238f9.1 si:dkey-238f9.1,LOC108271548,LOC103034279,LOC108427543,LOC107567673,LOC107729782,LOC107666167,LOC106582736 other upstream 1720131 13265788 ~ 13332177 (+)
si:ch211-286o17.1 NA other upstream 2301031 12728993 ~ 12751277 (+)
G25908 LOC108272198 other upstream 2524817 12526170 ~ 12527491 (+)
si:dkeyp-67f1.2 fam3d,LOC108272267 other upstream 2838651 12204441 ~ 12213657 (+)
fancd2 fancd2,LOC107573736,LOC107749611,LOC107666962,LOC103399082 other downstream 215506 15278822 ~ 15304494 (+)
LOC113534559 LOC108272085 other downstream 725310 15788626 ~ 15790444 (+)
slc2a11a LOC108271728,LOC108440316 other downstream 1019973 16083289 ~ 16103248 (+)
mustn1a LOC108272082,LOC108439813 other downstream 1117855 16181171 ~ 16182309 (+)
tomm6 tomm6 other downstream 1334929 16398245 ~ 16401111 (+)

Expression


Co-expression Network