ghrhrb (ghrhrb,LOC108271568,LOC103030126,LOC108440237,LOC106560417,LOC107692395,LOC107556991,LOC107731650,LOC107704523)


Basic Information

Item Value
gene id ghrhrb
gene name ghrhrb,LOC108271568,LOC103030126,LOC108440237,LOC106560417,LOC107692395,LOC107556991,LOC107731650,LOC107704523
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22426920 ~ 22474562 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026933453.2
TTCAGGAAAGCCACCCACTCTCCACACCACTGCTGTCACCGAGGGAGAATCCGGTGCTCGATTAATAACTAAACATCCGTGTAGACTCGACATTATGCAGCAGTGTGGACTGACCCCAATATACCAGCGTCTGTTAGACTAGGCGTTTAGACTGGTTTCTAAAGTCTCTTGACGCACACCTGAATGCTGAACATGATACTTTCTAGGAATTCGTTAACTTTCAGAGTCGTTCTGCTGACATGGTGGATCCACCAGTGCACTTGGCAAACGGCAGAAGCAATCCATCCAGTATGCACCCTCGTGGCTCAGCATATGAAGGCTCATGAGCAATGCAGATACACACGTCAACAAGAGAACCGCAACCAGACTACAATCACTGGCTGCCGAACAGAGTGGGATGAGATCCGTTGCTGGTACAGAGCTGAAGTTGGCCAAGTGGTTAATGTCTCTTGCTCTGAAGTTTCCCAGCTCTTTGCCAACAACAATGgtTACATATACCGGAACTGCACAAAGAACGGCTGGAGTGACCTTTACCCATCATATGAGAATGCGTGTATATTACCAACGGTGGAAGGAACTGAGacCTCATATTTTTCTACATTCAGACAGGTGTACACCGTAGGCTACGCTACCTCTCTCATCTCCCTCATATCAGCCATCTTTGTCTTTACAGCATTCAGGAAGTTCCACTGTACAAGGAACTACATCCACATCAACCTGTTTTCCTCCTTCATCCTGAGAGCTAGCGCGGTCTTCATTAAAGATGGTGTCCTCTTTACCGATGAAACCCAGGACCACTGTTTCATGTCTACAGCATCATGTAAGGCAGCAGTGGCCTTTTTCCAGTTTAGCATCCTGGCCAACTACTTCTGGCTCCTGGTGGAGGGCATGTACTTACAGACCCTGCTGgccctcacatttgtctcacaAAAGAAGTATTTTTGGTGGTACATCCTTATTGGCTGGGGCCTTCCAACAACAGTCTTGACTATCTGGGTTCTGGCCAGGAATTTCTACGATAACAAGGGGTGCTGGGACGACACAGACATTGCCTTCATTTGGTGGATTATAAAAGGACCGATTACAATATCTCTTCTGGTGAACTTTATCATCTTCATCAATGTGATCAGGATACTTGTGGAGAAGCTGAAGTCTCCTGGAGTTGGAGGCAATGACACCAGTCACTTTACGAGGCTGGCTAAGTCCACTCTGTTCCTGATCCCACTGTTTGGAATGCATTACATGGTGTTCGCCTTTCTGCCAGAGAACACAGGGGAGGACGCTCGTCTCTTCATTGAGCTCGGCCTGGGCTCATTTCAGGGCTTTGTTGTGGCTCTACTATACTGTTTTCTCAATGGAGAGGTGCAAGCGGAGCTGAAGAAGAGGCTGTGGAAATGGCAGATGCAGGGTTACATGAGTTACAGTAAGAGGAGGCGAACACTGTTCACAGAGAGCAGCACTGTcactcagatttctgttctagAAAAATCCAGCCCTAAGGAGCAGCCTTCAGCTGAGCTCAAAAACAGTATCTCACTGGTGTGAGGATGCTGACGCACCCTGTTTCTCTTGCCCTTATAGGATTGCCCCATCCCTATCAGTCATCAATACCAAGAGTGTTAGTTTTAAAGTtatactactattaataaaagAGTATAAATCACAGTCAGGGATTGGATTTAATCATACTGTGGACTCATAACGGTGACATTTCACACAGTATAAGGGGTCACATGTTGGACATTATTCCAGGgatctgttgaattctcagggTCAGATGGTGAAGaataattgtctataacagctgTTCTGTCAGTTCTGATTGCAaggcagatcacaggtttatattctaatatgttatc
