LOC113538391


Basic Information

Item Value
gene id LOC113538391
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 25811886 ~ 25817786 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933421.2
AACAGCGGGCCTTGCTCAGAGCTACGGTAATCCCCAGCTCATGAGGTTTGCAGCTGTTTCTTACTCGGTCAGAAGGGGAAGTGCTTACTGCATCACTTACCTTACTAAGATACAGACAAAGACACAAAGACATGGCACATTCACATAGCAAGACAGAGAAAGTAACAGTGTGTAAGAGAACAGGAGCTTTAATATCTTTCTGAAGTGGAGCTGGTGTGGAGATTTGTGAGTGTGAACTCAGAATGAagatcctcctcatcttcaCCCTCTGCCTGATCTCAGATGGCAGAAGCTCCAAGGAAGTAAGAGGATATTCAGGAGGAGGAGTCCATATCAAGTGCAAGTAtgataaaaaatacacagaaaaacaaaaatatttctgtaaggaTTCATGGCTAGTTTGTTCTGTCCAAATAaagacaggaaataaaaataagtggGTAAATTCAGGAAGATTCTCTCTGTTTGATGACACCAATTCAACGGAGATCAGGGTGATGATCAGAGAGCTCACTATAGAGGACACCGGGAAGTACCAGTTTGGAATTGATATAGGTTGGAAGAGAGACATTCACACACCTGTGGAACTGGAAGTAAAGGAAGGGGCCATGATCTCTAAAGAAGTGACTGCATATGCAGGGGGAGGAATCAACATCAAGTACAGATATGAGgatgaatataaatacaaaccaaaatTTTTCTGTAAGATTGGAACACATCAGTGGTGTTTTAATCGAAtaacagcaaaactaaacagTGAATTGGTACGGGATGGCAGATTCTCAGTTCATGACTACAGAAGTGCAGGattcttcagtgtgtttatcagCGAGCTGATTACGAAGGACACTGGAATATACGCGTGTACTGTTGTTGTGTCTGATGAAATCGAGATCTACACTGTTGTGAAGCTGAATGTAAGAGAAGATCTGTTCTATGAGAAGTCCATCATGAAGACTGTCCATGTAAGAGGAGATTTGAAGGTCAACTGTAAATACCCAGAATCCCACAGGAGTGACCCCAAGTTTCTCTGCAGGAGGCTGCAAGAGTCTGCTTGTTCTTATTATACAACTGTTAAAGAAAGtagaaaatatgtaaatatgggGAAATTGTCCCTGTATGATGACAGAGCAAAACAAATCTTCACTGTGAGCATTAGAAATGTAACTGAGCAGGACTCTGGTGAATACTGGTGCGGAGCTGAAGCAGGTGTGGAGTCGAAGGTTTATTTCACACAGATCAACCTGACAGTTACTGaTCCACGTGTTTCAGTTTCAACCTCAAAGCCAACAcaaccttcatcatcatcatcatcatcatcatttacaCCATTACTtctcacaaataaacacaaatcctGGCCTACTCCAGCCTTTCCTCCAACAGGATTTCCAGCTTCCACTAAGATCACTGTGTCTGtaattctgctgctgctgcttctgatTGGAATCTCATTCCTCACTTTGACTCTACTAAAGAGATGCAAGATGCAAGGCACAGCTTCTACTGGCAGGAGTTCTGTCCAAGACTCAGGAAACAACCAAGGGGTTTCTCTTGATGTCCGTGAGTTCGAGGAGATTAAAGACACCAGACACCTTTCTGCCTCAGATACTGGAACTTCCACAGTTTACTCTACTGTTCAAAAACCCACGATCCCCTCTGATCCTCAAACTGTTTACACAAACACTGAGTTACCTACAAGCCCATGTGATTTTGCACATACTGTTTATTCTACTGCTCAACTACCCACAAACCCTCCTGATCAGGACATCTACTCCACAGCTCAGTTACCCCCAAGTCTCTCGGCTGAGAAATCTGCTGAAGGTCTGACACAACAGTGAGTTTTCATGCCAATGTCACCAGCTCTAATAATGCCATTCCAAAGATTATCTTTAAGAAGGAAGAGGTTTCATGTGACTATGCTTCAGTCAGTCATGTCTTTACTTCATGTGGCTAGTGTAACACTTCTCCTGGGTTGGGTCGGGAATGAGGAGGCGGGAGGCAGGCTGAGGACAACTCCCACCTTTATAATGCAACTGCTACCAGTCaggaggacaaaagcttacacacactttctggACACATggacacatgaagccaaccaactacatgctgcatcacagggcaacaCACTTGGAAGGAAAACACTATCTGCCTCTTCAGCATACCTGAGTTCACAGATGctcacaattggctagtgtccctgtgattgacaagggagagaCAGCAGGCCACCCCTCCCACTCAGAGGGTATGTCCAATTTTGTACTTACGGCTGTGGCATCGTTGGGATCTGAACGCTTTTTCTTTTGCGACACTCCATTTTGCATTTTGGACCAAAATTCTTGTTTCTGCTTAGAAAGCTCCAAGCCCATAGTATGTGCCCACATGCTACTCTGTATGCTAggtgaaaaagtttttttttttatattgataataatttgattcactaaaatattgaatttcaccaagagtgatgaataataaacacattgctacatgtaatatataaacGTTTTACAGGAGGCCATGCTTCCCATGGATTCTTAAATCAGTCAGCTGTGGTTTAGCTCTGATTGGCATTGCAGACTGACAGTCTGACAGAGGGCTGTCAATCAAGCATGCTCATTACAATATTAGACCACACCCACCAAGAAAGTCAGGGTGGGCCTGCTCAGTGAATTCACCTGGTGGTTGAGCAGTATTTAACCcttttctgtcttgttttttttttttttttttaaatcttttagcTGTTTAATATACAAATTTGGTATCATACAAGCATTTACATAACTGTCCTTGGACACCCAATGTTTAAACCAATGATTAAAATTCACTTTATTCAGCAGCTAATATGCAGTATTTTTAGCAAATCTACTGTAGCGTTATTAAAGCATATTGTAGCATTGTGTATTATTAAATCAGGCATTAATTTGTATAACTGCAAGCTCCTGTGCCTGCCTGTTAATGTGGTGcttgatgttttgttttattagaaTAAGTGTTTGTTGtaagagaaatgtgtttatgggTTGGCTGTGTTAGTGTTCATGTTATTATGTTTGTTCTAACTACCATCCAACACTGGTTATCCCTATCCTGGCAATTCTGGAACTAATCACCCAGCCTGTGCTTGTGCTGTTAATGTGAGTTTGCCAAGAAAAGAGCAAGTGCATTGTTTTACCAGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933421.2 True 3192 mRNA 0.41 8 25811886 25817786

