ndufs1 (ndufs1,LOC103033212,LOC107555450,LOC107748553,LOC107705604,LOC107660088,LOC107566318)


Basic Information

Item Value
gene id ndufs1
gene name ndufs1,LOC103033212,LOC107555450,LOC107748553,LOC107705604,LOC107660088,LOC107566318
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 27746124 ~ 27757546 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933227.2
GATTACCCAATCATCGCGCCGGATACTGGATTTGTCGGAATACAGGTGGGAAGCATATCGCTTCTAAAACTCCTTCATAAGTGAATGCATTACGGTTGCGCTGTTCTGGTCCAGAAGGCCAAATAGCGTCAAGCGTCATGTTGCGTTTGCCAGCAGTTGGTCGGGCCCTGGCCGGGGCAGCCCACTCTAAAGGGAACCTCGCCACCTCTAGCAATGTAAGAACATCAATCCGGGCCTCGAGTAACATGGTTGAGGTGTTTGTAGATGGCAAGCCTGTGATGGTGGAACCCGGGACGACTGTACTTCAGGCCTGTGAGAAAGTTGGAGTGCAGATTCCTCGTTTCTGCTACCATGAGCGTCTGTCTGTGGCAGGAAACTGCCGAATGTGTCTGGTGGAGATCGAACGAGCTCCAAAGCCGGTTGCTGCGTGTGCTATGCCTGTCATGAAAGGCTGGAACATACTGACGGACTCTGAAAAGACACGAAAGGCCAGAGAGGGCGTCATGGAGTTCCTTCTTGCCAATCACCCACTTGACTGTCCTATCTGTGACCAAGGAGGAGAATGTGACTTGCAGGATCAGTCAATGATGTTTGGTTCGGACCGAAGTCGATTCACAGAGGGGAAGAGAGCGGTGGAGGACAAAAATATTGGCCCTCTCATCAAAACAATCATGACACGCTGCATTCAATGCACACGCTGTGTGCGCTTCGCTAGTGAGATCGCTGGTGTGGAGGATCTGGGCACCACAGGACGTGGCAACGACATGCAAATTGGCACTTATGTAGAGAAAATGTTCATGTCGGAGCTGTCCGGGAATGTGATCGATGTGTGTCCTGTTGGAGCGCTGACATCAAAACCCTACGCTTTCACAGCCCGACCCTGGGAGACAAGaaagacagaatcTATTGATGTGCTTGATGCGGTGTGTTCTAATATCGTGGTGAGCACCAGAGGAGGAGAGGTAATGAGGGTCCTGCCTCGTCTTAATGAAGACGTCAATGAGGAGTGGATCTCGGACAAAACCAGGTTTGCGTATGATGGACTGAAGAGGCAGCGCCTGACCCACCCCATGATCAAGGATGCCAGCGGTCAGCTGGTGCCCACTTCCTGGGAGGATGTTCTCACACGTGTAGCTGGCGTGCTCCAGGGAGTCCAGGCCTCTGAGATTGCAGCTATTGCTGGTGGGTTGGTAGATGCAGAGTCTCTGGTAGCCTTGAAAGACCTGCTGAACAAGCTGGACAGTGAAATCCTCTGCACTGAGGAGATCTTCCCTATGGCTGGTGCTGGGACCGACCTGCGCTCTAATTACCTGCTGAACACCCGTATAGCTGGCATTGAAGAGTGTGATCTGCTGCTTCTGATTGGAACAAACCCACGCTATGAGGCTCCTCTCTTCAACGCACGCGTCCGCAAGAGTTGGCTCCATAATGAGTTGCAAGTCTCTGTGGTGGGTCATCCAGTGGATCTTAGCTACTCTTACAATCATCTGGGTGATTCCACTCAGGTTCTGCAGGAGCTCGCTGCCGGAACCCACCCTTACTGCAAGGTGCTGGCCCAGGCCAAGCGGCCAGTAGTGGTGGTTGGAAGCTCCTGTCTCCAGAGGGTGGATGGTGCTGCCATCTTGAGTGCTGTATCCACAATTGCTCAGAATGCCCGTGCCAGCAGTGGGGTTGATGAGGGATGGAAGGTCCTTAATGTGCTGCACAGagtggCCAGTCAAGTAGCAGCACTGGATCTGGGCTATAAGCCTGGTGTGGAGGCAATCAGGAGGAACCCCCCGAAAGTGCTGTTCCTGCTGGGAGCTGATGCCGGCTGCATTACTAAAGCAGACCTGCCCAAAGACACCTTCATTATCTATCAGGGTCACCACGGTGATGTGGGAGCCCCCATGGCTGACGTCATCCTGCCTGGTGCAGCATACACAGAGAAGAATGGCAcatatgtaaatacagaggggcGCGCCCAGCAAACCAGAGTGGCAGTCACCCCACCTGGTATGGCTCGCGATGACTGGAAGATCCTCCGAGCcatctctgagGTGGCTGGAGTCACTCTGCCCTACGAGACATTAGATGAGGTGAGGAACAGACTGGCAGAGGTGGCCCCCAACCTGGTGCGTTATGATGACGTAGAGGAAGCAAACTACTTCAAACAGGCGAATGAGCTTGCTAAGGCTGTGAATCAGTCCCTGCTTGCAGAACCTCTTGTTCCTCCTCAGCTTTCAGTGAAAGATTTCTACATGACAGACTCCATCAGCAGGGCCTCACAGACAATGGCTAAGTGTGTAAAGGCAGTGACGGAGGGCGCAGCAGCAGTAGAGGAGCCTGCTATCTGCTAAAACGCACACATGCCTGTCCATTACCATGTGTTAAAACTGAACGAATTTAATGTTTGATCCAGCCCACAGCTACAGCTGAGAAatcttgcttttatttaaatacgCTAACAAGAATGTTGTACGCATGTCGTTCCCACACTGAGATCGAGGGAGAACTGCTTTGTTATCTAAAGCTCATAATGAATAAAGTTATATGATGTA
