ackr3b (ackr3)


Basic Information

Item Value
gene id ackr3b
gene name ackr3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 26484650 ~ 26489299 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933432.2
ATTGTTTGCTGGACAGAAACTCCAGTTTCTACACTCGAGTTCCTCAGTTGTGCGGGTGGGAGGCGTTCCTGCTCTCCTCCGCATATATTAACCAGCACCAGTAGCGCAGAGCGagaccatctctctctctctctctccctccctccctctccctctctctcagtctcttctGTGCTTAAGCCAGACCTGTGACTCGGCAGGATTACGACACGACCAGAGCTGCGGAATCCCGGAGATCGATACCCCTAACGATCAAGAGTTCCGGTGAGGAAAATCACCATGAGTGTGAACATGAATGAACTGACGGACCTGCTGGACATGTTGAGAGAGCAGAACTTCTCCTTCCTGGAGGAGAACGGCTCCCGAGTGGAGACAATGGTGTGCCAAAGTGCCTTCAGCCACAATGCCATGCTCTACTCCCTCTCCATCCTCTACGTGTTCATCTTCATCATTGGCCTGGCCGCTAACACGCTGGTGGTGTGGGTGAACATTCGCTCCAGCCGTGAGCGCCACGAGACACACTTGTACATCCTCAACCTGGCCATCGCTGACCTGTGTGTAGTGGCGACGCTGCCAATATCCATCAGCTCACTTCTCCAGCATGGCCACTGGCCATTCGGTGATGCCATGTGTAAAATCACACATCTCATCTTCAGTGTCAACCTCTTCAGCAGCATCTTCTTTCTCACCTGCATGAGTGTGGACCGCTATCTCGCCGTGGCTCGTTTCGGTGATTCCCCAGGACACAACAAGAGAAAATGGATAAGGCAGGTCGTCTGTGTGGGAATATGGGTGTTGGCACTGCTCGCTGCTCTGCCTGATACTTACTTTCTCCAGGCGGTCAAGTCCACGCACTCAGATATAACCGTGTGCAAATCTATGTACCCAGCCGAGAAGTTGTACGAGTGGACTGTAGGTGTCCAACTGAGCTTCATTGTCCTTGGTTTTGCCATTCCCTTCCCTGTTATTGCTGTGTTCTACGCCCTCTTGGCCAGGGTGATCAGCTCCTCGGTGGACCAGGAGCGTCGTGCCAGCCGACGCCTCGTCTTCACCTACATAGTGGTGTTTTTGGTGTGCTGGCTTCCCTACCATGGCACGCTACTTCTGGACACTCTGGCACTGCTGAACGCACTGCCACTGAGCTGCACCCTGGAGAATGCGCTGTATGTGGGACTGCATGTAACACAGTGCCTCTCGCTGCTACACTGCTGTGTCAACCCAGTCGTATACAACTTCATCAACCGCAACTACCGCTATGACCTCATGAAGGCCTTCATCTTTAAGTACTCCACCAAAAGTGGCCTGGCCAAGCTAATCGACGTGACACGAGCCTCTGAGACTGAATACTCTGCTGTTGAGAGCCAGGGCCCTCTGTGAGGAAATTTCCTGTGAAGAAATTGCTAACTGACTTTGCTGTAAACTCTGCTGACCCTCTGTATTGGGTTAAGAAACACATATGCTGCAGTTACAAAGAGACAGATCTCTTAAACTGTATCTCCTGAAACAGTATATGCTTTGTAAGGGACTATAGAATATTGTATTTGTTcaggatatactgtacatctctATATACAAtagaattgtatttttttttgtaaattcaaATGATTTTGAGAGATGTAATGACAGAAGCACTTGTACTGAGTTGAAGGGTAAGCCAGTAAGCTTCGGTGTTGACTGGTCAAGCGTATAAGGTCGTAGGGGTCAGTCGAAATCTGCTCCCCCCAGAGGAGACGCTCAGAGAACACACAAAGCCTCAGGGCCCATTTTGACCTCGGGGCTGACCCcgtctctgtttatctgtacCTTTCGGCCACCTTTAGGCTGACTATCGTGGCATCACAAGTGTTTAGCCAATGGACCAAGACGGAGTTAATAAGGAGGGACACAAAAGAGCCAAAGCATGGTGAGCGGAAGGGGACAAGTCCAAAATCTCATTATGAGGCATTGTCAAGGAATGACTGAATTGCTTGCATGTGTTATTGTATAAATCGAGTTGTAGAAACCAGATATACTTTTTTAGATAGATGTATGCTTTGTAAATACTAaggaatatttatatattcatcaGTGTGTATGTTCAGTGTTTTGACAAGTTAAAATGTactattgaaataaaaaaggtattcctgaaaa
