rgs4 (LOC108272266)


Basic Information

Item Value
gene id rgs4
gene name LOC108272266
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 23836334 ~ 23839590 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933019.2
cagagaggaggagactgCTCTAAGACCATAGCGATCCTTTCCTTGACAAATCAGAcgtgtttctctgtgtctgttggATTTGTTTTCTCTTCACCGCCACCATGTGTAAGGGGCTCGCAGCCCTACCTGCAACCTGCTTAAAAAGCGCAAAGGACATAAAGCATAAGATTGGGTTCCTGCTTCAGAAGGCTGAGCCGGTTCAAGAGCAGAAGCCTgttaaggaaaaggaaaagcCAGCTGAGGAGAAAAGCTCTGCTCCTATTGACACTGAGAAATGGAAAACCTCATTTAACAACCTGATTAATAATGATGTTGGACGGGCTGCATTCACCGCCTTTTTAAAGTCCGAGTTCAGCCAGGAGAACATTGAGTTCTGGGTGGCATGTGAGGACTTCAAGAGAACACCTGCACCACAGTTGAAAGCCAAAGCCAAGCAGATTTTCAAACAGTATGTCGACATCGATTCCCTGAATGAGGTCAATTTGGACTCTGCAACAAGAGAAGAAACTCGGAGGAACCTGGAAAAGTGTGACGTGACATGTTTCGATGAGGCGCAGAGTAAGATTTTCACGCTGATGGAAAAGGACTCATACAGGCGCTTTCTGAAGTCCAAACTGTTCCTTGACCTGTCTCAGCCACGCAGGGACGAGAAACACTGCCGTCTGGAGAGGAAAGGGACCTTTACTGAGTTTAGCCAGTGTCTCCTGTCTCACTGTGCCTAAATCTAAGACAGAAATCTTTCTTAGGCTTAGAGTTTAGGGATCAGTTCACTTCTATGAGGAGAGCAAGAGAGTTAAAGGTGAAGGGTTAAGTCACTGAGGTAGATATCGAGGTAGATAATCGATCGAACACCAGAAACAGGAAATAAGGATGtgttttaatggtttttttttcaggtatatGTGGCTTTAATGTGTTTAGAATAATCTGACAAAACTCTTCAGAATCTCCAGTGTAGCATTGgtttttattactgtattttggtaattttgtattcaaacaaaaataaataatagaaaaaaaagaagccacgTTTGAAACCCTATCAGATGATGTTGTAAGAATAAAGTTTACAGTGACTAAGTGAATAACTGTTACAGACGATAAGGAAGGCCTGGGCTGCATAACTATTTAATCTGTGTATGTTATATGTACTTTTACTGTCCAATTAGAATAAATGTAGTCTTATTAGTAATGAATGAAGCTCTGGAATATTAACGACAAACAAATGTGACAAGTTATATTAACAAAATGTGATGTCCatttgttacagtgctgtgaatTTAACAAGTCTGTCCTCTTGTACTGTCACTTTAAGTCTTATTAGAATAAATGGATTTAAGCTGTTTACATATTTGTTTACTTGCAtgtattacacatatttattgtagtatttatgaataaaaatgtccaacacaacacaaaa

Function

NR:

description
regulator of G-protein signaling 4-like

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0031018 endocrine pancreas development biological_process
GO:0007626 locomotory behavior biological_process
GO:0007409 axonogenesis biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933019.2 True 1426 mRNA 0.39 5 23836334 23839590

Neighbor

gene id symbol gene type direction distance location
il12rb2 LOC108271892 coding upstream 284390 23533178 ~ 23551944 (+)
il23r LOC108272282 coding upstream 305950 23495748 ~ 23530384 (+)
trnaf-gaa_16 NA coding upstream 360311 23475951 ~ 23476023 (+)
lrp8 lrp8,LOC108272272,LOC107758363,LOC108238419 coding upstream 382671 23277943 ~ 23453663 (+)
ap1m3 ap1m3,LOC108271949,LOC108441657,LOC107724146,LOC107684323 coding upstream 672679 23141011 ~ 23163655 (+)
LOC113538433 LOC108271906 coding downstream 719343 24558933 ~ 24567675 (+)
LOC113538193 NA coding downstream 728985 24568575 ~ 24570619 (+)
rtn4a LOC108271908 coding downstream 736091 24575681 ~ 24588531 (+)
LOC113538142 LOC108271661 coding downstream 1950374 25789964 ~ 25793678 (+)
LOC113538280 LOC108273248,LOC108436444,LOC103352837,LOC104926284 coding downstream 1981294 25820884 ~ 25840241 (+)
LOC113538279 NA non-coding upstream 169401 23662954 ~ 23666933 (+)
G32502 NA non-coding upstream 221269 23614863 ~ 23615065 (+)
LOC113538216 NA non-coding upstream 273701 23560722 ~ 23562633 (+)
G32466 serbp1a,serbp1,LOC108271890,LOC107594603,LOC107692416,LOC107758366,LOC107384419 non-coding upstream 275545 23516404 ~ 23560789 (+)
G32310 NA non-coding upstream 376953 23455960 ~ 23459381 (+)
G32662 NA non-coding downstream 104649 23944239 ~ 23944460 (+)
G32782 NA non-coding downstream 420403 24259993 ~ 24260377 (+)
G32795 brinp3a.2,LOC108440126,LOC108271609,LOC107711116,LOC107732449 non-coding downstream 494609 24334199 ~ 24334455 (+)
LOC117596090 NA non-coding downstream 809428 24649018 ~ 24650283 (+)
LOC117596060 NA non-coding downstream 923837 24763427 ~ 24764691 (+)
uhmk1 uhmk1,LOC107692420 other upstream 182779 23633606 ~ 23653555 (+)
tmem69 tmem69 other upstream 1232898 22597595 ~ 22603436 (+)
insl5a insl5 other upstream 2818467 21014838 ~ 21017867 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other upstream 3178254 20536973 ~ 20658080 (+)
LOC113543059 c11h1orf146 other upstream 3816108 20000046 ~ 20020226 (+)
G32684 NA other downstream 180788 24020378 ~ 24021036 (+)
LOC117598985 NA other downstream 813400 24652990 ~ 24656248 (+)
trak2 LOC108271640 other downstream 1917224 25756814 ~ 25784890 (+)
agap1 agap1,LOC108272907,LOC103044997,LOC107586321,LOC107688827,LOC107709574 other downstream 2425907 26265497 ~ 26408396 (+)
st6gal2b LOC108273345,LOC108272416,LOC107559918,LOC108437696,LOC107748583,LOC107688887,LOC103032506 other downstream 2774060 26613650 ~ 26649387 (+)

Expression


Co-expression Network