>XR_003403833.2
GATTACCCAATCATCGCGCCGGATACTGGATTTGTCGGAATACAGGTGGGAAGCATATCGCTTCTAAAACTCCTTCATAAGTGAATGCATTACGGTTGCGCTGTTCTGGTCCAGAAGGCCAAATAGCGTCAAGCGTCATGTTGCGTTTGCCAGCAGTTGGTCGGGCCCTGGCCGGGGCAGCCCACTCTAAAGGGAACCTCGCCACCTCTAGCAATGTAAGAACATCAATCCGGGCCTCGAGTAACATGGTTGAGGTGTTTGTAGATGGCAAGCCTGTGATGGTGGAACCCGGGACGACTGTACTTCAGGCCTGTGAGAAAGTTGGAGTGCAGATTCCTCGTTTCTGCTACCATGAGCGTCTGTCTGTGGCAGGAAACTGCCGAATGTGTCTGGTGGAGATCGAACGAGCTCCAAAGCCGGTTGCTGCGTGTGCTATGCCTGTCATGAAAGGCTGGAACATACTGACGGACTCTGAAAAGACACGAAAGGCCAGAGAGGGCGTCATGGAGTTCCTTCTTGCCAATCACCCACTTGACTGTCCTATCTGTGACCAAGGAGGAGAATGTGACTTGCAGGATCAGTCAATGATGTTTGGTTCGGACCGAAGTCGATTCACAGAGGGGAAGAGAGCGGTGGAGGACAAAAATATTGGCCCTCTCATCAAAACAATCATGACACGCTGCATTCAATGCACACGCTGTGTGCGCTTCGCTAGTGAGATCGCTGGTGTGGAGGATCTGGGCACCACAGGACGTGGCAACGACATGCAAATTGGCACTTATGTAGAGAAAATGTTCATGTCGGAGCTGTCCGGGAATGTGATCGATGTGTGTCCTGTTGGAGCGCTGACATCAAAACCCTACGCTTTCACAGCCCGACCCTGGGAGACAAGaaagacagaatcTATTGATGTGCTTGATGCGGTGTGTTCTAATATCGTGGTGAGCACCAGAGGAGGAGAGGTAATGAGGGTCCTGCCTCGTCTTAATGAAGACGTCAATGAGGAGTGGATCTCGGACAAAACCAGGTTTGCGTATGATGGACTGAAGAGGCAGCGCCTGACCCACCCCATGATCAAGGATGCCAGCGGTCAGCTGGTGCCCACTTCCTGGGAGGATGTTCTCACACGTGTAGCTGGCGTGCTCCAGGGAGTCCAGGCCTCTGAGATTGCAGCTATTGCTGGTGGGTTGGTAGATGCAGAGTCTCTGGTAGCCTTGAAAGACCTGCTGAACAAGCTGGACAGTGAAATCCTCTGCACTGAGGAGATCTTCCCTATGGCTGGTGCTGGGACCGACCTGCGCTCTAATTACCTGCTGAACACCCGTATAGCTGGCATTGAAGAGTGTGATCTGCTGCTTCTGATTGGAACAAACCCACGCTATGAGGCTCCTCTCTTCAACGCACGCGTCCGCAAGAGTTGGCTCCATAATGAGTTGCAAGTCTCTGTGGTGGGTCATCCAGTGGATCTTAGCTACTCTTACAATCATCTGGGTGATTCCACTCAGGTTCTGCAGGAGCTCGCTGCCGGAACCCACCCTTACTGCAAGGTGCTGGCCCAGGCCAAGCGGCCAGTAGTGGTGGTTGGAAGCTCCTGTCTCCAGAGGGTGGATGGTGCTGCCATCTTGAGTGCTGTATCCACAATTGCTCAGAATGCCCGTGCCAGCAGTGGGGTTGATGAGGGATGGAAGGTCCTTAATGTGCTGCACAGagtggCCAGTCAAGTAGCAGCACTGGATCTGGGCTATAAGCCTGGTGTGGAGGCAATCAGGAGGAACCCCCCGAAAGTGCTGTTCCTGCTGGGAGCTGATGCCGGCTGCATTACTAAAGCAGACCTGCCCAAAGACACCTTCATTATCTATCAGGTCACCACGGTGATGTGGGAGCCCCCATGGCTGACGTCATCCTGCCTGGTGCAGCATACACAGAGAAGAATGGCAcatatgtaaatacagaggggcGCGCCCAGCAAACCAGAGTGGCAGTCACCCCACCTGGTATGGCTCGCGATGACTGGAAGATCCTCCGAGCcatctctgagGTGGCTGGAGTCACTCTGCCCTACGAGACATTAGATGAGGTGAGGAACAGACTGGCAGAGGTGGCCCCCAACCTGGTGCGTTATGATGACGTAGAGGAAGCAAACTACTTCAAACAGGCGAATGAG