Neighbor

gene id symbol gene type direction distance location
stradb stradb,LOC108271608,LOC106573852,LOC107582358,LOC107686750 coding downstream 56538 25745383 ~ 25755348 (-)
rbm26 rbm26,LOC107672672,LOC107690205,LOC107746592 coding downstream 137390 25662000 ~ 25674496 (-)
obi1 rnf219 coding downstream 231344 25570021 ~ 25580542 (-)
pou4f1 pou4f1,LOC103143517,LOC107672640,LOC107709069 coding downstream 247797 25560790 ~ 25564089 (-)
LOC113538330 pcdh9,LOC107582331 coding downstream 641626 24968550 ~ 25170260 (-)
gpr180 gpr180 coding upstream 242669 26060455 ~ 26068892 (-)
si:ch73-193c12.2 LOC108273213 coding upstream 394967 26212753 ~ 26218578 (-)
ccdc80l1 ccdc80,LOC108273094,LOC107565956 coding upstream 426154 26243940 ~ 26252248 (-)
gbx2 gbx2,LOC107096023,LOC103389863 coding upstream 596380 26414166 ~ 26418297 (-)
iqca1 iqca1,LOC108437680 coding upstream 612286 26430072 ~ 26481633 (-)
G33508 NA non-coding downstream 27006 25710231 ~ 25784880 (-)
LOC117599130 NA non-coding downstream 149922 25658315 ~ 25661964 (-)
G33166 NA non-coding downstream 379918 25431758 ~ 25431968 (-)
LOC113538494 NA non-coding downstream 571533 25206722 ~ 25240353 (-)
G32923 NA non-coding downstream 987452 24824235 ~ 24824434 (-)
G33538 fbxl3a,fbxl3,LOC108273248,LOC108436444,LOC107664003,LOC107670904 non-coding upstream 19512 25837298 ~ 25843332 (-)
G33621 NA non-coding upstream 259589 26077375 ~ 26077901 (-)
G33617 NA non-coding upstream 271592 26089378 ~ 26109660 (-)
G33645 psmb3,LOC107586359,LOC107688824,LOC102792592 non-coding upstream 404677 26222463 ~ 26227188 (-)
G33697 NA non-coding upstream 421681 26239467 ~ 26242883 (-)
nbeal1 nbeal1 other downstream 73069 25680090 ~ 25738817 (-)
uap1 uap1,LOC107724142,LOC107551035 other downstream 2179873 23615454 ~ 23632013 (-)
dmrt2b LOC108271504 other downstream 2586338 23222293 ~ 23225548 (-)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 other downstream 3218025 22582303 ~ 22593861 (-)
ccdc17 ccdc17 other downstream 3229943 22572432 ~ 22581943 (-)
LOC113538393 NA other upstream 82944 25900730 ~ 25907994 (-)
slc19a1 slc19a1 other upstream 263363 26081149 ~ 26105675 (-)
ecrg4b c6h2orf40,LOC108273346,LOC108437667,LOC105893352 other upstream 813043 26630829 ~ 26638538 (-)
si:ch73-23l24.1 LOC108437696,LOC108272416,LOC107559918,LOC107748583,LOC103032506,LOC107688887 other upstream 822047 26639833 ~ 26649379 (-)
ndufs1 ndufs1,LOC103033212,LOC107555450,LOC107748553,LOC107705604,LOC107660088,LOC107566318 other upstream 1928338 27746124 ~ 27757546 (-)

Expression


Co-expression Network