gpr180 (gpr180)


Basic Information

Item Value
gene id gpr180
gene name gpr180
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 26060455 ~ 26068892 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933130.2
CTGCGCGCTCTCGACATCCTACTCATATGATTGGTCTGCAAGTCTGTTAATCAATGAGGTAGCTGCAGGGACGTGTAATCTTCATTCATTGCGGAAAATAAGGGATTTTATGGAGGAGTGATGACACAATGTATGCGATTACAATTATTCTGATCGCCTTTGTGCACAGTTACTGTCCTGCTGATGGGAAAACTGTATCGGGAATGTTTCGAAGCCATATAGCGAGGGAAAACAATGGGCAATATATCACAAGATTTCTCTACCACGGGGAGAATGGCTTGATGGCTTACCGTCTGGAGAATGTGCCCTTGGCAGTACATAAAGAGGCCAGACTTCTGCTGTTTCAGGGCATCCAGGGCTTTGAAAACCTCAGCTGTCTGGACAGAGTGTCAGGAGCCCAGCTTACCATAACCCTGAGCACAGAGGAACACAATCAGACCATACCACGACTGGCCAGACCCCAGGCCTGGCATGTGATATATGCAGACCGTTACACCTGCCAGGAAGAGGAGCTTGATGGTGTGCTGGAGGATGTGGGCTTCCAGCTCACCATGCTAAACCCAGACTCAGCAGGGAACCCAACGGACCACTTCAGTGCTGAGGAGGCCGGTTTGCACAGCTTTTTCTTCTTGCTGATTCTGGCCTATTTTGTGGCCTCCTGTATCTACATGCAGCCCCTGTGGCAGGCTTTGCATAAGGGAGGTCCCATGCACACGGTGCTGAAGGTCCTGTCTACAGCTCTGTTCCTGCAAGGTCTATCTGTGCTCTTGAACTACATCCACATGGCCAAGTATGCTAGAGATGGAGTGGGAACACCTCTAATGGGCAACCTAGCAGAGTtctGTGACATGGTGGCTCAGGTGCAGATGCTATACATGCTGCTGAGTCTGTGTATGGGCTGGACACTGAGCCGAGGCAGGAAATCCCAGAGTAAACCACTGCAGTGGGACTCCTCTCCCATGTCCACTGCTCTTGCTCTTGGAGGAGTTATTACACAGGGAGCACTGCTGATCTGGGAGCAGTTTGAGGACACCGAGCACCACAGTTATCATGGTCATCACAGTGTACCTGGGTTACTGCTAATGGTGTTACGTGTTTCTCTCGCACTGATACTTGCAACAGTATTGTACCAGATTATCTCTGCAGAGCGGAGCACACTCAAAAGGGACTTCTATCTCAGCTTTGCCAAGGGTTGTTTCCTGTGGTTTCTGTGTCACCCAGTCCTTGTTCTCCTTTCCATCCTATTTGGTGAGCATCAAAAGGAAAAGGTCATAACCATTGGTGTGATTCtgtgccagtccatctcagtgGTGATCTTGTATAGGCTATTCCTCTCTCGTAGTCTTTACTGGGAAGTGTCATCACTTTCCTCTGTGACACTCCCACTAACCATGTCCAGAAACCTGCGGGGACGATACTGAAGAGCAGTACTGATACTGCCCTATTGATGCCTATTTGTAAGGAGCACAGGGCCACTCCAGAAGAAGCACTTTGCTGATAGATGGAGCAAGAGGTGTGTAGGGAGCAAAATCACATGTATTACCACGTGTACATGTTACCTTATATCTGATGTACCTTACCTTATGATATACCTTACGTTATATCATATGCAATGTTGCAGGGCAGAAATAAGATACAACTCCTGGGCCCTTCTGAAAAATAAGCACCTGTACGATGTAAAGAGATGGACATGTAGGACTGAGTTTTCCTTTTATGTTGCAGACTAACAATATTTCATCTATTTAAGAAGCccaataaactaaaaaaaaaaggacatttgtAGATAAGCATGTAGATGATGGTGCTGATACATGGAAAGGTCATATTATTGGTATGTCCATCCTTCCAACCTTATTTATAAGACATTCTGTATTTTATCTGGTCTAATGGTCTATCTGTTAAGGTTACAAACTACAGACTgatgacaaattaaatgaaatatcagCACCTCTGTTATCAGAGatattttgctggcatggtttggctccacttACTCTGTTATAGGAAAGAGTAACTAAAAATTATTACAACGTTATTGTGACTGAtaacctttatcctatgatgaaacatttctgtgttcaccgatgggagtggtctcttctagGAGGACAATATCTCCCATCCACAGGACACAAagactcactgaatggtttgatgagcatgaaaatgatgcaaatctatggccttcacagtcaccacacCTCAACTCAATTAAAGACCTTTAGGAGATTTTTAAGTGACATGTTAGAGTGCAGTCTATACCACTACTATCAAAACAGCAACTAAGGTTTGGAAGAATAGTGTTCATCCCTTCACTACAGTTCCAGATACTTGTAAGAATCTAGAAgagcactgaagctgtttttatgacttgtggtggcccaacaccttactaagacactttatgttgttttgttcCTTTATATTAATATCTATCTCTTTAGATGGCATCTAAACATATAGTTTTAAATAGCTGGAACATGGGACTGGTTTAAGGTGGCACAGtggcccctaggtgtgaattgAGTATGTGTAcagtgctctgtgatggacaggtgtcccatccagagttTATTTCATCCTAGGCTCTGGATATACTGTGACCCTGACAAAGAAAaggtggttactgaaaatgcaTGTTACTGGTTCAGTAACATTCCATAAAGTATTATGGAATCCCACTATGAAAGATCTTCCATGTGATTATTACAACAGTGATTTACATTAAATCTCAGGTCTGtttattggggggaaaaagccATGAATAAAGATTTTTGACTGTACAGAGCAATGGTGTACATACGCATTTGCACACAAAACTAATATGGTCACAAGCAAGgttttttaaaactaaacttAAATAAAGATGCCAAAGTTTGTTGTCTGAATTACTAAGTACAGTGAATATTGTATGTGGTTTGATGTTCATTTTCACAAGTGCCTGAAATGACAATCACTTTTCCAGTGAAAAAAGTCTAATGTTTTTGCTCtgtttatgatgaataaaaacagagaataTTTATTGTTAAA