>XM_026933454.2
TTCAGGAAAGCCACCCACTCTCCACACCACTGCTGTCACCGAGGGAGAATCCGGTGCTCGATTAATAACTAAACATCCGTGTAGACTCGACATTATGCAGCAGTGTGGACTGACCCCAATATACCAGCGTCTGTTAGACTAGGCGTTTAGACTGGTTTCTAAAGTCTCTTGACGCACACCTGAATGCTGAACATGATACTTTCTAGGAATTCGTTAACTTTCAGAGTCGTTCTGCTGACATGGTGGATCCACCAGTGCACTTGGCAAACGAAGCAATCCATCCAGTATGCACCCTCGTGGCTCAGCATATGAAGGCTCATGAGCAATGCAGATACACACGTCAACAAGAGAACCGCAACCAGACTACAATCACTGGCTGCCGAACAGAGTGGGATGAGATCCGTTGCTGGTACAGAGCTGAAGTTGGCCAAGTGGTTAATGTCTCTTGCTCTGAAGTTTCCCAGCTCTTTGCCAACAACAATGgtTACATATACCGGAACTGCACAAAGAACGGCTGGAGTGACCTTTACCCATCATATGAGAATGCGTGTATATTACCAACGGTGGAAGGAACTGAGacCTCATATTTTTCTACATTCAGACAGGTGTACACCGTAGGCTACGCTACCTCTCTCATCTCCCTCATATCAGCCATCTTTGTCTTTACAGCATTCAGGAAGTTCCACTGTACAAGGAACTACATCCACATCAACCTGTTTTCCTCCTTCATCCTGAGAGCTAGCGCGGTCTTCATTAAAGATGGTGTCCTCTTTACCGATGAAACCCAGGACCACTGTTTCATGTCTACAGCATCATGTAAGGCAGCAGTGGCCTTTTTCCAGTTTAGCATCCTGGCCAACTACTTCTGGCTCCTGGTGGAGGGCATGTACTTACAGACCCTGCTGgccctcacatttgtctcacaAAAGAAGTATTTTTGGTGGTACATCCTTATTGGCTGGGGCCTTCCAACAACAGTCTTGACTATCTGGGTTCTGGCCAGGAATTTCTACGATAACAAGGGGTGCTGGGACGACACAGACATTGCCTTCATTTGGTGGATTATAAAAGGACCGATTACAATATCTCTTCTGGTGAACTTTATCATCTTCATCAATGTGATCAGGATACTTGTGGAGAAGCTGAAGTCTCCTGGAGTTGGAGGCAATGACACCAGTCACTTTACGAGGCTGGCTAAGTCCACTCTGTTCCTGATCCCACTGTTTGGAATGCATTACATGGTGTTCGCCTTTCTGCCAGAGAACACAGGGGAGGACGCTCGTCTCTTCATTGAGCTCGGCCTGGGCTCATTTCAGGGCTTTGTTGTGGCTCTACTATACTGTTTTCTCAATGGAGAGGTGCAAGCGGAGCTGAAGAAGAGGCTGTGGAAATGGCAGATGCAGGGTTACATGAGTTACAGTAAGAGGAGGCGAACACTGTTCACAGAGAGCAGCACTGTcactcagatttctgttctagAAAAATCCAGCCCTAAGGAGCAGCCTTCAGCTGAGCTCAAAAACAGTATCTCACTGGTGTGAGGATGCTGACGCACCCTGTTTCTCTTGCCCTTATAGGATTGCCCCATCCCTATCAGTCATCAATACCAAGAGTGTTAGTTTTAAAGTtatactactattaataaaagAGTATAAATCACAGTCAGGGATTGGATTTAATCATACTGTGGACTCATAACGGTGACATTTCACACAGTATAAGGGGTCACATGTTGGACATTATTCCAGGgatctgttgaattctcagggTCAGATGGTGAAGaataattgtctataacagctgTTCTGTCAGTTCTGATTGCAaggcagatcacaggtttatattctaatatgttatc