>XM_034298768.1
tgcttttcttttcattcgGTGAATTGAGTGTCACTTTAAACGCTTCTGGTTGCCTCTAACTTGAGACTTTGGCTGGAGAAACTCTGAGATCACACTGCATGCGCAGCTGATTTGGACCCAGGGCGGGATCAAGAGTTCCGGTGAGGAAAATCACCATGAGTGTGAACATGAATGAACTGACGGACCTGCTGGACATGTTGAGAGAGCAGAACTTCTCCTTCCTGGAGGAGAACGGCTCCCGAGTGGAGACAATGGTGTGCCAAAGTGCCTTCAGCCACAATGCCATGCTCTACTCCCTCTCCATCCTCTACGTGTTCATCTTCATCATTGGCCTGGCCGCTAACACGCTGGTGGTGTGGGTGAACATTCGCTCCAGCCGTGAGCGCCACGAGACACACTTGTACATCCTCAACCTGGCCATCGCTGACCTGTGTGTAGTGGCGACGCTGCCAATATCCATCAGCTCACTTCTCCAGCATGGCCACTGGCCATTCGGTGATGCCATGTGTAAAATCACACATCTCATCTTCAGTGTCAACCTCTTCAGCAGCATCTTCTTTCTCACCTGCATGAGTGTGGACCGCTATCTCGCCGTGGCTCGTTTCGGTGATTCCCCAGGACACAACAAGAGAAAATGGATAAGGCAGGTCGTCTGTGTGGGAATATGGGTGTTGGCACTGCTCGCTGCTCTGCCTGATACTTACTTTCTCCAGGCGGTCAAGTCCACGCACTCAGATATAACCGTGTGCAAATCTATGTACCCAGCCGAGAAGTTGTACGAGTGGACTGTAGGTGTCCAACTGAGCTTCATTGTCCTTGGTTTTGCCATTCCCTTCCCTGTTATTGCTGTGTTCTACGCCCTCTTGGCCAGGGTGATCAGCTCCTCGGTGGACCAGGAGCGTCGTGCCAGCCGACGCCTCGTCTTCACCTACATAGTGGTGTTTTTGGTGTGCTGGCTTCCCTACCATGGCACGCTACTTCTGGACACTCTGGCACTGCTGAACGCACTGCCACTGAGCTGCACCCTGGAGAATGCGCTGTATGTGGGACTGCATGTAACACAGTGCCTCTCGCTGCTACACTGCTGTGTCAACCCAGTCGTATACAACTTCATCAACCGCAACTACCGCTATGACCTCATGAAGGCCTTCATCTTTAAGTACTCCACCAAAAGTGGCCTGGCCAAGCTAATCGACGTGACACGAGCCTCTGAGACTGAATACTCTGCTGTTGAGAGCCAGGGCCCTCTGTGAGGAAATTTCCTGTGAAGAAATTGCTAACTGACTTTGCTGTAAACTCTGCTGACCCTCTGTATTGGGTTAAGAAACACATATGCTGCAGTTACAAAGAGACAGATCTCTTAAACTGTATCTCCTGAAACAGTATATGCTTTGTAAGGGACTATAGAATATTGTATTTGTTcaggatatactgtacatctctATATACAAtagaattgtatttttttttgtaaattcaaATGATTTTGAGAGATGTAATGACAGAAGCACTTGTACTGAGTTGAAGGGTAAGCCAGTAAGCTTCGGTGTTGACTGGTCAAGCGTATAAGGTCGTAGGGGTCAGTCGAAATCTGCTCCCCCCAGAGGAGACGCTCAGAGAACACACAAAGCCTCAGGGCCCATTTTGACCTCGGGGCTGACCCcgtctctgtttatctgtacCTTTCGGCCACCTTTAGGCTGACTATCGTGGCATCACAAGTGTTTAGCCAATGGACCAAGACGGAGTTAATAAGGAGGGACACAAAAGAGCCAAAGCATGGTGAGCGGAAGGGGACAAGTCCAAAATCTCATTATGAGGCATTGTCAAGGAATGACTGAATTGCTTGCATGTGTTATTGTATAAATCGAGTTGTAGAAACCAGATATACTTTTTTAGATAGATGTATGCTTTGTAAATACTAaggaatatttatatattcatcaGTGTGTATGTTCAGTGTTTTGACAAGTTAAAATGTactattgaaataaaaaaggtattcctgaaaa

Function

symbol description
ackr3 Enables C-X-C chemokine binding activity; C-X-C chemokine receptor activity; and scavenger receptor activity. Involved in chemokine-mediated signaling pathway; receptor internalization; and regulation of intracellular signal transduction. Located in cell surface; clathrin-coated pit; and endosome.