Function

symbol description
gpr180 Orthologous to human GPR180 (G protein-coupled receptor 180).

NR:

description
integral membrane protein GPR180-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0019236 response to pheromone biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933130.2 True 3030 mRNA 0.43 9 26060455 26068892

Neighbor

gene id symbol gene type direction distance location
LOC113538391 NA coding downstream 242669 25811886 ~ 25817786 (-)
trim25l LOC108271643 coding downstream 247277 25795226 ~ 25813178 (-)
stradb stradb,LOC108271608,LOC106573852,LOC107582358,LOC107686750 coding downstream 305107 25745383 ~ 25755348 (-)
rbm26 rbm26,LOC107672672,LOC107690205,LOC107746592 coding downstream 385959 25662000 ~ 25674496 (-)
obi1 rnf219 coding downstream 479913 25570021 ~ 25580542 (-)
si:ch73-193c12.2 LOC108273213 coding upstream 143861 26212753 ~ 26218578 (-)
ccdc80l1 ccdc80,LOC108273094,LOC107565956 coding upstream 175048 26243940 ~ 26252248 (-)
gbx2 gbx2,LOC107096023,LOC103389863 coding upstream 345274 26414166 ~ 26418297 (-)
iqca1 iqca1,LOC108437680 coding upstream 361180 26430072 ~ 26481633 (-)
nck2b LOC108273233 coding upstream 583189 26652081 ~ 26702789 (-)
G33538 fbxl3a,fbxl3,LOC108273248,LOC108436444,LOC107664003,LOC107670904 non-coding downstream 217123 25837298 ~ 25843332 (-)
G33508 NA non-coding downstream 275575 25710231 ~ 25784880 (-)
LOC117599130 NA non-coding downstream 398491 25658315 ~ 25661964 (-)
G33166 NA non-coding downstream 628487 25431758 ~ 25431968 (-)
LOC113538494 NA non-coding downstream 820102 25206722 ~ 25240353 (-)
G33621 NA non-coding upstream 8483 26077375 ~ 26077901 (-)
G33617 NA non-coding upstream 20486 26089378 ~ 26109660 (-)
G33645 psmb3,LOC107586359,LOC107688824,LOC102792592 non-coding upstream 153571 26222463 ~ 26227188 (-)
G33697 NA non-coding upstream 170575 26239467 ~ 26242883 (-)
G33780 NA non-coding upstream 463737 26532629 ~ 26532905 (-)
LOC113538393 NA other downstream 152461 25900730 ~ 25907994 (-)
nbeal1 nbeal1 other downstream 321638 25680090 ~ 25738817 (-)
uap1 uap1,LOC107724142,LOC107551035 other downstream 2428442 23615454 ~ 23632013 (-)
dmrt2b LOC108271504 other downstream 2834907 23222293 ~ 23225548 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other downstream 3466594 22582303 ~ 22593861 (-)
slc19a1 slc19a1 other upstream 12257 26081149 ~ 26105675 (-)
ecrg4b c6h2orf40,LOC108273346,LOC108437667,LOC105893352 other upstream 561937 26630829 ~ 26638538 (-)
si:ch73-23l24.1 LOC108437696,LOC108272416,LOC107559918,LOC107748583,LOC103032506,LOC107688887 other upstream 570941 26639833 ~ 26649379 (-)
ndufs1 ndufs1,LOC103033212,LOC107555450,LOC107748553,LOC107705604,LOC107660088,LOC107566318 other upstream 1677232 27746124 ~ 27757546 (-)
LOC113538277 NA other upstream 1765921 27834813 ~ 27841597 (-)

Expression


Co-expression Network