Function

symbol description
ndufs1 Predicted to enable 4 iron, 4 sulfur cluster binding activity; NADH dehydrogenase (ubiquinone) activity; and metal ion binding activity. Predicted to act upstream of or within ATP synthesis coupled electron transport. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in inherited metabolic disorder; mitochondrial complex I deficiency; and nuclear type mitochondrial complex I deficiency 5. Orthologous to human NDUFS1 (NADH:ubiquinone oxidoreductase core subunit S1).

NR:

description
PREDICTED: NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial isoform X1

GO:

id name namespace
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function

KEGG:

id description
K03934 NDUFS1; NADH dehydrogenase (ubiquinone) Fe-S protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933227.2 True 2540 mRNA 0.52 19 27746124 27757546
XR_003403833.2 False 2164 misc_RNA 0.53 17 27747579 27757546

Neighbor

gene id symbol gene type direction distance location
ino80db LOC108272719,LOC108266575,LOC108424342 coding downstream 128 27735313 ~ 27745996 (-)
rprmb LOC108273280 coding downstream 63046 27681415 ~ 27683078 (-)
gmppab gmppa,gmppab,LOC105907596,LOC107660139,LOC107555420,LOC107566312 coding downstream 151567 27584722 ~ 27594557 (-)
asic4b asic4,LOC107660096,LOC107555455,LOC107748548,LOC107705515,LOC107688893 coding downstream 202638 27505512 ~ 27543486 (-)
wnt6a LOC108273177 coding downstream 270033 27469025 ~ 27476091 (-)
dytn dytn coding upstream 30311 27787857 ~ 27797478 (-)
casp8 NA coding upstream 47815 27805361 ~ 27813221 (-)
catip catip coding upstream 59361 27816907 ~ 27823206 (-)
pnkd pnkd,LOC107705600,LOC107660081,LOC107584757,LOC107555416 coding upstream 65768 27823314 ~ 27831878 (-)
LOC113538258 LOC108273102,LOC108424711 coding upstream 141685 27899231 ~ 27909431 (-)
G34309 NA non-coding downstream 19618 27726307 ~ 27726506 (-)
G34253 NA non-coding downstream 163299 27582541 ~ 27582825 (-)
G34159 des,desmb,LOC108437828,LOC107566324,LOC107705613,LOC107660100 non-coding downstream 349664 27319771 ~ 27396460 (-)
G34154 NA non-coding downstream 438944 27304820 ~ 27307180 (-)
G34132 NA non-coding downstream 477004 27268299 ~ 27269120 (-)
G34514 NA non-coding upstream 45597 27803143 ~ 27804389 (-)
LOC113538491 NA non-coding upstream 86119 27843665 ~ 27846043 (-)
LOC113538492 NA non-coding upstream 91177 27848723 ~ 27852405 (-)
G34543 NA non-coding upstream 98798 27856344 ~ 27857191 (-)
G34564 NA non-coding upstream 159809 27917355 ~ 27920037 (-)
si:ch73-23l24.1 LOC108437696,LOC108272416,LOC107559918,LOC107748583,LOC103032506,LOC107688887 other downstream 1096745 26639833 ~ 26649379 (-)
ecrg4b c6h2orf40,LOC108273346,LOC108437667,LOC105893352 other downstream 1107586 26630829 ~ 26638538 (-)
slc19a1 slc19a1 other downstream 1640449 26081149 ~ 26105675 (-)
LOC113538393 NA other downstream 1838130 25900730 ~ 25907994 (-)
nbeal1 nbeal1 other downstream 2007307 25680090 ~ 25738817 (-)
LOC113538277 NA other upstream 77267 27834813 ~ 27841597 (-)
G34533 NA other upstream 85013 27842559 ~ 27852397 (-)
ube2o ube2o,LOC101886876,LOC104959255 other upstream 100012 27857558 ~ 27895548 (-)
LOC113538331 pitpnc1,LOC108424775,LOC102779150 other upstream 518667 28276213 ~ 28366271 (-)
LOC113538188 LOC108273137 other upstream 1184424 28941970 ~ 28955790 (-)

Expression


Co-expression Network