NR:

description
PREDICTED: atypical chemokine receptor 3

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0006935 chemotaxis biological_process
GO:0001525 angiogenesis biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0001570 vasculogenesis biological_process
GO:0048920 posterior lateral line neuromast primordium migration biological_process
GO:0008354 germ cell migration biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015026 coreceptor activity molecular_function
GO:0004950 chemokine receptor activity molecular_function
GO:0019956 chemokine binding molecular_function

KEGG:

id description
K04304 CXCR7, ACKR3, RDC1; C-X-C chemokine receptor type 7 (atypical chemokine receptor 3)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933432.2 True 2136 mRNA 0.48 2 26484650 26489299
XM_034298768.1 False 2012 mRNA 0.48 2 26484915 26489299

Neighbor

gene id symbol gene type direction distance location
faimb LOC108273096,LOC108437684,LOC103044688 coding upstream 220363 26262825 ~ 26264287 (+)
slc19a2 slc19a2 coding upstream 244584 26232829 ~ 26240066 (+)
psmb3 psmb3,LOC102792592,LOC107688824 coding upstream 254734 26222530 ~ 26229916 (+)
LOC113538326 unc80,LOC107688825 coding upstream 273470 26141682 ~ 26211180 (+)
nomo nomo,LOC108273232,LOC108438153,LOC107677623,LOC107562229,LOC107709581 coding upstream 344872 26114808 ~ 26139778 (+)
trim63a NA coding downstream 41604 26530903 ~ 26532518 (+)
mlpha mlph coding downstream 51148 26540447 ~ 26553487 (+)
lrrfip1b lrrfip1,lrrfip1b,LOC107688829,LOC107596315,LOC107677622,LOC107738309 coding downstream 67717 26557016 ~ 26606730 (+)
fhl2b fhl2b,fhl2a,LOC108273234,LOC108266723,LOC108437838,LOC107716797 coding downstream 224685 26713984 ~ 26733596 (+)
tgfbrap1 tgfbrap1,LOC107596311,LOC107738304,LOC107688833,LOC107660108,LOC107748533 coding downstream 247190 26736489 ~ 26759429 (+)
G33410 NA non-coding upstream 73194 26411256 ~ 26411456 (+)
G33397 NA non-coding upstream 166863 26313015 ~ 26317787 (+)
G33395 NA non-coding upstream 179906 26298996 ~ 26304744 (+)
G33383 NA non-coding upstream 185868 26243942 ~ 26298782 (+)
LOC117595850 NA non-coding upstream 269217 26214465 ~ 26215433 (+)
G33440 NA non-coding downstream 68589 26557888 ~ 26558405 (+)
LOC113538244 NA non-coding downstream 321159 26810458 ~ 26826974 (+)
G33969 NA non-coding downstream 401808 26891107 ~ 26891387 (+)
LOC117595819 NA non-coding downstream 872024 27361323 ~ 27375825 (+)
G34207 NA non-coding downstream 1092599 27581898 ~ 27582101 (+)
agap1 agap1,LOC108272907,LOC103044997,LOC107586321,LOC107688827,LOC107709574 other upstream 76254 26265497 ~ 26408396 (+)
trak2 LOC108271640 other upstream 699760 25756814 ~ 25784890 (+)
LOC117598985 NA other upstream 1828402 24652990 ~ 24656248 (+)
G32684 NA other upstream 2463614 24020378 ~ 24021036 (+)
uhmk1 uhmk1,LOC107692420 other upstream 2831095 23633606 ~ 23653555 (+)
st6gal2b LOC108273345,LOC108272416,LOC107559918,LOC108437696,LOC107748583,LOC107688887,LOC103032506 other downstream 124351 26613650 ~ 26649387 (+)
adam23a adam23,LOC107705602,LOC107748557,LOC107688856,LOC107660086 other downstream 1280497 27769796 ~ 27787602 (+)
ten1 ten1 other downstream 1489498 27978797 ~ 27983171 (+)
ldlrb LOC108273208 other downstream 2632143 29121442 ~ 29176269 (+)
G35262 NA other downstream 2967576 29456875 ~ 29457426 (+)

Expression


Co-expression Network