Function

symbol description
ghrhrb Predicted to enable G protein-coupled peptide receptor activity and peptide hormone binding activity. Predicted to be involved in adenylate cyclase-modulating G protein-coupled receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and cell surface receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in isolated growth hormone deficiency. Orthologous to human GHRHR (growth hormone releasing hormone receptor).

NR:

description
PREDICTED: pituitary adenylate cyclase-activating polypeptide type I receptor isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026933453.2 True 1862 mRNA 0.46 13 22426920 22474562
XM_026933454.2 False 1858 mRNA 0.46 13 22426920 22474562

Neighbor

gene id symbol gene type direction distance location
cyldl LOC108271977 coding upstream 20441 22392828 ~ 22406479 (+)
LOC117599931 LOC108271599 coding upstream 307288 22109948 ~ 22119632 (+)
kank4 kank4 coding upstream 325815 22048516 ~ 22101105 (+)
dock7 dock7 coding upstream 392830 21969974 ~ 22034090 (+)
si:dkey-148h10.5 NA coding upstream 631411 21783792 ~ 21795509 (+)
akr1a1b akr1a1,LOC107731642,LOC107725198 coding downstream 78254 22552816 ~ 22560612 (+)
nasp nasp,LOC107594614,LOC107692404 coding downstream 88677 22563239 ~ 22570318 (+)
mast2 mast2 coding downstream 130419 22604981 ~ 22727448 (+)
LOC113538154 tspan1 coding downstream 553400 23027962 ~ 23045394 (+)
orc1 orc1,LOC107725193 coding downstream 597559 23072121 ~ 23085741 (+)
G31760 NA non-coding upstream 101583 22325121 ~ 22325337 (+)
G31744 mafa,mafaa,LOC107556987,LOC107591187 non-coding upstream 104874 22317683 ~ 22322046 (+)
LOC117599246 NA non-coding upstream 195905 22227215 ~ 22231015 (+)
LOC117599245 NA non-coding upstream 205394 22220382 ~ 22221526 (+)
G31704 NA non-coding upstream 238417 22182204 ~ 22188503 (+)
G31856 NA non-coding downstream 6842 22481404 ~ 22485447 (+)
G31878 NA non-coding downstream 29942 22504504 ~ 22514013 (+)
G31944 NA non-coding downstream 107787 22582349 ~ 22585190 (+)
G31979 NA non-coding downstream 334833 22809395 ~ 22811006 (+)
LOC117599173 NA non-coding downstream 513559 22988121 ~ 23026499 (+)
insl5a insl5 other upstream 1409053 21014838 ~ 21017867 (+)
dlg1 dlg1,LOC108271975,LOC108427717,LOC107738730 other upstream 1768840 20536973 ~ 20658080 (+)
LOC113543059 c11h1orf146 other upstream 2406694 20000046 ~ 20020226 (+)
smx5 lsm2,LSM2,smx5 other upstream 2889723 19534345 ~ 19537197 (+)
LOC113533886 espnl other upstream 3339709 19061097 ~ 19087211 (+)
tmem69 tmem69 other downstream 123033 22597595 ~ 22603436 (+)
uhmk1 uhmk1,LOC107692420 other downstream 1159044 23633606 ~ 23653555 (+)
G32684 NA other downstream 1545816 24020378 ~ 24021036 (+)
LOC117598985 NA other downstream 2178428 24652990 ~ 24656248 (+)
trak2 LOC108271640 other downstream 3282252 25756814 ~ 25784890 (+)

Expression


Co-expression Network